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fileFormat enum wip changes
[jalview.git] / src / jalview / gui /
2016-07-18 gmungocfileFormat enum wip changes tree | commitdiff
2016-07-12 gmungocFileFormat enum wip changes tree | commitdiff
2016-07-11 gmungocfile format enum wip changes tree | commitdiff
2016-06-30 tcofoegbuJAL-2074 Improvement to StructureChooser and FTS interf... tree | commitdiff
2016-06-29 gmungocJAL-1369 fix bug reloading a project with group sequenc... tree | commitdiff
2016-06-27 gmungoctidied loop with generic iteration / loop variable tree | commitdiff
2016-06-27 gmungocJAL-2133 refactored duplicated code to AlignmentViewport tree | commitdiff
2016-06-24 tcofoegbuJAL-1960 updated unit test to include the test case... tree | commitdiff
2016-06-22 gmungocJAL-1982 defensive test for null array of annotations tree | commitdiff
2016-06-21 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... tree | commitdiff
2016-06-21 gmungocJAL-2074 suppress prompt to save closed Groovy script... tree | commitdiff
2016-06-21 Jim ProcterMerge branch 'features/JAL-1956_featureStyles' into... tree | commitdiff
2016-06-21 gmungocJAL-2074 reuse Groovy window when reopening; rebind... tree | commitdiff
2016-06-21 Jim ProcterJAL-1369 mark reference sequence & view state and resto... tree | commitdiff
2016-06-21 Jim ProcterJAL-1369 project XML efficiency TODO tree | commitdiff
2016-06-21 Jim ProcterJAL-1369 dead code TODO? tree | commitdiff
2016-06-21 Jim ProcterJAL-1369 ensure *real* alignment’s metadata written... tree | commitdiff
2016-06-20 Jim ProcterJAL-1551 tidy tree | commitdiff
2016-06-20 Jim ProcterJAL-2065 don’t pass stale group reference tree | commitdiff
2016-06-20 Jim ProcterJAL-2068 avoid ArrayIndexOutOfBounds when consensus... tree | commitdiff
2016-06-20 Jim ProcterJAL-2065 check position lies within group before gettin... tree | commitdiff
2016-06-20 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-06-20 tcofoegbuJAL-1823 Deleted two obsolete methods in PopupMenu... tree | commitdiff
2016-06-20 Jim ProcterMerge branch 'develop' into features/JAL-1812_JAL-2083_... features/JAL-1812_JAL-2083_groovyBinding tree | commitdiff
2016-06-16 gmungocJAL-1993 close sequence fetcher when opening database... tree | commitdiff
2016-06-16 gmungocJAL-1993 hide sequence fetcher dialogue until database... tree | commitdiff
2016-06-15 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-06-15 tcofoegbuJAL-2002 disabled 'Best Uniport Coverage' filter. JAL... tree | commitdiff
2016-06-15 gmungocJAL-2025 unit tests added tree | commitdiff
2016-06-14 tcofoegbuJAL-2047 resolved structure chooser's displayed column... tree | commitdiff
2016-06-08 tcofoegbuJAL-1479 JAL- Fix to eradicate duplicate mapping output... tree | commitdiff
2016-06-06 tcofoegbuJAL-1919, JAL-1960 fix to disable refetching dbrefs... tree | commitdiff
2016-06-06 tcofoegbuJAL-1944 bugfix for wrong alignment numbering when... tree | commitdiff
2016-06-02 gmungocJAL-1424 corrected typos in message text keys tree | commitdiff
2016-06-01 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-06-01 tcofoegbuJAL-1944 updated bugfix implementation tree | commitdiff
2016-06-01 gmungocJAL-1424 utility to check resource bundle labels used... tree | commitdiff
2016-05-31 tcofoegbumerge tree | commitdiff
2016-05-31 tcofoegbuJAL-1944 fix for visible seqs sometimes been replaced... tree | commitdiff
2016-05-31 gmungocJAL-2023 adjustments to mappings added for split frame... tree | commitdiff
2016-05-31 Jim ProcterMerge branch 'jims/291patches' into develop tree | commitdiff
2016-05-31 gmungocJAL-1011 JAL-1989 don't mirror column-only selections... tree | commitdiff
2016-05-30 Jim ProcterJAL-553 JAL-1557 always send selections after triggerin... tree | commitdiff
2016-05-30 Jim ProcterJAL-1557 allow group associated rows to be used to... tree | commitdiff
2016-05-30 Jim ProcterJAL-2077 fix: convenience method and checks for CMD... tree | commitdiff
2016-05-30 Jim ProcterJAL-1552 fix JAL-2122 resolve File->string before addin... tree | commitdiff
2016-05-27 gmungocJAL-1989 tightened up use of flag for 'column selection... tree | commitdiff
2016-05-27 gmungocJAL-1911 use existing object when setting 'Prompt each... tree | commitdiff
2016-05-27 tcofoegbumerge tree | commitdiff
