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JAL-4134 fix more of the egregious SeqNode/BinaryNode casting
[jalview.git] / src / jalview / gui /
2023-02-27 James ProcterJAL-4134 leaves marked when columns are selected -... tree | commitdiff
2023-02-27 James ProcterJAL-4134 TODO: alternative way of performing interactiv... tree | commitdiff
2023-02-27 James ProcterJAL-4134 display tree for columns - selecting an intern... tree | commitdiff
2023-02-27 James ProcterJAL-4134 allow tree groups to be stored/recovered on... tree | commitdiff
2023-02-27 James ProcterMerge branch 'develop' into features/JAL-4134_treeviewe... tree | commitdiff
2023-02-24 James ProcterMerge branch 'features/r2_11_2_alphafold/JAL-629' into... features/JAL-3858_PAEsInProjects tree | commitdiff
2023-02-23 James ProcterJAL-4134 - brutal hack to build a tree clustering colum... tree | commitdiff
2023-02-23 James ProcterJAL-4134 - refactor tree calculation code to work with... tree | commitdiff
2023-02-23 James ProcterJAL-4133 update validChar width when font is changed... tree | commitdiff
2023-02-22 James ProcterJAL-4133 store/restore alignment view’s charWidth and... tree | commitdiff
2023-02-22 James ProcterJAL-629 make sure we show GUI when not driven programma... tree | commitdiff
2023-02-22 James ProcterJAL-4095 slightly better threshold setting and todos... tree | commitdiff
2023-02-22 James ProcterJAL-4095 magic fill behaviour is PAE specific tree | commitdiff
2023-02-22 Ben SoaresMerge branch 'develop' into features/r2_11_2_alphafold... tree | commitdiff
2023-02-22 James ProcterJAL-4027 JAL-3858 rename CUSTOM_RENDERER to CONTACT_MAT... tree | commitdiff
2023-02-20 Ben SoaresJAL-4128 Catch RasterFormatException caused whilst... bug/JAL-4128_resizing_overview_with_solid_drags_causes_exception tree | commitdiff
2023-02-20 Ben SoaresMerge branch 'develop' into bug/JAL-4125_flatlaf_quitha... bug/JAL-4125_flatlaf_quithandler_warning_doesnt_display_properly tree | commitdiff
2023-02-16 James ProcterMerge branch 'features/r2_11_2_alphafold/JAL-629' into... tree | commitdiff
2023-02-13 Ben SoaresMerge branch 'merge/JAL-1988_JAL-3772+JAL-3416+JAL... tree | commitdiff
2023-02-13 Ben SoaresJAL-4125 Move confirmation of closing external viewer... tree | commitdiff
2023-02-13 James ProcterMerge branch 'develop' into feature/JAL-1713_overviewIn... tree | commitdiff
2023-02-09 Ben SoaresJAL-4125 Additions to JvOptionPane and QuitHandler... tree | commitdiff
2023-02-03 Ben SoaresJAL-629 Fasta sequence id reading whitespace fix. Flexi... tree | commitdiff
2023-02-03 James ProcterJAL-1551 remove temp file in src tree | commitdiff
2023-02-03 James ProcterMerge branch 'develop' into features/r2_11_2_alphafold... tree | commitdiff
2023-01-31 James ProcterJAL-1713 update from Jalview 2.11.3 develop tree | commitdiff
2023-01-30 Ben SoaresJAL-1988 Make sensible choices if only the opening... merge/JAL-1988_JAL-3772+JAL-3416+JAL-4054+JAL-4064 tree | commitdiff
2023-01-24 James ProcterMerge branch 'merge/JAL-1988_JAL-3772+JAL-3416+JAL... tree | commitdiff
2023-01-24 James ProcterJAL-629 hacked in --tempfac-shading - hardcoded to... tree | commitdiff
2023-01-24 James ProcterMerge branch 'features/r2_11_2_alphafold/JAL-2349_JAL... tree | commitdiff
2023-01-24 James ProcterMerge branch 'develop' (JAL-4102 2.11.2.6 patch release... features/r2_11_2_alphafold/JAL-2349_JAL-3855 tree | commitdiff
