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JAL-2629 method refactor and menu tidying
[jalview.git]
/
src
/
jalview
/
gui
/
2018-05-22
gmungoc
JAL-2629 method refactor and menu tidying
tree
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commitdiff
2018-05-15
gmungoc
JAL-1264 exclude score-only from 'Add Reference Annotat...
tree
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commitdiff
2018-05-14
gmungoc
JAL-2989 refactoring to reduce code duplication
tree
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commitdiff
2018-05-14
gmungoc
JAL-2711 show short file names in search database combo box
tree
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commitdiff
2018-05-14
gmungoc
JAL-2989 support value display names for Option or...
tree
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commitdiff
2018-05-11
gmungoc
JAL-2985 show label instead of checkbox for a required...
tree
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commitdiff
2018-05-10
gmungoc
JAL-591 reduced updating by checking/setting 'updating...
tree
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commitdiff
2018-05-10
gmungoc
JAL-2629 handle decline 'Add Database'
tree
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commitdiff
2018-05-10
gmungoc
JAL-591 show choice list with a single option
tree
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commitdiff
2018-05-09
gmungoc
JAL-2714 HMMSearch cutoff by E-Value, Score or None
tree
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commitdiff
2018-05-08
gmungoc
Merge branch 'develop' into features/mchmmer
tree
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commitdiff
2018-05-07
gmungoc
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-05-07
Jim Procter
JAL-2960 don’t override a swing method and create infin...
tree
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commitdiff
2018-05-04
Jim Procter
JAL-2948 transfer features/annotation is now available...
tree
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commitdiff
2018-05-04
Jim Procter
JAL-2960 raise the structure view after adding structur...
tree
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commitdiff
2018-04-30
Jim Procter
Merge branch 'bug/JAL-2899' into releases/Release_2_10_...
tree
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commitdiff
2018-04-24
gmungoc
JAL-2959 no Print dialog shown if Page Format is Cancelled
tree
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commitdiff
2018-04-24
gmungoc
JAL-591 use constant for Preferences key
tree
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commitdiff
2018-04-24
gmungoc
JAL-2616 unused field removed
tree
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commitdiff
2018-04-23
gmungoc
JAL-2956 save/restore HMMER profile to/from Jalview...
tree
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commitdiff
2018-04-23
gmungoc
JAL-2957 don't validate input on arrow keys
tree
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commitdiff
2018-04-23
gmungoc
JAL-591 ensure slider hidden if text input field only
tree
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commitdiff
2018-04-20
gmungoc
JAL-591 slider scale factor now derived from min-max...
tree
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commitdiff
2018-04-20
gmungoc
JAL-591 tidy and comment code
tree
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commitdiff
2018-04-20
gmungoc
JAL-591 OptionBox FlowLayout, tweaks to wrapping of...
tree
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commitdiff
2018-04-19
gmungoc
JAL-591 utility method renamed and slightly generalised
tree
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commitdiff
2018-04-18
gmungoc
Merge branch 'develop' into features/mchmmer
tree
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commitdiff
2018-04-18
gmungoc
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-04-17
gmungoc
Merge branch 'features/mchmmer' of https://source.jalvi...
tree
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commitdiff
2018-04-17
gmungoc
JAL-2629 choice of hmm profile now a parameter not...
tree
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commitdiff
2018-04-17
Mungo Carstairs
JAL-2937 working Cygwin bash execution of hmmbuild...
tree
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commitdiff
2018-04-16
gmungoc
JAL-2629 JAL-2937 remove redundant is/setHMMConsensusSe...
tree
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commitdiff
2018-04-16
gmungoc
JAL-2937 use preferences for presets, simplify some...
tree
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commitdiff
2018-04-12
gmungoc
JAL-1847 minor post-review updates
tree
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commitdiff
2018-04-12
gmungoc
JAL-2944 tidies for review comments
tree
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commitdiff
2018-04-09
Mungo Carstairs
JAL-2937 Cygwin path preference, method refactoring
tree
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commitdiff
2018-04-09
Mungo Carstairs
JAL-2069 typo
tree
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commitdiff
2018-04-09
Jim Procter
JAL-2944 ’new view’ and ‘add to view’ button rather...
tree
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commitdiff
2018-04-09
Jim Procter
JAL-1847 superpose checkbox in structure chooser
tree
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commitdiff
2018-04-09
Jim Procter
JAL-1847 JAL-2944 make superposition step a configurabl...
tree
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commitdiff
2018-04-05
Jim Procter
JAL-2945 provide access to last highlighted results
tree
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commitdiff
2018-04-05
Jim Procter
JAL-2944 open selected structures in existing or a...
tree
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commitdiff
2018-04-05
Jim Procter
JAL-2944 methods to check existence and get a title...
tree
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commitdiff
2018-04-05
Jim Procter
JAL-2944 allow StructureViewer proxy to be created...
tree
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commitdiff
2018-04-05
Jim Procter
JAL-2944 get viewer’s title via toString()
tree
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commitdiff
2018-04-05
Jim Procter
JAL-2944 expose UI update methods in api
tree
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commitdiff
2018-04-05
Jim Procter
JAL-2944 remove modal prompt logic and expose methods...
tree
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commitdiff
2018-04-05
Jim Procter
JAL-2944 pull up structure viewer discovery routine...
tree
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commitdiff
2018-03-30
gmungoc
JAL-2629 combine with/without defaults in one method...