2016-05-27 tcofoegbuJAL-1823 improvement to all chain code specification... tree | commitdiff
2016-05-27 tcofoegbuJAL-1911 further improvement to bugfix - do not save... tree | commitdiff
2016-05-27 gmungocJAL-1942 small tidy (formatting, explict imports, typed... tree | commitdiff
2016-05-26 tcofoegbuJAL-1911 improvement to bugfix - do not save i18n text... tree | commitdiff
2016-05-26 gmungocJAL-391 add reverse / complement to command history... tree | commitdiff
2016-05-26 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... tree | commitdiff
2016-05-26 Jim ProcterJAL-1551 formatting tree | commitdiff
2016-05-26 Jim ProcterJAL-1552 refactor shared dataflavor hander tree | commitdiff
2016-05-26 gmungocJAL-1993 open sequence fetcher tree on 'fetch sequences' tree | commitdiff
2016-05-26 Jim ProcterJAL-1552 extra debug logging for dataflavor if drop... tree | commitdiff
2016-05-26 tcofoegbumerge tree | commitdiff
2016-05-26 tcofoegbuJAL-1911 bugfix - do not save i18n text in preference... tree | commitdiff
2016-05-25 Jim ProcterJAL-1522 patch - try to pick best text dataflavor tree | commitdiff
2016-05-13 gmungocJAL-2105 capture Ensembl data version, check REST versi... tree | commitdiff
2016-05-10 gmungocMerge branch 'develop' into features/JAL-1956_featureStyles tree | commitdiff
2016-05-09 gmungocJAL-2018 export graduated feature colours correctly tree | commitdiff
2016-05-06 Jim ProcterJAL-192 JAL-2099 unused variables tree | commitdiff
2016-05-06 Jim ProcterJAL-1551 formatting tree | commitdiff
2016-05-06 Jim ProcterJAL-192 JAL-2099 reuse refactored scale code for wrappe... tree | commitdiff
2016-05-06 Jim ProcterJAL-192 JAL-2099 factored out calculation from renderin... tree | commitdiff
2016-05-06 Jim ProcterJAL-192 JAL-2099 factored out calculation from renderin... tree | commitdiff
2016-05-06 Jim ProcterJAL-192 JAL-2099 factored out calculation from renderin... tree | commitdiff
2016-05-06 Jim ProcterJAL-2100 centre triangles on hidden column vertical... tree | commitdiff
2016-05-06 Jim ProcterJAL-2100 optimisation tree | commitdiff
2016-05-06 Jim ProcterJAL-2100 triangles shown below in jvdesktop unwrapped... tree | commitdiff
2016-05-06 Jim ProcterJAL-192 patch off-by-one for pathological gap case tree | commitdiff
2016-05-05 Jim ProcterJAL-192 patch for off-by one and pathological case... tree | commitdiff
2016-05-04 gmungocJAL-2092 hide columns with/without feature tree | commitdiff
2016-05-03 gmungocJAL-2050 hide introns also when fetching Ensembl xrefs... tree | commitdiff
2016-05-02 gmungocJAL-1812 bind Groovy to Jalview rather than Desktop... tree | commitdiff
2016-04-29 tcofoegbumerge tree | commitdiff
2016-04-29 gmungocJAL-2051 better checking of retrieved / duplicated... tree | commitdiff
2016-04-29 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-04-29 Jim ProcterJAL-192 need visible and actual sequence limits for... tree | commitdiff
2016-04-29 Jim ProcterJAL-192 fix bounds when no hidden regions, and when... tree | commitdiff
2016-04-29 Jim ProcterJAL-192 scale origin relative to start of reference... tree | commitdiff
2016-04-29 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-04-28 gmungocJAL-2083 removed use of reflection for Groovy tree | commitdiff
2016-04-27 Jim ProcterJAL-192 fix off-by-one for alignment ruler with no... tree | commitdiff
2016-04-27 Jim ProcterJAL-192 show reference sequence position and residue... tree | commitdiff
2016-04-27 Jim ProcterJAL-1366 JAL-2086 reinstate bolding of reference sequence tree | commitdiff
2016-04-27 tcofoegbure-enabled new uniprot sequence fetcher on spike branch tree | commitdiff
2016-04-26 tcofoegbumerge tree | commitdiff
2016-04-26 tcofoegbuJAL-1563 reverted to old uniprot fetcher to enable... tree | commitdiff
2016-04-26 Jim ProcterJAL-2077 reinstate JAL-1554 fix for left-then-right... tree | commitdiff
2016-04-26 Jim ProcterJAL-2077 reinstate annotation label popup by handling... tree | commitdiff
2016-04-26 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-04-25 tcofoegbudevelop merge tree | commitdiff
2016-04-25 gmungocJAL-1812 JAL-2068 only allow one Groovy console open... tree | commitdiff
2016-04-24 Jim ProcterJAL-1551 JAL-2077 formatting tree | commitdiff
2016-04-24 Jim ProcterJAL-2077 - reinstate popups on osx tree | commitdiff
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