2023-01-23 Ben SoaresJAL-629 Attempts to add PAE to structure. --headless... tree | commitdiff
2023-01-20 Jim ProcterJAL-4114 model_page_url not required in v2.0 response patch/JAL-4114_updated_3dbeacons_api tree | commitdiff
2023-01-20 Jim ProcterJAL-4114 only rank model qualities that are computed... tree | commitdiff
2023-01-20 Jim ProcterJAL-4114 alphafold now marked as AB-INITIO so adjust... tree | commitdiff
2023-01-20 Jim ProcterJAL-4114 additional warnings when PDBe doesn’t return... tree | commitdiff
2023-01-17 Ben SoaresJAL-3416 No longer needed tree | commitdiff
2023-01-16 Ben SoaresJAL-3416 More tweaking of FlatLaf. Problem with macOS... tree | commitdiff
2023-01-06 Ben SoaresJAL-3416 remove a missed panel titlebar icon in TreePanel tree | commitdiff
2022-12-15 Ben SoaresJAL-629 move SubId to more logical place. Attempt remov... tree | commitdiff
2022-12-14 Ben SoaresJAL-629 Open Structure Viewer from cmdline tree | commitdiff
2022-12-08 Ben SoaresJAL-629 fix opening files tree | commitdiff
2022-11-23 Ben SoaresJAL-629 Doing things with the command line arguments tree | commitdiff
2022-11-16 Ben SoaresMerge branch 'improvement/JAL-3416_default_to_LIVE_DRAG... tree | commitdiff
2022-11-16 Ben SoaresJAL-3416 make flatlaf default for linux improvement/JAL-3416_default_to_LIVE_DRAG_MODE_for_flatlaf tree | commitdiff
2022-11-09 Ben SoaresJAL-3416 Add necessary logo to non-internal Frames tree | commitdiff
2022-11-09 Ben SoaresMerge branch 'improvement/JAL-3416_default_to_LIVE_DRAG... tree | commitdiff
2022-11-09 Ben SoaresJAL-3416 Add necessary logo to non-internal Frames tree | commitdiff
2022-11-09 Ben SoaresMerge branch 'improvement/JAL-3416_default_to_LIVE_DRAG... tree | commitdiff
2022-11-09 Ben SoaresJAL-3416 Remove all JFrame/JInternalFrame icons (set... tree | commitdiff
2022-11-09 Ben SoaresMerge branch 'bug/JAL-1988_JAL-3772_improved_quit_handl... tree | commitdiff
2022-11-09 Ben SoaresJAL-1988 JAL-3772 Test for FORCE_QUIT whilst saving... bug/JAL-1988_JAL-3772_improved_quit_handling tree | commitdiff
2022-11-08 Ben SoaresMerge branch 'bug/JAL-1988_JAL-3772_improved_quit_handl... tree | commitdiff
2022-11-08 Ben SoaresJAL-1988 JAL-3776 Formatting JvOptionPane tree | commitdiff
2022-11-08 Ben SoaresJAL-1988 JAL-3772 Fixes highlighted by tests tree | commitdiff
2022-11-04 Ben SoaresJAL-3416 Added logoIcon to quit (and potentially other... tree | commitdiff
2022-11-04 Ben SoaresJAL-1998 JAL-3772 JAL-3416 Merge conflict resolution... tree | commitdiff
2022-11-03 Ben SoaresJAL-3416 File Chooser iconified, JvOptionPanes iconifie... tree | commitdiff
2022-11-03 Jim ProcterJAL-3855 JAL-4095 simple picking of ranges adjacent... tree | commitdiff
2022-11-03 Ben SoaresJAL-1988 JAL-3772 Allow other window closing dialogs... tree | commitdiff
2022-11-03 Ben SoaresJAL-3416 More JInternalFrame icons tree | commitdiff
2022-11-03 Ben SoaresJAL-1988 JAL-3772 Tidying of unspecified Callable decla... tree | commitdiff
2022-11-03 Ben SoaresJAL-3416 Start to add JInternalFrame icons (to replace... tree | commitdiff
2022-11-02 Ben SoaresJAL-1988 JAL-3772 Moving packages to somewhere more... tree | commitdiff
2022-11-01 Ben SoaresJAL-3416 set flatlaf default drag mode to LIVE_DRAG_MODE tree | commitdiff
