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JAL-4159 peek in a Jalview project's PCA viewer's title to decide if it is a "pasimap...
[jalview.git] / src / jalview / gui /
2024-05-24 Jim ProcterJAL-4257 JAL-4159 JAL-789 tidy up passing of score... tree | commitdiff
2024-05-24 James ProcterJAL-789 pairwise alignment via calculations dialog... tree | commitdiff
2024-05-24 Jim ProcterMerge branch 'jims/feature/JAL-4159_pasimap' into featu... tree | commitdiff
2024-05-23 Jim ProcterJAL-4159 fix sense of console/alignment output suppress... tree | commitdiff
2024-05-23 Jim ProcterJAL-4159 disable the score model combo box when pasimap... tree | commitdiff
2024-05-23 MorellThomasFix PaSiMap taking scoreModels input and allow AlignSeq... tree | commitdiff
2024-05-22 MorellThomasSave PaSiMap with Jalview Session tree | commitdiff
2024-05-22 MorellThomasRectanuglar selection changed to Mouse Button 3 drag tree | commitdiff
2024-05-21 Jim ProcterJAL-4259 set title using original alignment window... spike/JAL-4159_pasimap_2114_series tree | commitdiff
2024-05-21 Jim ProcterJAL-4159 implement bounds for PASIMAP calculation ... tree | commitdiff
2024-05-21 Jim ProcterJAL-4159 PASiMap currently doesn't support different... tree | commitdiff
2024-05-21 Jim ProcterJAL-4159 sometimes the progress bar may not be availabl... tree | commitdiff
2024-05-21 Jim ProcterMerge branch 'feature/JAL-4159_pasimap' into spike... tree | commitdiff
2024-05-16 Jim ProcterMerge branch 'develop' into feature/JAL-4159_pasimap tree | commitdiff
2024-05-16 Jim ProcterMerge branch 'develop' into feature/JAL-4386_calculate_... tree | commitdiff
2024-05-15 Jim ProcterJAL-4416 TODO for fixing JAL-4415 JAL-3124 - need a... bug/JAL-4416_sview_not_shown_for_local_strucfile tree | commitdiff
2024-05-15 Jim ProcterJAL-4416 ensure the structure view is shown and any... tree | commitdiff
2024-05-15 Jim ProcterJAL-4416 make sure the structure viewer is actually... tree | commitdiff
2024-05-15 Renia CorreyaJAL-4386 Added preferences for secondary structure... tree | commitdiff
2024-05-15 Jim ProcterMerge branch 'bug/JAL-4407_no_sec_str_from_draganddrop_... tree | commitdiff
2024-05-15 Renia CorreyaJAL-4386 - Implementation of retrieving secondary structure tree | commitdiff
2024-05-13 Jim ProcterMerge branch 'develop' into features/JAL-518_justify_se... tree | commitdiff
2024-05-13 Renia CorreyaMerge branch 'feature/JAL-4386_calculate_tree_using_sec... tree | commitdiff
2024-05-13 Renia CorreyaJAL-4386 - Implementation of substitution matrix and... tree | commitdiff
2024-05-10 Jim ProcterJAL-4411 fix typo :( tree | commitdiff
2024-05-10 Jim ProcterJAL-4411 store class of provider in PDBEntry tree | commitdiff
2024-05-01 Renia CorreyaMerge remote-tracking branch 'origin/bug/JAL-4407_no_se... tree | commitdiff
2024-05-01 Jim ProcterJAL-4407 don't transfer 'local' settings - leave as... bug/JAL-4407_no_sec_str_from_draganddrop_to_msa tree | commitdiff
2024-04-30 Renia CorreyaJAL-4392 Merging consensus secondary structure tree | commitdiff
2024-04-30 Renia CorreyaJAL-4386 Comparing secondary structure similarity direc... tree | commitdiff
2024-04-26 Renia CorreyaJAL-4386 Drop down for secondary structure sources... tree | commitdiff
2024-04-18 MorellThomasMerge branch 'test/progressBar' into feature/JAL-4159_p... tree | commitdiff
2024-04-18 MorellThomasImplemented ProgressBar for PaSiMap tree | commitdiff
