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JAL-3878 update branch from 2.12 merge from 2.11.2
[jalview.git]
/
src
/
jalview
/
gui
/
2020-06-04
gmungoc
JAL-3446 post-merge unit test fixes, formatting
tree
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commitdiff
2020-06-03
BobHanson
JAL-3446 from JAL-3253 Discoverers
tree
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commitdiff
2020-06-03
BobHanson
JAL-3446 from JAL-3253 ApplicationSingletonProvider...
tree
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commitdiff
2020-06-02
BobHanson
JAL-3446 from JAL-3253 ApplicationSingletonProvider...
tree
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commitdiff
2020-06-02
BobHanson
JAL-3446 JAL-3401 from JAL-3253 HoldRepaint and SeqCanv...
tree
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commitdiff
2020-06-02
BobHanson
JAL-3446 from JAL-3253-applet Desktop and Jws2Discovere...
tree
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commitdiff
2020-06-02
BobHanson
JAL-3446 JAL-3401 from JAL-3253-applet AlignmentPanel...
tree
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commitdiff
2020-06-02
BobHanson
Preferences/StructureViewer fix
tree
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commitdiff
2020-06-02
BobHanson
JAL-3446 test for simpler key mask operation
tree
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commitdiff
2020-06-02
BobHanson
JAL-3446 JAL-3253 Preferences
tree
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commitdiff
2020-06-02
BobHanson
JAL-3626 from JAL-3253-applet Jalview.java
tree
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commitdiff
2020-06-02
BobHanson
JAL-3626 from JAL-3253-applet Cache applicationProperti...
tree
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commitdiff
2020-06-02
BobHanson
JAL-3626 from JAL-3253-applet web page embedding
tree
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commitdiff
2020-06-01
BobHanson
JAL-3626 from JAL-3253-applet JalviewLite scrollTo...
tree
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commitdiff
2020-06-01
BobHanson
JAL-3626 from JAL-3253-applet CalculationChooser
tree
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commitdiff
2020-06-01
BobHanson
JAL-3626 from JAL-3253-applet StructureViewer/Chooser
tree
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commitdiff
2020-06-01
BobHanson
JAL-3262 from JAL-3253-applet temp. Desktop instance...
tree
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commitdiff
2020-06-01
BobHanson
JAL-3262 from JAL-3253-applet JalviewApp integration
tree
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commitdiff
2020-06-01
BobHanson
JAL-3262 from JAL-3253-applet JalviewApp integration
tree
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commitdiff
2020-06-01
BobHanson
JAL-3262 from JAL-3253-applet Preferences final static...
tree
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commitdiff
2020-06-01
BobHanson
JAL-3262 from JAL3253-applet core_jvjmol.z.js static...
tree
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commitdiff
2020-05-29
gmungoc
JAL-2422 test updated
tree
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commitdiff
2020-05-29
gmungoc
JAL-3551 null pointer defence while structure files...
feature/JAL-3551Pymol
tree
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commitdiff
2020-05-26
gmungoc
JAL-1761 pattern for structure viewer construction...
tree
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commitdiff
2020-05-24
Jim Procter
JAL-3407 redact Java 8 incompatible '<>' with anonymous...
tree
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commitdiff
2020-05-21
gmungoc
JAL-3551 copy Jalview features to Pymol 'p' (with pull...
tree
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commitdiff
2020-05-20
gmungoc
JAL-3626 use Viewer.scriptWait() to send Jmol commands...
tree
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commitdiff
2020-05-19
gmungoc
Merge branch 'develop' into feature/JAL-3551Pymol
tree
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commitdiff
2020-05-18
Jim Procter
Merge branch 'alpha/JAL-3362_Jalview_212_alpha' into...
tree
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commitdiff
2020-05-18
gmungoc
Merge branch 'Jalview-JS/develop' into develop
tree
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commitdiff
2020-05-15
gmungoc
JAL-3551 pull up Close Viewer dialog to base class
tree
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commitdiff
2020-05-15
gmungoc
Merge branch 'feature/JAL-3551Pymol' into feature/JAL...
