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JAL-4001 Check --nousagestats before doing analytics in headless mode
[jalview.git]
/
src
/
jalview
/
gui
/
2023-02-22
James Procter
JAL-4095 magic fill behaviour is PAE specific
tree
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commitdiff
2023-02-22
Ben Soares
Merge branch 'develop' into features/r2_11_2_alphafold...
tree
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commitdiff
2023-02-22
James Procter
JAL-4027 JAL-3858 rename CUSTOM_RENDERER to CONTACT_MAT...
tree
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commitdiff
2023-02-20
Ben Soares
JAL-4128 Catch RasterFormatException caused whilst...
bug/JAL-4128_resizing_overview_with_solid_drags_causes_exception
tree
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commitdiff
2023-02-20
Ben Soares
Merge branch 'develop' into bug/JAL-4125_flatlaf_quitha...
bug/JAL-4125_flatlaf_quithandler_warning_doesnt_display_properly
tree
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commitdiff
2023-02-16
James Procter
Merge branch 'features/r2_11_2_alphafold/JAL-629' into...
tree
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commitdiff
2023-02-13
Ben Soares
Merge branch 'merge/JAL-1988_JAL-3772+JAL-3416+JAL...
tree
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commitdiff
2023-02-13
Ben Soares
JAL-4125 Move confirmation of closing external viewer...
tree
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commitdiff
2023-02-13
James Procter
Merge branch 'develop' into feature/JAL-1713_overviewIn...
tree
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commitdiff
2023-02-09
Ben Soares
JAL-4125 Additions to JvOptionPane and QuitHandler...
tree
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commitdiff
2023-02-03
Ben Soares
JAL-629 Fasta sequence id reading whitespace fix. Flexi...
tree
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commitdiff
2023-02-03
James Procter
JAL-1551 remove temp file in src
tree
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commitdiff
2023-02-03
James Procter
Merge branch 'develop' into features/r2_11_2_alphafold...
tree
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commitdiff
2023-01-31
James Procter
JAL-1713 update from Jalview 2.11.3 develop
tree
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commitdiff
2023-01-30
Ben Soares
JAL-1988 Make sensible choices if only the opening...
merge/JAL-1988_JAL-3772+JAL-3416+JAL-4054+JAL-4064
tree
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commitdiff
2023-01-24
James Procter
Merge branch 'merge/JAL-1988_JAL-3772+JAL-3416+JAL...
tree
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commitdiff
2023-01-24
James Procter
JAL-629 hacked in --tempfac-shading - hardcoded to...
tree
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commitdiff
2023-01-24
James Procter
Merge branch 'features/r2_11_2_alphafold/JAL-2349_JAL...
tree
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commitdiff
2023-01-24
James Procter
Merge branch 'develop' (JAL-4102 2.11.2.6 patch release...
features/r2_11_2_alphafold/JAL-2349_JAL-3855
tree
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commitdiff
2023-01-23
Ben Soares
JAL-629 Attempts to add PAE to structure. --headless...
tree
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commitdiff
2023-01-20
Jim Procter
JAL-4114 model_page_url not required in v2.0 response
patch/JAL-4114_updated_3dbeacons_api
tree
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commitdiff
2023-01-20
Jim Procter
JAL-4114 only rank model qualities that are computed...
tree
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commitdiff
2023-01-20
Jim Procter
JAL-4114 alphafold now marked as AB-INITIO so adjust...
tree
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commitdiff
2023-01-20
Jim Procter
JAL-4114 additional warnings when PDBe doesn’t return...
tree
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commitdiff
2023-01-17
Ben Soares
JAL-3416 No longer needed
tree
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commitdiff
2023-01-16
Ben Soares
JAL-3416 More tweaking of FlatLaf. Problem with macOS...
tree
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commitdiff
2023-01-06
Ben Soares
JAL-3416 remove a missed panel titlebar icon in TreePanel
tree
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commitdiff
2022-12-15
Ben Soares
JAL-629 move SubId to more logical place. Attempt remov...
