| 2007-09-14 |
jprocter | added support for loading a vamsas document into a... |
tree | commitdiff |
| 2007-09-10 |
jprocter | choose a particular vamsas session, load, or create... |
tree | commitdiff |
| 2007-09-07 |
jprocter | added action for saving the current session as a vamsas... |
tree | commitdiff |
| 2007-09-06 |
jprocter | fixes bootstrap bug noted by Chunlong Chen in email... |
tree | commitdiff |
| 2007-08-31 |
jprocter | added CSV export of annotation rows to application. |
tree | commitdiff |
| 2007-08-30 |
jprocter | *really* make sure database references are stored and... |
tree | commitdiff |
| 2007-08-30 |
jprocter | ensure codon mappings and database references are merge... |
tree | commitdiff |
| 2007-08-30 |
jprocter | store dataset references, sequence dataset ids, and... |
tree | commitdiff |
| 2007-08-22 |
jprocter | popup for non-fatal tree parsing error |
tree | commitdiff |
| 2007-08-22 |
jprocter | quick fix for exceptions due to invalid embl refs |
tree | commitdiff |
| 2007-08-22 |
jprocter | fix serious repetitive exceptions if user closes colour... |
tree | commitdiff |
| 2007-08-22 |
jprocter | catch occasional -ve imgWidth exception |
tree | commitdiff |
| 2007-08-13 |
jprocter | fixed typo in new 2_3 startup file default value |
tree | commitdiff |
| 2007-08-02 |
jprocter | javadoc and bugfix for 'save' when jalview is default... |
tree | commitdiff |
| 2007-08-01 |
jprocter | ensure current dataset reference is passed to the cross... |
tree | commitdiff |
| 2007-07-25 |
jprocter | bugfix for vamsas demo and IO rearrangement for AMSAFil... |
tree | commitdiff |
| 2007-07-13 |
jprocter | pickmanager on sequence and alignment position, vamsas... |
tree | commitdiff |
| 2007-07-13 |
jprocter | updated to iscb demo vamsas-client version |
tree | commitdiff |
| 2007-06-17 |
jprocter | vamsas mouseOvers |
tree | commitdiff |
| 2007-06-17 |
jprocter | enable mouseover between DNA coding regions and transla... |
tree | commitdiff |
| 2007-06-17 |
jprocter | mouseOver highlighting and broadcasting efficiency |
tree | commitdiff |
| 2007-06-17 |
jprocter | thread safety during repaint |
tree | commitdiff |
| 2007-06-17 |
jprocter | null pointer exception fix |
tree | commitdiff |
| 2007-05-22 |
jprocter | refactored document objects and bugfix on jvdataset... |
tree | commitdiff |
| 2007-05-22 |
amwaterhouse | DONT SET PICKING LABEL |
tree | commitdiff |
| 2007-05-18 |
jprocter | update to and from document (and remove deprecated... |
tree | commitdiff |
| 2007-05-18 |
jprocter | removed uneccessary vamsasLoad commented out. |
tree | commitdiff |
| 2007-05-17 |
jprocter | refining - still debugging. |
tree | commitdiff |
| 2007-05-17 |
jprocter | use of proper vamsas client API by Jalview |
tree | commitdiff |
| 2007-05-17 |
jprocter | modified castor-1.1 library and refactored uk.ac.vamsas |
tree | commitdiff |
| 2007-05-15 |
amwaterhouse | SequenceListener highlights SearchResults, not just... |
tree | commitdiff |
| 2007-05-10 |
jprocter | documentation |
tree | commitdiff |
| 2007-05-10 |
amwaterhouse | visibility setting |
tree | commitdiff |
| 2007-05-10 |
amwaterhouse | Keep record of last tooltip |
tree | commitdiff |
| 2007-05-10 |
amwaterhouse | Visible state of annotation |
tree | commitdiff |
| 2007-05-10 |
amwaterhouse | Add show all hidden menu |
tree | commitdiff |
| 2007-05-10 |
amwaterhouse | Dont duplicate annotations in multiple views |
tree | commitdiff |
| 2007-05-09 |
amwaterhouse | minor formatting of tooltip |
tree | commitdiff |
| 2007-05-08 |
amwaterhouse | check for null annotations |
tree | commitdiff |
| 2007-05-08 |
amwaterhouse | set picking label |
tree | commitdiff |
| 2007-05-08 |
amwaterhouse | instant update when seq colour is pressed |
tree | commitdiff |
| 2007-05-08 |
amwaterhouse | must specify .CA |
tree | commitdiff |
| 2007-05-08 |
amwaterhouse | small sphere for alpha carbon |
tree | commitdiff |
| 2007-05-07 |
amwaterhouse | Image size must allow for scale height |
tree | commitdiff |
| 2007-05-07 |
amwaterhouse | dif is never used |
tree | commitdiff |
| 2007-05-07 |
amwaterhouse | Allow for large font sizes |
tree | commitdiff |
| 2007-05-07 |
amwaterhouse | dont use gold highlights |
tree | commitdiff |
| 2007-05-07 |
amwaterhouse | Max width for tooltip |
tree | commitdiff |
| 2007-05-07 |
amwaterhouse | still trying to prevent null painting |
tree | commitdiff |
| 2007-05-07 |
amwaterhouse | Use id hash to add pdb mappings back to alignment |