tree
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commitdiff
2018-03-30
gmungoc
JAL-2939 field/method naming more consistent
tree
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commitdiff
2018-03-30
gmungoc
JAL-2629 select HMM selects sequence under cursor
tree
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commitdiff
2018-03-26
gmungoc
JAL-2939 pull up set/IsNormalise[HMM]SequenceLogo
tree
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commitdiff
2018-03-26
gmungoc
JAL-2939 unused action handler methods removed
tree
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commitdiff
2018-03-22
gmungoc
JAL-2929 unit test, tidy unused/unneeded fields/parameters
tree
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commitdiff
2018-03-21
Jim Procter
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-03-21
Jim Procter
JAL-2754 fix eclipse compilation error about referencin...
tree
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commitdiff
2018-03-21
gmungoc
JAL-2629 tweaks to Information annotation updating
tree
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commitdiff
2018-03-20
gmungoc
Merge branch 'develop' into features/mchmmer
tree
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commitdiff
2018-03-16
gmungoc
Merge remote-tracking branch 'origin/releases/Release_2...
tree
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commitdiff
2018-03-16
gmungoc
JAL-2922 update FeatureRenderer and repaint feature...
tree
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commitdiff
2018-03-16
gmungoc
Merge branch 'develop' into features/mchmmer
tree
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commitdiff
2018-03-16
gmungoc
Merge branch 'bug/JAL-2865removeGC' into develop
tree
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commitdiff
2018-03-16
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2018-03-13
gmungoc
JAL-2913 use FIGURE_FIXEDIDWIDTH (not FIGURE_USERIDWIDTH)
tree
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commitdiff
2018-03-08
gmungoc
Merge remote-tracking branch 'origin/releases/Release_2...
merges/JAL-2906_update2_11_from_2_10_4
tree
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commitdiff
2018-03-08
gmungoc
JAL-2930 use MouseWheelEvent.getPreciseWheelRotation...
tree
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commitdiff
2018-03-07
Jim Procter
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-03-07
gmungoc
Merge branch 'bugs/JAL-2922' into releases/Release_2_10...
tree
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commitdiff
2018-03-07
gmungoc
JAL-2922 [2] not [1] for Boolean column of table
bugs/JAL-2922
tree
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commitdiff
2018-03-07
gmungoc
Merge branch 'bugs/JAL-2922' into releases/Release_2_10...
tree
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commitdiff
2018-03-07
gmungoc
Merge branch 'bug/JAL-2924nullTooltip' into releases...
tree
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commitdiff
2018-03-07
gmungoc
JAL-2913 use FIGURE_USERIDWIDTH for fixed id width...
tree
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commitdiff
2018-03-07
gmungoc
JAL-2629 storage and lifecycle of alignment/group HMM...
tree
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commitdiff
2018-03-01
gmungoc
JAL-2629 revising hmmer annotation updating (wip)
tree
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commitdiff
2018-02-28
gmungoc
JAL-2924 no tooltip over null annotation positions
bug/JAL-2924nullTooltip
tree
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commitdiff
2018-02-27
gmungoc
JAL-2717 JAL-2668 fixes to HMMER colour scheme display...
tree
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commitdiff
2018-02-27
Jim Procter
Merge branch 'feature/JAL-2759' into merge/JAL-2759_2104
tree
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commitdiff
2018-02-27
Jim Procter
fix for JAL-2922 - update states all at once and then...
tree
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commitdiff
2018-02-22
Jim Procter
Merge branch 'feature/JAL-984splitAdjuster' into releas...
tree
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commitdiff
2018-02-22
Jim Procter
JAL-984 ID width adjuster needs to be white !
tree
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commitdiff
2018-02-22
Jim Procter
Merge branch 'bug/JAL-2666' into releases/Release_2_10_...
tree
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commitdiff
2018-02-22
Jim Procter
Merge branch 'feature/JAL-984splitAdjuster' into releas...
tree
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commitdiff
2018-02-22
Jim Procter
JAL-984 remove all references to idwidth.gif and use...
tree
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commitdiff
2018-02-22
Jim Procter
Merge branch 'feature/JAL-984splitAdjuster' into releas...
tree
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commitdiff
2018-02-22
Jim Procter
JAL-984 remove commented/unnecessary if clause
tree
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commitdiff
2018-02-22
gmungoc
JAL-2629 tidy unit tests, constants etc
tree
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commitdiff
2018-02-21
Jim Procter
Merge branch 'bug/JAL-2778again' into releases/Release_...
tree
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commitdiff
2018-02-21
Jim Procter
JAL-2778 reinstate transparent windows to avoid ugly...
bug/JAL-2778again
tree
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commitdiff
2018-02-21
gmungoc
JAL-2629 simplifying method signatures in Hmmer command...
tree
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commitdiff
2018-02-21
kiramt
JAL-2778 Adjust cursor changes in overview panel
tree
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commitdiff
2018-02-21
kiramt
JAL-2778 Revert back to old synchronisation
tree
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commitdiff
2018-02-20
gmungoc
Merge branch 'develop' into features/mchmmer
tree
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commitdiff
2018-02-20
Jim Procter
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-02-19
gmungoc
JAL-2629 refactoring of Hmmer preferences
tree
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commitdiff
2018-02-19
gmungoc
JAL-2629 partial refactoring of Hmmer command classes
tree
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commitdiff
2018-02-13
Jim Procter
JAL-2781 refactor ‘trim retrieved sequence’ preference...
tree
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commitdiff
2018-02-08
gmungoc
JAL-2666 basic initial fix for split screen scroll bug
tree
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commitdiff
2018-02-07
Jim Procter
JAL-2902 catch case where viewer is closed (therefore...
tree
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commitdiff
2018-02-07
Jim Procter
JAL-2902 thread off dialog close op to avoid deadlock...
tree
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commitdiff
2018-02-07
gmungoc
JAL-2808 ensure pattern field re-enabled when needed...
tree
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commitdiff
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