2022-10-30 Jim ProcterJAL-2349 JAL-3855 bizarre resizing exception when resiz... tree | commitdiff
2022-10-30 Jim ProcterJAL-4091 lines to associate rows sharing same sequence... tree | commitdiff
2022-10-29 Jim ProcterJAL-4094 shift+click drag up/down to resize all annotat... tree | commitdiff
2022-10-29 Jim ProcterJAL-4091 - noodling about including the names for seque... tree | commitdiff
2022-10-29 Jim ProcterMerge branch 'features/JAL-4061_and_JAL-4062_findselect... tree | commitdiff
2022-10-28 Ben SoaresJAL-1988 JAL-3772 Removed 'Wait' button from waitDialog... tree | commitdiff
2022-10-27 Ben SoaresJAL-1988 Allow generic Container object in JvOptionPane... tree | commitdiff
2022-10-26 Jim ProcterJAL-4086 quick and dirty mouseovers on ruler highlighti... tree | commitdiff
2022-10-24 Ben SoaresJAL-1988 JAL-3772 wait timer working first time but... tree | commitdiff
2022-10-24 Ben SoaresJAL-1988 JAL-3772 Non-blocking modal dialogs for unsave... tree | commitdiff
2022-10-22 Jim ProcterJAL-2349 JAL-3855 highlight residues associated with... tree | commitdiff
2022-10-21 Jim ProcterJAL-2349 JAL-3855 fix failing tests tree | commitdiff
2022-10-20 Jim ProcterJAL-2349 JAL-3855 ContactListI.getPosition() to recover... tree | commitdiff
2022-10-20 Jim ProcterJAL-2349 JAL-3855 experimenting with filtering columns... tree | commitdiff
2022-10-20 Jim ProcterJAL-3855 JAL-2349 AlignmentI.getContactList takes care... tree | commitdiff
2022-10-20 Jim ProcterJAL-4033 fix drag selections and distinguish row/column... tree | commitdiff
2022-10-20 Jim ProcterJAL-2349 (still buggy) interactive selection - time... tree | commitdiff
2022-10-20 Jim ProcterJAL-2349 tooltip reports value from contact range tree | commitdiff
2022-10-20 Jim ProcterJAL-2349 debugged click/drag and added yellow rubber... tree | commitdiff
2022-10-20 Jim ProcterJAL-2349 JAL-3855 - interactive point-wise row/column... tree | commitdiff
2022-10-19 Jim ProcterJAL-2349 JAL-4033 refactored contact matrix geom calc... tree | commitdiff
2022-10-14 Jim ProcterMerge branch 'features/JAL-3895_alphafoldcolours' into... tree | commitdiff
2022-09-26 Ben SoaresJAL-1988 JAL-3772 linked undostack to saved changes... tree | commitdiff
2022-09-23 Ben SoaresJAL-1988 JAL-3772 Quit confirmation dialog boxes with... tree | commitdiff
2022-09-16 Jim ProcterJAL-4062 copy highlighted region docs, new Alignment... tree | commitdiff
2022-09-15 Jim ProcterJAL-4061 use alignment panel’s feature renderer to... tree | commitdiff
2022-09-15 Jim ProcterJAL-4062 avc operation and model method for copying... tree | commitdiff
2022-09-14 Jim ProcterJAL-4061 JAL-4062 button in Find dialog to copy highlig... tree | commitdiff
2022-09-14 Jim ProcterJAL-4061 JAL-4062 Find can now search features tree | commitdiff
2022-08-08 Jim ProcterJAL-4046 JAL-3993 imports reformatting tree | commitdiff
2022-08-08 Jim ProcterJAL-4046 JAL-3993 patch for 2.11.2.4 release tree | commitdiff
2022-08-08 Jim ProcterMerge branch 'task/JAL-3991_check_actual_JAVA_VERSION_a... tree | commitdiff
2022-08-08 Jim ProcterJAL-4034 show the loading spinner when switching betwee... tree | commitdiff
2022-08-08 Jim ProcterMerge branch 'features/JAL-4034_improve_3dbeacons_butto... tree | commitdiff
2022-07-20 Jim ProcterJAL-4045 - don't apply distribution dependent scale... tree | commitdiff
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