tree
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commitdiff
2022-12-14
Ben Soares
JAL-629 Open Structure Viewer from cmdline
tree
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commitdiff
2022-12-08
Ben Soares
JAL-629 fix opening files
tree
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commitdiff
2022-11-23
Ben Soares
JAL-629 Doing things with the command line arguments
tree
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commitdiff
2022-11-16
Ben Soares
Merge branch 'improvement/JAL-3416_default_to_LIVE_DRAG...
tree
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commitdiff
2022-11-16
Ben Soares
JAL-3416 make flatlaf default for linux
improvement/JAL-3416_default_to_LIVE_DRAG_MODE_for_flatlaf
tree
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commitdiff
2022-11-09
Ben Soares
JAL-3416 Add necessary logo to non-internal Frames
tree
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commitdiff
2022-11-09
Ben Soares
Merge branch 'improvement/JAL-3416_default_to_LIVE_DRAG...
tree
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commitdiff
2022-11-09
Ben Soares
JAL-3416 Add necessary logo to non-internal Frames
tree
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commitdiff
2022-11-09
Ben Soares
Merge branch 'improvement/JAL-3416_default_to_LIVE_DRAG...
tree
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commitdiff
2022-11-09
Ben Soares
JAL-3416 Remove all JFrame/JInternalFrame icons (set...
tree
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commitdiff
2022-11-09
Ben Soares
Merge branch 'bug/JAL-1988_JAL-3772_improved_quit_handl...
tree
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commitdiff
2022-11-09
Ben Soares
JAL-1988 JAL-3772 Test for FORCE_QUIT whilst saving...
bug/JAL-1988_JAL-3772_improved_quit_handling
tree
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commitdiff
2022-11-08
Ben Soares
Merge branch 'bug/JAL-1988_JAL-3772_improved_quit_handl...
tree
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commitdiff
2022-11-08
Ben Soares
JAL-1988 JAL-3776 Formatting JvOptionPane
tree
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commitdiff
2022-11-08
Ben Soares
JAL-1988 JAL-3772 Fixes highlighted by tests
tree
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commitdiff
2022-11-04
Ben Soares
JAL-3416 Added logoIcon to quit (and potentially other...
tree
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commitdiff
2022-11-04
Ben Soares
JAL-1998 JAL-3772 JAL-3416 Merge conflict resolution...
tree
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commitdiff
2022-11-03
Ben Soares
JAL-3416 File Chooser iconified, JvOptionPanes iconifie...
tree
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commitdiff
2022-11-03
Jim Procter
JAL-3855 JAL-4095 simple picking of ranges adjacent...
tree
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commitdiff
2022-11-03
Ben Soares
JAL-1988 JAL-3772 Allow other window closing dialogs...
tree
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commitdiff
2022-11-03
Ben Soares
JAL-3416 More JInternalFrame icons
tree
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commitdiff
2022-11-03
Ben Soares
JAL-1988 JAL-3772 Tidying of unspecified Callable decla...
tree
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commitdiff
2022-11-03
Ben Soares
JAL-3416 Start to add JInternalFrame icons (to replace...
tree
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commitdiff
2022-11-02
Ben Soares
JAL-1988 JAL-3772 Moving packages to somewhere more...
tree
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commitdiff
2022-11-01
Ben Soares
JAL-3416 set flatlaf default drag mode to LIVE_DRAG_MODE
tree
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commitdiff
2022-10-30
Jim Procter
JAL-2349 JAL-3855 bizarre resizing exception when resiz...
tree
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commitdiff
2022-10-30
Jim Procter
JAL-4091 lines to associate rows sharing same sequence...
tree
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commitdiff
2022-10-29
Jim Procter
JAL-4094 shift+click drag up/down to resize all annotat...
tree
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commitdiff
2022-10-29
Jim Procter
JAL-4091 - noodling about including the names for seque...
