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JAL-2962 option to offer BLOSUM62 for nucleotide PCA
[jalview.git]
/
src
/
jalview
/
gui
/
2017-10-23
Jim Procter
Merge branch 'bug/JAL-2739' into develop
tree
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commitdiff
2017-10-23
gmungoc
JAL-2776 repaint everything on toggle group colour
bug/JAL-2776toggleGroupColour
tree
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commitdiff
2017-10-20
Jim Procter
JAL-2779 keep a reference to original Aqua manager...
tree
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commitdiff
2017-10-20
Jim Procter
JAL-2779 remove OSX platform specific import (not neede...
tree
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commitdiff
2017-10-20
gmungoc
Push 1793 latest to spike branch
tree
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commitdiff
2017-10-20
gmungoc
JAL-2609 fully erase scale above, tidy code change
tree
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commitdiff
2017-10-19
gmungoc
JAL-2609 adjustments for test findings
tree
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commitdiff
2017-10-19
gmungoc
JAL-2755 find gene loci for fetched xrefs where possible
tree
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commitdiff
2017-10-19
kiramt
Merge branch 'develop' into bug/JAL-2609attemptedmerge
tree
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commitdiff
2017-10-18
Jim Procter
JAL-2779 switch order for updating the current alignmen...
tree
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commitdiff
2017-10-18
Jim Procter
JAL-2779 remove dead code
tree
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commitdiff
2017-10-18
Jim Procter
JAL-2779 hook in our own AquaInternalFrameManager when...
tree
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commitdiff
2017-10-18
Jim Procter
JAL-2779 JAL-1551 source formatting
tree
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commitdiff
2017-10-18
Jim Procter
JAL-2779 patch so closing most recent frame doesn’t...
tree
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commitdiff
2017-10-18
Jim Procter
JAL-2779 original version of AquaInternalFrame Manager
tree
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commitdiff
2017-10-18
Jim Procter
Merge branch 'bugs/JAL-2777_whitespaceChain' into develop
tree
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commitdiff
2017-10-18
Jim Procter
JAL-2777 remove duplicate code outside conditional...
tree
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commitdiff
2017-10-17
Jim Procter
JAL-2773 renamed flags for clarity
tree
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commitdiff
2017-10-17
Jim Procter
JAL-2777 noticed exception raised on construction of...
tree
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commitdiff
2017-10-16
kiramt
JAL-2775 added repaint clipping
tree
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commitdiff
2017-10-13
kiramt
JAL-2774 Created single event for update to both start...
tree
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commitdiff
2017-10-12
Jim Procter
JAL-2773 add new flag to paintAlignment(updateOverview...
features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview
tree
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commitdiff
2017-10-11
gmungoc
JAL-2225 updates for review comments, Checkstyle
tree
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commitdiff
2017-10-11
gmungoc
JAL-2609 tidy label width code, some checkstyle warnings
tree
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commitdiff
2017-10-11
kiramt
JAL-2609attemptedmerge tidy
tree
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commitdiff
2017-10-10
kiramt
Merge remote-tracking branch 'origin/features/JAL-2609f...
tree
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commitdiff
2017-10-10
kiramt
JAL-2690attemptedmerge seems to work
tree
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commitdiff
2017-10-10
Jim Procter
JAL-2392 wrap public progress bar methods as InvokeLate...
tree
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commitdiff
2017-10-10
Jim Procter
JAL-2392 formatting
tree
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commitdiff
2017-10-10
Jim Procter
Merge branch 'codereviews/JAL-1990_IProgressIndicator_j...
tree
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commitdiff
2017-10-10
kiramt
JAL-2690attemptedmerge partial merge
tree
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commitdiff
2017-10-05
gmungoc
JAL-2738 update spikes/mungo
tree
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commitdiff
2017-10-05
gmungoc
JAL-2744 add score to feature details report, descripti...