tree
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commitdiff
2020-05-15
gmungoc
JAL-3551 raise label on ('highlight') structure residue...
tree
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commitdiff
2020-05-11
gmungoc
JAL-2422 JAL-3551 viewer text/variables generalised...
tree
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commitdiff
2020-05-11
gmungoc
JAL-2422 restore saved ChimeraX session from project
tree
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commitdiff
2020-05-01
gmungoc
Merge branch 'bug/JAL-3613emblCDSTracking' into release...
tree
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commitdiff
2020-05-01
gmungoc
JAL-3613 check sequence overlap when matching search...
tree
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commitdiff
2020-04-30
gmungoc
JAL-3551 save structure viewer session refactorings...
tree
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commitdiff
2020-04-25
gmungoc
Merge branch 'develop' into feature/JAL-3551Pymol
tree
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commitdiff
2020-04-23
Jim Procter
Merge branch 'develop' into alpha/JAL-3362_Jalview_212_...
tree
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commitdiff
2020-04-21
Jim Procter
Merge branch 'documentation/JAL-3407_2.11.1_release...
Release_2_11_1_0
tree
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commitdiff
2020-04-21
Jim Procter
JAL-3407 add GPL license to Jalview source files
tree
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commitdiff
2020-04-21
Jim Procter
Merge branch 'develop' into releases/Release_2_11_1_Branch
tree
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commitdiff
2020-04-21
gmungoc
JAL-3603 load annotation file from RELATIVE_URL in...
tree
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commitdiff
2020-04-16
BobHanson
JAL-3587 Load Project bug
tree
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commitdiff
2020-04-16
gmungoc
JAL-3567 report mapped location for virtual features...
tree
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commitdiff
2020-04-14
gmungoc
JAL-3583 remove debug logging, Javadoc added
tree
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commitdiff
2020-04-12
gmungoc
JAL-3583 consistent last[Formatted]Tooltip, show once...
tree
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commitdiff
2020-04-07
soares
merge from develop: Most of the changes
tree
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commitdiff
2020-04-06
Jim Procter
Merge branch 'develop' into releases/Release_2_11_1_Branch
tree
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commitdiff
2020-04-06
Jim Procter
JAL-3407 redact java 8 incompatible type inference
tree
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commitdiff
2020-04-06
gmungoc
JAL-3581 no hidden sequence marker if hidden markers...
tree
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commitdiff
2020-04-06
Jim Procter
Merge branch 'develop' into releases/Release_2_11_1_Branch
tree
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commitdiff
2020-04-06
gmungoc
JAL-3581 no hidden sequence marker if hidden markers...
tree
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commitdiff
2020-04-06
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
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commitdiff
2020-04-06
gmungoc
JAL-3579 no Feature Editor if features not shown
tree
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commitdiff
2020-03-31
Jim Procter
Merge branch 'documentation/Release_2_11_1_Branch'...
tree
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commitdiff
2020-03-30
gmungoc
JAL-3210 debug logging commented out
tree
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commitdiff
2020-03-30
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
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commitdiff
2020-03-19
gmungoc
JAL-3305 don't propagate an empty SelectionGroup to...
tree
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commitdiff
2020-03-16
gmungoc
JAL-3551 tidying, improved commands, fix Jmol model...
tree
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commitdiff
2020-03-13
gmungoc
JAL-3551 working proof of concept of Jalview driving...
tree
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commitdiff
2020-03-09
gmungoc
Merge branch 'develop' into feature/JAL-2422ChimeraX
tree
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commitdiff
2020-03-09
gmungoc
JAL-3549 JAL-3305 no Sort By Score / Density if no...
tree
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commitdiff
2020-03-09
gmungoc
JAL-3412 update layout whenever desired id width changes
testbuild/JAL-3412_getIdWidth_test
tree
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commitdiff
2020-03-06
gmungoc
Merge branch 'feature/JAL-3468featureDescriptionEllipsi...
tree
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commitdiff
2020-03-06
gmungoc
JAL-3468 i18n and additional unit tests
feature/JAL-3468featureDescriptionEllipsis
tree
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commitdiff
2020-03-05
gmungoc
Merge branch 'releases/Release_2_11_1_Branch' of https...
