fix class-cast exception and added beginnings of DBRef inference mechanism
[jalview.git] / src / jalview / gui /
2007-09-14 jprocteradded support for loading a vamsas document into a...
2007-09-10 jprocterchoose a particular vamsas session, load, or create...
2007-09-07 jprocteradded action for saving the current session as a vamsas...
2007-09-06 jprocterfixes bootstrap bug noted by Chunlong Chen in email...
2007-08-31 jprocteradded CSV export of annotation rows to application.
2007-08-30 jprocter*really* make sure database references are stored and...
2007-08-30 jprocterensure codon mappings and database references are merge...
2007-08-30 jprocterstore dataset references, sequence dataset ids, and...
2007-08-22 jprocterpopup for non-fatal tree parsing error
2007-08-22 jprocterquick fix for exceptions due to invalid embl refs
2007-08-22 jprocterfix serious repetitive exceptions if user closes colour...
2007-08-22 jproctercatch occasional -ve imgWidth exception
2007-08-13 jprocterfixed typo in new 2_3 startup file default value
2007-08-02 jprocterjavadoc and bugfix for 'save' when jalview is default...
2007-08-01 jprocterensure current dataset reference is passed to the cross...
2007-07-25 jprocterbugfix for vamsas demo and IO rearrangement for AMSAFil...
2007-07-13 jprocterpickmanager on sequence and alignment position, vamsas...
2007-07-13 jprocterupdated to iscb demo vamsas-client version
2007-06-17 jproctervamsas mouseOvers
2007-06-17 jprocterenable mouseover between DNA coding regions and transla...
2007-06-17 jproctermouseOver highlighting and broadcasting efficiency
2007-06-17 jprocterthread safety during repaint
2007-06-17 jprocternull pointer exception fix
2007-05-22 jprocterrefactored document objects and bugfix on jvdataset...
2007-05-22 amwaterhouseDONT SET PICKING LABEL
2007-05-18 jprocterupdate to and from document (and remove deprecated...
2007-05-18 jprocterremoved uneccessary vamsasLoad commented out.
2007-05-17 jprocterrefining - still debugging.
2007-05-17 jprocteruse of proper vamsas client API by Jalview
2007-05-17 jproctermodified castor-1.1 library and refactored uk.ac.vamsas
2007-05-15 amwaterhouseSequenceListener highlights SearchResults, not just...
2007-05-10 jprocterdocumentation
2007-05-10 amwaterhousevisibility setting
2007-05-10 amwaterhouseKeep record of last tooltip
2007-05-10 amwaterhouseVisible state of annotation
2007-05-10 amwaterhouseAdd show all hidden menu
2007-05-10 amwaterhouseDont duplicate annotations in multiple views
2007-05-09 amwaterhouseminor formatting of tooltip
2007-05-08 amwaterhousecheck for null annotations
2007-05-08 amwaterhouseset picking label
2007-05-08 amwaterhouseinstant update when seq colour is pressed
2007-05-08 amwaterhousemust specify .CA
2007-05-08 amwaterhousesmall sphere for alpha carbon
2007-05-07 amwaterhouseImage size must allow for scale height
2007-05-07 amwaterhousedif is never used
2007-05-07 amwaterhouseAllow for large font sizes
2007-05-07 amwaterhousedont use gold highlights
2007-05-07 amwaterhouseMax width for tooltip
2007-05-07 amwaterhousestill trying to prevent null painting
2007-05-07 amwaterhouseUse id hash to add pdb mappings back to alignment
2007-05-07 amwaterhousePDBViewer available if necessary
2007-05-04 amwaterhouseCheck bounds of loaded comp
2007-05-04 amwaterhouseremove system.out
2007-05-04 amwaterhouseadded
2007-05-04 amwaterhouseAdd dbrefs before zero length features
2007-05-04 amwaterhouseRename AppJMol to AppJmol - also AppJmol works with...
2007-05-04 amwaterhouseRenamed to AppJmol
2007-05-04 amwaterhouseNew example file for version 2.3
2007-05-04 amwaterhouseSplash screen is not added using normal method, prevent...
2007-05-03 amwaterhousepdb id toUpperCase
2007-05-03 amwaterhouseoptimize repaints
2007-05-03 amwaterhouseremove system.out
2007-05-02 amwaterhouseAllow expansion of textarea for many sequence input
2007-05-02 amwaterhouseconvert space to gapchar
2007-05-02 jprocterundo stackempty error fix, refactored do and undo(...
2007-05-02 jprocterrefactored do and undo() method to take array of alignm...
2007-05-02 jproctercopy only the sequence associated alignment annotation...
2007-05-01 amwaterhouseMultiple views/hidden region/undo out of index bug
2007-05-01 amwaterhouseCan specify PDB chain to map sequence to - only used...
2007-05-01 jproctersort-by-score works of sequence-annotation, not alignme...
2007-05-01 amwaterhouseSave seqset properties
2007-04-30 jprocterfixed deadlock
2007-04-30 jprocterrebuild sort by scores menu when new annotation is...
2007-04-27 amwaterhouseremove excessive painting
2007-04-27 amwaterhouseCheck pdbid size >0
2007-04-27 amwaterhouseMove repaint in thread
2007-04-27 amwaterhousePut alignmentProperties in scrollpane
2007-04-27 amwaterhouseCheck feature group is visible for mouse over features
2007-04-27 amwaterhouseremove System.out
2007-04-27 jprocternewlines in alignment properties converted to <br>
2007-04-27 amwaterhousehide the initial window after selection made
2007-04-27 amwaterhouseAnnotation gradient will use direct colours if no graph...
2007-04-27 amwaterhousehide annotation colouring options
2007-04-27 amwaterhouseDont colour labels
2007-04-26 jprocteradded/tested sort by scores menu and added basic extrac...
2007-04-26 jprocteruse hasScore method to test presence of score in annota...
2007-04-26 amwaterhousecheck for null ss character
2007-04-26 amwaterhouseEdit seqs
2007-04-26 jproctergroovy support without compile-time dependency.
2007-04-25 jproctergetContentPane().add alignmentProperties popup.
2007-04-25 amwaterhouseShow scores
2007-04-25 amwaterhouseExport annotations with properties
2007-04-25 amwaterhouseView Properties
2007-04-25 jprocterAlignmentAnnotation: added annotation score attribute...
2007-04-23 jprocterfunctions that operate on references to sequences in...
2007-04-23 jprocterdistinct methods for getting references to selected...
2007-04-23 amwaterhouseDbref fetcher takes sequences, not alignment
2007-04-23 amwaterhouseTest out new arrangement
2007-04-23 amwaterhouseGet colour from structure added
2007-04-23 amwaterhousecheck dispalyChar is not null
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