tree
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commitdiff
2017-10-04
gmungoc
JAL-2744 handle null features list
tree
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commitdiff
2017-10-03
kiramt
JAL-2674 testing
tree
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commitdiff
2017-10-03
kiramt
JAL-2674 working refactor of drawPanel iteration
tree
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commitdiff
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
tree
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commitdiff
2017-10-03
kiramt
JAL-2674 2nd attempt to refactor seqcanvas drawing...
tree
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commitdiff
2017-09-29
kiramt
JAL-2674 finish with iterators for now
tree
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commitdiff
2017-09-29
kiramt
JAL=2674 Removed getHiddenColumnsCopy
tree
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commitdiff
2017-09-29
kiramt
JAL-2674 reverted attempt at visible regions iterator
tree
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commitdiff
2017-09-28
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
tree
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commitdiff
2017-09-28
kiramt
JAL-2647 more iterators
tree
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commitdiff
2017-09-28
gmungoc
JAL-2036 set menus after fully loading AlignFrame
tree
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commitdiff
2017-09-28
gmungoc
JAL-2744 simple Feature Details report from Popup menu
tree
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commitdiff
2017-09-28
gmungoc
JAL-2744 refactor PopupMenu constructor to enable addin...
tree
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commitdiff
2017-09-26
kiramt
JAL-2674 more List<int[]> -> HiddenColumns copy changes
tree
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commitdiff
2017-09-26
kiramt
JAL-2674 Changes to pasting
tree
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commitdiff
2017-09-26
kiramt
Merge remote-tracking branch 'origin/bug/JAL-2740'...
tree
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commitdiff
2017-09-26
kiramt
JAL-2740 removed unwanted code, added unit test
tree
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commitdiff
2017-09-26
kiramt
JAL-2674 HiddenColumns interface tidies
tree
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commitdiff
2017-09-26
kiramt
JAL-2647 Added iterators and associated tests and bench...
tree
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commitdiff
2017-09-22
gmungoc
JAL-2738 correct handling of reverse strand genes
tree
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commitdiff
2017-09-22
kiramt
Merge remote-tracking branch 'origin/bug/JAL-2739'...
tree
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commitdiff
2017-09-22
kiramt
JAL-2739 Fix ported to 2.10.3
tree
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commitdiff
2017-09-22
kiramt
JAL-2674 add bounds to findHiddenRegionPositions
tree
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commitdiff
2017-09-21
kiramt
JAL-2674 Made gui ScalePanel reveal menus consistent...
tree
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commitdiff
2017-09-21
gmungoc
JAL-2738 PoC of Load VCF file on to gene sequence
tree
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commitdiff
2017-09-18
gmungoc
Merge remote-tracking branch 'origin/patch/JAL-2732...
tree
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commitdiff
2017-09-18
gmungoc
JAL-2728 fine tuned initial split of split frame view
tree
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commitdiff
2017-09-15
Jim Procter
JAL-1625 ensure we don’t regress on JAL-20 - we always...
patch/JAL-2732
tree
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commitdiff
2017-09-15
Jim Procter
JAL-2733 redraw after changing the memory status displa...
tree
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commitdiff
2017-09-15
Jim Procter
JAL-1625 JAL-1900 preserve the original DesktopManager...
tree
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commitdiff
2017-09-15
Jim Procter
JAL-1900 JAL-1625 back out OSX specific double buffer...
tree
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commitdiff
2017-09-15
Jim Procter
JAL-1551 standard code formatting
tree
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commitdiff
2017-09-15
Jim Procter
JAL-2732 force a redraw after resize/drag to clear...
tree
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commitdiff
2017-09-15
gmungoc
JAL-2728 use right denominator for min/max ratio calcul...
bug/JAL-2728splitFrameDivision
tree
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commitdiff
2017-09-15
gmungoc
JAL-2728 limit divider to ensure seqs visible (wip!)