tree
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commitdiff
2020-03-05
gmungoc
JAL-3303 suppressed for 2.11.1
tree
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commitdiff
2020-03-03
soares
JAL-3468 Adapted methods to report how many features...
tree
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commitdiff
2020-03-02
Jim Procter
JAL-3407 redact Java 8 incompatible '<>' with anonymous...
tree
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commitdiff
2020-02-28
gmungoc
JAL-3518 basic refactoring / pull up of superposeStruct...
tree
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commitdiff
2020-02-27
Jim Procter
Merge branch 'bug/JAL-3412idWidthDiscrepancy' into...
bug/JAL-3412idWidthDiscrepancy
tree
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commitdiff
2020-02-21
gmungoc
JAL-3518 more extraction of ChimeraX commands as overrides
tree
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commitdiff
2020-02-21
Jim Procter
JAL-3186 ensure transparency slider position is updated...
tree
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commitdiff
2020-02-21
Jim Procter
JAL-3186 avoid repainting twice in splitframe
tree
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commitdiff
2020-02-21
Jim Procter
Merge branch 'develop' into features/JAL-3187_uitweaks
tree
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commitdiff
2020-02-21
gmungoc
JAL-2422 tidy of methods and parameters
tree
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commitdiff
2020-02-21
gmungoc
JAL-2422 general pull-up/removal of common or unused...
tree
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commitdiff
2020-02-20
Jim Procter
JAL-3187 nice to have enabling/disabling of apply/cance...
features/JAL-3187_uitweaks
tree
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commitdiff
2020-02-20
Jim Procter
JAL-3187 use the recommended way of catching tab select...
tree
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commitdiff
2020-02-20
gmungoc
JAL-3187 repaint complement after loading on features
tree
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commitdiff
2020-02-20
Jim Procter
JAL-3187 individual feature settings panel has revert...
tree
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commitdiff
2020-02-20
gmungoc
JAL-2422 pull-up refactoring of structure commands...
tree
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commitdiff
2020-02-19
Jim Procter
JAL-3187 i18n for titles in windows/tabs
tree
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commitdiff
2020-02-19
Jim Procter
JAL-3535 todo re titles for CDS and Protein views in...
tree
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commitdiff
2020-02-19
Jim Procter
JAL-3187 - tabbed pane is nulled when feature settings...
tree
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commitdiff
2020-02-19
Jim Procter
JAL-3187 JAL-2764 close feature settings when parent...
tree
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commitdiff
2020-02-19
Jim Procter
JAL-3538 anti-aliasing enabled by default
tree
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commitdiff
2020-02-18
Jim Procter
JAl-3187 JAL-3535 JAL-3534 update open feature settings...
tree
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commitdiff
2020-02-17
Jim Procter
JAL-3534 patch for simple case (Protein or Nucleotide...
tree
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commitdiff
2020-02-17
Jim Procter
JAL-3187 fix for JAL-3533 on CDS/Protein tabbed feature...
tree
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commitdiff
2020-02-17
Jim Procter
JAL-3187 JAL-3533 JAL-3535 set feature settings dialog...
tree
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commitdiff
2020-02-17
Jim Procter
JAL-3187 better semantics for feature settings closed...
tree
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commitdiff
2020-02-14
Jim Procter
JAL-3187 alternative solution - gather feature settings...
tree
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commitdiff
2020-02-12
Jim Procter
JAL-3187 first stab at ‘show CDS/Protein Settings’...
tree
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commitdiff
2020-02-12
Jim Procter
JAL-3187 view controller UI api method to show feature...
tree
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commitdiff
2020-02-12
Jim Procter
JAL-3187 convenience method on SplitContainerI to retri...
tree
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commitdiff
2020-02-06
gmungoc
JAL-3509 JAL-1842 minor tidying of code
tree
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commitdiff
2020-02-06
gmungoc
JAL-3509 better placement of call to notifyFeaturesChan...
tree
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commitdiff
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