2024-04-16 Renia CorreyaJAL-4386 Calculate tree using secondary structure annot... tree | commitdiff
2024-04-12 MorellThomasinlcude progress tree | commitdiff
2024-04-09 James ProcterJAL-4390 don't output alignment to text panel and stdou... tree | commitdiff
2024-03-15 MorellThomasAlogirthm working, but still giving slightly off results tree | commitdiff
2024-03-08 Renia CorreyaJAL-4386 Added further checks for sequences that have... tree | commitdiff
2024-03-07 MorellThomasInlcude 8 dimensions tree | commitdiff
2024-03-06 MorellThomasTest version to switch branches tree | commitdiff
2024-01-23 Ben SoaresJAL-4367 Limit right and top adjustments tree | commitdiff
2024-01-23 Ben SoaresJAL-4290 Fix image comparison between gui and headless... tree | commitdiff
2023-12-19 Ben SoaresJAL-4290 Fixed one test tree | commitdiff
2023-12-15 Ben SoaresJAL-4290 Set structureSelectionManager settings more... tree | commitdiff
2023-12-14 James ProcterMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe... tree | commitdiff
2023-12-14 James ProcterMerge branch 'develop' into bug/JAL-2934proportionalScr... bug/JAL-2934proportionalScrolling tree | commitdiff
2023-12-12 James ProcterJAL-4217 don’t try and export an image when Jmol is... tree | commitdiff
2023-12-12 James ProcterJAL-4217 close internal frame on the swing thread to... tree | commitdiff
2023-12-06 James ProcterMerge branch 'bug/JAL-2934proportionalScrolling' into... tree | commitdiff
2023-12-05 MorellThomasCleanup, note: rectangular selection works by holding... tree | commitdiff
2023-12-05 MorellThomasEnable rectangular selection for PaSiMap tree | commitdiff
2023-12-04 MorellThomasNew independent jbgui Panel for PaSiMap. Revert the... tree | commitdiff
2023-12-04 MorellThomasNew GPCAPanel button : output pairwise alignments ... tree | commitdiff
2023-12-01 MorellThomasApplying adjustablenw_params.patch (JAL-4159) tree | commitdiff
2023-11-30 James ProcterJAL-4342 test and patch checking annotation csv export... patch/JAL-4342_emptyannotationsexport tree | commitdiff
2023-11-30 James ProcterPatch fixes JAL-4165 - added to release notes JAL-4351 tree | commitdiff
2023-11-21 James ProcterJAL-4345 patch and release notes patch/JAL-4345_pae_epas1_doubleclick tree | commitdiff
2023-11-15 James ProcterMerge branch 'bug/JAL-4334_unknownstartenduniprotfeatur... tree | commitdiff
2023-11-15 James ProcterMerge branch 'patch/JAL-4222_100s_timeout_on_imagexport... tree | commitdiff
2023-11-15 James ProcterJAL-4273 actually pass startSeq etc on to rendering... tree | commitdiff
2023-11-15 James ProcterJAL-4222 bail if we wait too long for Jmol to save... patch/JAL-4222_100s_timeout_on_imagexport tree | commitdiff
2023-11-15 James ProcterJAL-4090 blocker patch JAL-3772 tidy up groovy console... tree | commitdiff
2023-11-13 James ProcterJAL-4090 JAL-1551 source license tree | commitdiff
2023-11-13 James ProcterJAL-4331 construct and pass on overview title before... tree | commitdiff
2023-11-03 James ProcterJAL-4090 JAL-1551 spotlessApply tree | commitdiff
2023-11-02 James ProcterJAL-4169 fix up urls to faq and documentation tree | commitdiff
2023-11-02 James ProcterJAL-4289 JAL-4253 lower end of group boundary vertical... tree | commitdiff
2023-11-01 James ProcterMerge branch 'patch/JAL-4281_idwidthandannotHeight_in_p... tree | commitdiff
2023-11-01 James ProcterMerge branch 'feature/JAL-4315_fc_draganddrop' into... tree | commitdiff