tree
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commitdiff
2017-09-15
gmungoc
JAL-741 add tooltip to feature group checkbox
tree
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commitdiff
2017-09-14
gmungoc
JAL-2727 null more fields in AlignmentViewport.dispose...
tree
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commitdiff
2017-09-14
gmungoc
JAL-2727 method to check if PCAPanel thread is working
tree
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commitdiff
2017-09-13
gmungoc
JAL-2727 null additional references on close
tree
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commitdiff
2017-09-12
gmungoc
Merge branch 'bug/JAL-2721fastPaintNPE' into develop
tree
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commitdiff
2017-09-12
gmungoc
JAL-2727 ensure ViewportRanges (and gapcounts) are...
tree
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commitdiff
2017-09-07
gmungoc
JAL-2511 invalidate scale panel holder on font change...
tree
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commitdiff
2017-09-07
gmungoc
JAL-2511 invalidate scale panel holder on font change...
bug/JAL-2511idAlignment
tree
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commitdiff
2017-09-06
Jim Procter
JAL-2587 makes sure idWidthAdjuster is resized when...
tree
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commitdiff
2017-09-06
Jim Procter
JAL-2587 makes sure idWidthAdjuster is resized when...
tree
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commitdiff
2017-09-06
gmungoc
JAL-2721 no fastPaint if img has been nulled by fontCha...
tree
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commitdiff
2017-09-06
gmungoc
JAL-2721 no fastPaint if img has been nulled by fontCha...
bug/JAL-2721fastPaintNPE
tree
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commitdiff
2017-09-06
Jim Procter
Merge branch 'feature/JAL-2587' into releases/Release_2...
tree
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commitdiff
2017-09-06
Jim Procter
Merge branch 'releases/Release_2_10_2b1_Branch' into...
tree
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commitdiff
2017-09-06
Jim Procter
JAL-2724 patch to fix ClassCastException - method shoul...
tree
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commitdiff
2017-09-06
gmungoc
Merge remote-tracking branch 'origin/bug/JAL-2722'...
portforward/JAL-2675_2102b1to2103
tree
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commitdiff
2017-09-06
kiramt
JAL-2587 Removed dissolve
tree
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commitdiff
2017-09-05
gmungoc
JAL-2665 check for null selection group image
tree
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commitdiff
2017-09-05
Jim Procter
Merge branch 'bug/JAL-2722' into releases/Release_2_10_...
tree
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commitdiff
2017-09-05
gmungoc
JAL-2665 check for null selection group image
tree
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commitdiff
2017-09-05
kiramt
JAL-2722 Reinstate allGroups value setting in getResidu...
tree
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commitdiff
2017-09-05
Jim Procter
Merge branch 'bug/JAL-2665-2.10.3' into portforward...
tree
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commitdiff
2017-09-05
Jim Procter
Merge branch 'master' into portforward/JAL-2675_2102b1t...
tree
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commitdiff
2017-09-05
gmungoc
JAL-2225 unused collateForPdb removed
tree
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commitdiff
2017-09-05
gmungoc
JAL-2225 fix bug in collating unique pdb files and...
tree
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commitdiff
2017-09-04
Jim Procter
Merge branch 'bug/JAL-2673' into documentation/JAL...
tree
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commitdiff
2017-09-04
kiramt
JAL-2673 turn off update to running flag from scrollUp...
bug/JAL-2673
tree
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commitdiff
2017-09-04
kiramt
JAL-2673 Attempt to stop infinite scrolling etc
tree
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commitdiff
2017-09-04
Jim Procter
JAL-2527 move default colours for applet / application...
tree
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commitdiff
2017-09-04
Jim Procter
Merge branch 'releases/Release_2_10_2b1_Branch' of...
tree
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commitdiff
2017-09-04
kiramt
JAL-2611 reinstated missed commit
tree
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commitdiff
2017-09-03
Jim Procter
Merge branch 'feature/JAL-2587' into documentation...
tree
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commitdiff
next