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Merge branch 'develop' into develop_m2_8_1_2
[jalview.git]
/
src
/
jalview
/
gui
/
2013-06-13
Jim Procter
Merge branch 'develop' into develop_m2_8_1_2
tree
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commitdiff
2013-06-13
Jim Procter
Merge branch 'JAL-1315_headlessEPS' into develop
tree
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commitdiff
2013-06-13
Jim Procter
fix for JAL-1315
tree
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commitdiff
2013-06-07
Jim Procter
Merge branch 'develop' into develop_m2_8_1_2
tree
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commitdiff
2013-06-07
Jim Procter
Merge branch '2_8_1_patch_multiharmony' into develop
tree
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commitdiff
2013-06-07
Jim Procter
fix for JAL-1246
tree
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commitdiff
2013-06-07
Jim Procter
JAL-1307 patch to squash number format exceptions when...
tree
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commitdiff
2013-06-07
Jim Procter
Merge branch 'develop' into develop_m2_8_1_2
tree
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commitdiff
2013-06-07
Jim Procter
Merge branch 'JAL-1161_optimisingAnnotationPanel' into...
tree
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commitdiff
2013-05-24
Jim Procter
JAL-1291 reinstate fastPaint flag manipulation to make...
tree
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commitdiff
2013-05-24
Jim Procter
JAL-1291 TODO: revised graphGroup model so grouped...
tree
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commitdiff
2013-05-24
Jim Procter
JAL-1291 - don't touch the graphics object until after...
tree
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commitdiff
2013-05-24
Jim Procter
JAL-1291 conditional output of rendering debugging...
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commitdiff
2013-05-24
Jim Procter
JAL-966 paintrefresher should be abstract [ Merge branc...
tree
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commitdiff
2013-05-24
Jim Procter
JAL-1161 conditional parameters for controlling clipping
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commitdiff
2013-05-24
Jim Procter
JAL-1161 changed signature to allow clipping bounds...
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commitdiff
2013-05-24
Jim Procter
formatting
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commitdiff
2013-05-24
Jim Procter
JAL-1161 only trigger an annotation repaint in unwrappe...
tree
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commitdiff
2013-05-24
Jim Procter
JAL-1161 enable fastPaint for nudges from scroll bars...
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commitdiff
2013-05-24
Jim Procter
JAL-1161 stick to api
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commitdiff
2013-02-14
Jim Procter
patch for bizarre ConcurrentModificationException that...
tree
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commitdiff
2013-02-13
Jim Procter
Merge branch 'jims_annotate3d_update' into menard_final...
tree
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commitdiff
2013-02-13
jprocter
fix merge conflicts for finess on JAL-1140 (introduced...
tree
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commitdiff
2013-02-13
jprocter
JAL-1216 switch to official release of VARNA 3.9
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commitdiff
2013-01-18
jprocter
Merge branch 'JAL-1254-hotfix' into develop
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commitdiff
2013-01-18
jprocter
JAL-1255 don't show 'Right click to add annotations...
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commitdiff
2012-12-07
jprocter
menu for choosing between 'protein' and 'RNA' mode...
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commitdiff
2012-12-07
jprocter
gui hooks for contrafold and RNAfold services. commente...
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commitdiff
2012-12-07
jprocter
Exception signature change (will be overwritten by...
tree
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commitdiff
2012-12-07
jprocter
remove mentions of non-functional RNAInteraction colour...
tree
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commitdiff
2012-12-07
jprocter
tidy debug messages
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commitdiff
2012-12-07
jprocter
proxy commit for Anne Menard <menard.annec@gmail.com...
tree
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commitdiff
2012-12-04
jprocter
JAL-1140 - IO classes should only raise generic IOExcep...
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commitdiff
2012-12-04
jprocter
JAL-1216 switch to official release of VARNA 3.9
tree
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commitdiff
2012-11-17
jprocter
openjdk7 returns null for default value selected format...
tree
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commitdiff
2012-11-15
jprocter
Merge branch 'develop' into menard
tree
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commitdiff
2012-11-09
jprocter
constructor takes settings from any existing feature...
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commitdiff
2012-11-08
jprocter
JAL-1193 ensure the 'loadedComplete' method gets called...
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commitdiff
2012-11-08
jprocter
tidy imports
tree
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commitdiff
2012-10-24
jprocter
JAL-1193 call setLoadingFromArchiveFinished(true) for...
tree
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commitdiff
2012-10-22
jprocter
Jalview 2.8 Source Header
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commitdiff
2012-10-04
jprocter
Merge branch 'develop' into Release_2_8_Branch
tree
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commitdiff
2012-10-04
jprocter
JAL-1064 JAL-671 make sure all buttons are disabled...
tree
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commitdiff
2012-10-03
jprocter
formatting
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commitdiff
2012-10-03
jprocter
formatting
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commitdiff
2012-10-03
jprocter
JAL-1183 JAL-343 - use dialog queue for JABA warning...
tree
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commitdiff
2012-10-02
jprocter
JAL-1185 patch NPE - create new group for subtree on...
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commitdiff
2012-10-01
jprocter
JAL-1130 JAL-1137 messy hardcoding of author list to...
tree
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commitdiff
2012-10-01
jprocter
JAL-1130 JAL-1139 hardcode preferred height to logo...