2023-11-01 James ProcterMerge branch 'patch/JAL-4317_enablefeaturewhenadjusting... tree | commitdiff
2023-11-01 James ProcterMerge branch 'develop' into patch/JAL-4281_idwidthandan... tree | commitdiff
2023-11-01 James ProcterMerge branch 'patch/JAL-4260_fix_up_select_via_ruler_in... tree | commitdiff
2023-11-01 James ProcterJAL-4260 encapsulate logic for resolving nearest column... patch/JAL-4260_fix_up_select_via_ruler_in_wrapped tree | commitdiff
2023-11-01 James ProcterJAL-4260 reinstate annotation auto-id-width for wrapped... tree | commitdiff
2023-10-31 James ProcterJAL-4260 fix up click/drags on ruler area in wrapped... tree | commitdiff
2023-10-31 James ProcterJAL-4260 right align the annotation labels regardless... tree | commitdiff
2023-10-31 James ProcterJAL-244 noticed NPE exception was possible when visibil... tree | commitdiff
2023-10-31 James ProcterJAL-244 knock on - make sure alignPanel is laid out... tree | commitdiff
2023-10-30 James ProcterJAL-4317 enable display of feature when showing its... patch/JAL-4317_enablefeaturewhenadjustingstyle tree | commitdiff
2023-10-30 James ProcterHandle feature settings files loaded via drag and drop... feature/JAL-4315_fc_draganddrop tree | commitdiff
2023-10-30 James ProcterJAL-4315 allow feature settings to be loaded from a... tree | commitdiff
2023-10-25 Ben SoaresMerge branch 'develop' into bug/JAL-4289_group_boundary... bug/JAL-4289_group_boundary_not_drawn_properly_in_fastpaint_or_paint tree | commitdiff
2023-10-23 James ProcterJAL-4311 fix ranking so models with like scores are... improvement/JAL-4124_dont_duplacate_PAE_data_acrossviews tree | commitdiff
2023-10-23 James ProcterJAL-4311 failing test case for 3d-beacons epas1_human... tree | commitdiff
2023-10-23 James ProcterJAL-4310 let the user know when model pages are not... tree | commitdiff
2023-10-23 James ProcterMerge branch 'feature/JAL-4307_hetatm_showhide' into... tree | commitdiff
2023-10-23 James ProcterJAL-4090 defensive check for featureSettings redraws... improvement/JAL-4308_smalleridtooltip tree | commitdiff
2023-10-22 James ProcterJAL-1551 errant tab and import tree | commitdiff
2023-10-22 James ProcterMerge branch 'patch/JAL-4298_synchronize_consoledoc... tree | commitdiff
2023-10-21 James ProcterJAL-1332 JAL-4298 JAL-3772 rejig the quit handler so... jims/bug/JAL-4298_java_console_causing_hang_at_startup tree | commitdiff
2023-10-20 James ProcterMerge branch 'improvement/JAL-3783_upgrade_to_groovy... tree | commitdiff
2023-10-20 Ben SoaresJAL-4298 Remove a stray return in the processGroovyScri... tree | commitdiff
2023-10-20 James ProcterJAL-4298 reuse existing log level preference method tree | commitdiff
2023-10-20 James ProcterJAL-4307 also report molecule name in tooltip for show... feature/JAL-4307_hetatm_showhide tree | commitdiff
2023-10-20 Ben SoaresJAL-4298 another implicated line bug/JAL-4298_java_console_causing_hang_at_startup tree | commitdiff
2023-10-20 James ProcterMerge branch 'feature/JAL-4307_hetatm_showhide' into... tree | commitdiff
2023-10-20 James ProcterJAL-4298 try much harder to avoid modifying console... patch/JAL-4298_synchronize_consoledoc tree | commitdiff
2023-10-19 Ben SoaresMerge branch 'patch/JAL-4298_synchronize_consoledoc... tree | commitdiff
2023-10-19 Ben SoaresJAL-4298 comment markers tree | commitdiff
2023-10-19 Ben SoaresMerge branch 'improvement/JAL-3783_upgrade_to_groovy... tree | commitdiff
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