tree | commitdiff |
| 2007-05-07 |
amwaterhouse | PDBViewer available if necessary |
tree | commitdiff |
| 2007-05-04 |
amwaterhouse | Check bounds of loaded comp |
tree | commitdiff |
| 2007-05-04 |
amwaterhouse | remove system.out |
tree | commitdiff |
| 2007-05-04 |
amwaterhouse | added |
tree | commitdiff |
| 2007-05-04 |
amwaterhouse | Add dbrefs before zero length features |
tree | commitdiff |
| 2007-05-04 |
amwaterhouse | Rename AppJMol to AppJmol - also AppJmol works with... |
tree | commitdiff |
| 2007-05-04 |
amwaterhouse | Renamed to AppJmol |
tree | commitdiff |
| 2007-05-04 |
amwaterhouse | New example file for version 2.3 |
tree | commitdiff |
| 2007-05-04 |
amwaterhouse | Splash screen is not added using normal method, prevent... |
tree | commitdiff |
| 2007-05-03 |
amwaterhouse | pdb id toUpperCase |
tree | commitdiff |
| 2007-05-03 |
amwaterhouse | optimize repaints |
tree | commitdiff |
| 2007-05-03 |
amwaterhouse | remove system.out |
tree | commitdiff |
| 2007-05-02 |
amwaterhouse | Allow expansion of textarea for many sequence input |
tree | commitdiff |
| 2007-05-02 |
amwaterhouse | convert space to gapchar |
tree | commitdiff |
| 2007-05-02 |
jprocter | undo stackempty error fix, refactored do and undo(... |
tree | commitdiff |
| 2007-05-02 |
jprocter | refactored do and undo() method to take array of alignm... |
tree | commitdiff |
| 2007-05-02 |
jprocter | copy only the sequence associated alignment annotation... |
tree | commitdiff |
| 2007-05-01 |
amwaterhouse | Multiple views/hidden region/undo out of index bug |
tree | commitdiff |
| 2007-05-01 |
amwaterhouse | Can specify PDB chain to map sequence to - only used... |
tree | commitdiff |
| 2007-05-01 |
jprocter | sort-by-score works of sequence-annotation, not alignme... |
tree | commitdiff |
| 2007-05-01 |
amwaterhouse | Save seqset properties |
tree | commitdiff |
| 2007-04-30 |
jprocter | fixed deadlock |
tree | commitdiff |
| 2007-04-30 |
jprocter | rebuild sort by scores menu when new annotation is... |
tree | commitdiff |
| 2007-04-27 |
amwaterhouse | remove excessive painting |
tree | commitdiff |
| 2007-04-27 |
amwaterhouse | Check pdbid size >0 |
tree | commitdiff |
| 2007-04-27 |
amwaterhouse | Move repaint in thread |
tree | commitdiff |
| 2007-04-27 |
amwaterhouse | Put alignmentProperties in scrollpane |
tree | commitdiff |
| 2007-04-27 |
amwaterhouse | Check feature group is visible for mouse over features |
tree | commitdiff |
| 2007-04-27 |
amwaterhouse | remove System.out |
tree | commitdiff |
| 2007-04-27 |
jprocter | newlines in alignment properties converted to <br> |
tree | commitdiff |
| 2007-04-27 |
amwaterhouse | hide the initial window after selection made |
tree | commitdiff |
| 2007-04-27 |
amwaterhouse | Annotation gradient will use direct colours if no graph... |
tree | commitdiff |
| 2007-04-27 |
amwaterhouse | hide annotation colouring options |
tree | commitdiff |
| 2007-04-27 |
amwaterhouse | Dont colour labels |
tree | commitdiff |
| 2007-04-26 |
jprocter | added/tested sort by scores menu and added basic extrac... |
tree | commitdiff |
| 2007-04-26 |
jprocter | use hasScore method to test presence of score in annota... |
tree | commitdiff |
| 2007-04-26 |
amwaterhouse | check for null ss character |
tree | commitdiff |
| 2007-04-26 |
amwaterhouse | Edit seqs |
tree | commitdiff |
| 2007-04-26 |
jprocter | groovy support without compile-time dependency. |
tree | commitdiff |
| 2007-04-25 |
jprocter | getContentPane().add alignmentProperties popup. |
tree | commitdiff |
| 2007-04-25 |
amwaterhouse | Show scores |
tree | commitdiff |
| 2007-04-25 |
amwaterhouse | Export annotations with properties |
tree | commitdiff |
| 2007-04-25 |
amwaterhouse | View Properties |
tree | commitdiff |
| 2007-04-25 |
jprocter | AlignmentAnnotation: added annotation score attribute... |
tree | commitdiff |
| 2007-04-23 |
jprocter | functions that operate on references to sequences in... |
tree | commitdiff |
| 2007-04-23 |
jprocter | distinct methods for getting references to selected... |
tree | commitdiff |
| 2007-04-23 |
amwaterhouse | Dbref fetcher takes sequences, not alignment |
tree | commitdiff |
| 2007-04-23 |
amwaterhouse | Test out new arrangement |
tree | commitdiff |
| 2007-04-23 |
amwaterhouse | Get colour from structure added |
tree | commitdiff |
| 2007-04-23 |
amwaterhouse | check dispalyChar is not null |
tree | commitdiff |
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git://source.jalview.org / jalview.git / history