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commitdiff
2012-10-01
jprocter
JAL-1130 more robust loading code and different logos...
tree
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commitdiff
2012-10-01
jprocter
JAL-1183 dialog thread is only started after the splash...
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commitdiff
2012-10-01
jprocter
JAL-1111 dialog flickers whilst example file starts...
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commitdiff
2012-10-01
jprocter
JAL-1184 apparent deadlock when launching jalview on...
tree
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commitdiff
2012-10-01
jprocter
JAL-1183 showNews adds news discovery and display threa...
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commitdiff
2012-10-01
jprocter
JAL-1183 dialog queue
tree
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commitdiff
2012-09-27
jprocter
JAL-1030 patch typo
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commitdiff
2012-09-25
jprocter
JAL-1031 JAL-1032 if selection is non-null but empty...
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commitdiff
2012-09-25
jprocter
JAL-1010 write validated value back to text field to...
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commitdiff
2012-09-25
jprocter
JAL-1173 - trap redraw buffer OOM errors. needs a test...
tree
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commitdiff
2012-09-25
jprocter
JAL-1173 try to catch OOMs when loading annotation...
tree
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commitdiff
2012-09-24
jprocter
formatting
tree
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commitdiff
2012-09-24
jprocter
JAL-958 enable logo display when normalise option selected
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commitdiff
2012-09-24
jprocter
only recalc group conservation after last sequence...
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commitdiff
2012-09-24
jprocter
JAL-516 JAL-759 JAL-1066 group & group colourscheme...
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commitdiff
2012-09-24
jprocter
JAL-958 JAL-966 refactor group/alignment associated...
tree
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commitdiff
2012-09-21
jprocter
JAL-1165 allow progress indicators on the web service...
tree
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commitdiff
2012-09-21
jprocter
JAL-1130 jalview spinning icon for web service dialog
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commitdiff
2012-09-21
jprocter
JAL-1130 splashscreen logo
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commitdiff
2012-09-19
jprocter
JAL-1130 new logo in help, splash screen and web servic...
tree
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commitdiff
2012-09-19
jprocter
JAL-1130 new logo spinner in webservices status window
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commitdiff
2012-09-19
jprocter
JAL-1130 made SplashScreen able to be a dialog that...
tree
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commitdiff
2012-09-19
jprocter
JAL-1130 refactored standard hyperlink handler code...
tree
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commitdiff
2012-09-19
jprocter
JAL-1130 trial view of new logo on splashscreen.
tree
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commitdiff
2012-09-06
jprocter
JAL-958 flag indicating if visualization settings for...
tree
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commitdiff
2012-09-06
jprocter
JAL-958 store/recover normalised flag
tree
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commitdiff
2012-09-05
jprocter
JAL-1136 give pre-existing custom settings a special...
tree
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commitdiff
2012-09-05
jprocter
JAL-1111 allow news reader window to be moved even...
tree
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commitdiff
2012-09-05
jprocter
JAL-976 fix AACon name typo in source and GUI
tree
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commitdiff
2012-09-03
jprocter
JAL-591 adapt option layout to width of dialog box
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commitdiff
2012-09-03
jprocter
JAL-1111 news reader shouldn't be modal.
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commitdiff
2012-09-03
jprocter
JAL-1111 doh - helps if you pass modality flag onto...
tree
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commitdiff
2012-09-02
jprocter
JAL-812 only trigger alignment redraw and calculation...
tree
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commitdiff
2012-09-02
jprocter
JAL-1007 refactored code and patched calculation bug
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commitdiff
2012-09-02
jprocter
JAL-1158 - request focus after opening window.
tree
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commitdiff
2012-09-02
jprocter
JAL-1062 use matching region or first section of sequen...
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commitdiff
2012-09-01
jprocter
JAL-1075 sort nodes alphabetically
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commitdiff
2012-09-01
jprocter
JAL-1160 support horizontal mouse wheel scrolling events
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commitdiff
2012-09-01
jprocter
JAL-1161 JAL-1160 implement custom mousewheel listener...
tree
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commitdiff
2012-09-01
jprocter
javadoc
tree
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commitdiff
2012-08-31
jprocter
Merge branch 'develop' into menard
tree
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commitdiff
2012-08-31
jprocter
JAL-1015 new menu items in desktop popup menu for creat...
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commitdiff
2012-08-31
jprocter
JAL-1157 new window for displaying HTML formatted text...
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commitdiff
2012-08-31
jprocter
JAL-1015 refactor tooltip html generation code to jalvi...
tree
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commitdiff
2012-08-29
jprocter
JAL-1155 fix panel length calculation for grouped graph...
tree
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commitdiff
2012-08-29
jprocter
JAL-1066 limit available rows to per-sequence when...
tree
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commitdiff
2012-08-29
jprocter
formatting
tree
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commitdiff
2012-08-29
jprocter
JAL-1153 JAL-1155 improved layout and allowed labels...
tree
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commitdiff
2012-08-29
jprocter
JAL-1153 new runtime property set to first non-null...
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commitdiff
2012-08-29
jprocter
JAL-48 patch NPE when encountering an alignment window...
tree
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commitdiff
2012-08-28
jprocter
JAL-1066 basic gui and functionality for per-sequence...
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commitdiff
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