tree
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commitdiff
2022-10-29
Jim Procter
Merge branch 'features/JAL-4061_and_JAL-4062_findselect...
tree
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commitdiff
2022-10-28
Ben Soares
JAL-1988 JAL-3772 Removed 'Wait' button from waitDialog...
tree
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commitdiff
2022-10-27
Ben Soares
JAL-1988 Allow generic Container object in JvOptionPane...
tree
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commitdiff
2022-10-26
Jim Procter
JAL-4086 quick and dirty mouseovers on ruler highlighti...
tree
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commitdiff
2022-10-24
Ben Soares
JAL-1988 JAL-3772 wait timer working first time but...
tree
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commitdiff
2022-10-24
Ben Soares
JAL-1988 JAL-3772 Non-blocking modal dialogs for unsave...
tree
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commitdiff
2022-10-22
Jim Procter
JAL-2349 JAL-3855 highlight residues associated with...
tree
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commitdiff
2022-10-21
Jim Procter
JAL-2349 JAL-3855 fix failing tests
tree
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commitdiff
2022-10-20
Jim Procter
JAL-2349 JAL-3855 ContactListI.getPosition() to recover...
tree
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commitdiff
2022-10-20
Jim Procter
JAL-2349 JAL-3855 experimenting with filtering columns...
tree
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commitdiff
2022-10-20
Jim Procter
JAL-3855 JAL-2349 AlignmentI.getContactList takes care...
tree
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commitdiff
2022-10-20
Jim Procter
JAL-4033 fix drag selections and distinguish row/column...
tree
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commitdiff
2022-10-20
Jim Procter
JAL-2349 (still buggy) interactive selection - time...
tree
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commitdiff
2022-10-20
Jim Procter
JAL-2349 tooltip reports value from contact range
tree
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commitdiff
2022-10-20
Jim Procter
JAL-2349 debugged click/drag and added yellow rubber...
tree
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commitdiff
2022-10-20
Jim Procter
JAL-2349 JAL-3855 - interactive point-wise row/column...
tree
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commitdiff
2022-10-19
Jim Procter
JAL-2349 JAL-4033 refactored contact matrix geom calc...
tree
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commitdiff
2022-10-14
Jim Procter
Merge branch 'features/JAL-3895_alphafoldcolours' into...
tree
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commitdiff
2022-09-26
Ben Soares
JAL-1988 JAL-3772 linked undostack to saved changes...
tree
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commitdiff
2022-09-23
Ben Soares
JAL-1988 JAL-3772 Quit confirmation dialog boxes with...
tree
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commitdiff
2022-09-16
Jim Procter
JAL-4062 copy highlighted region docs, new Alignment...
tree
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commitdiff
2022-09-15
Jim Procter
JAL-4061 use alignment panel’s feature renderer to...
tree
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commitdiff
2022-09-15
Jim Procter
JAL-4062 avc operation and model method for copying...
tree
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commitdiff
2022-09-14
Jim Procter
JAL-4061 JAL-4062 button in Find dialog to copy highlig...
tree
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commitdiff
2022-09-14
Jim Procter
JAL-4061 JAL-4062 Find can now search features
tree
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commitdiff
2022-08-08
Jim Procter
JAL-4046 JAL-3993 imports reformatting
tree
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commitdiff
2022-08-08
Jim Procter
JAL-4046 JAL-3993 patch for 2.11.2.4 release
tree
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commitdiff
2022-08-08
Jim Procter
Merge branch 'task/JAL-3991_check_actual_JAVA_VERSION_a...
tree
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commitdiff
2022-08-08
Jim Procter
JAL-4034 show the loading spinner when switching betwee...
tree
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commitdiff
2022-08-08
Jim Procter
Merge branch 'features/JAL-4034_improve_3dbeacons_butto...
tree
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commitdiff
2022-07-20
Jim Procter
JAL-4045 - don't apply distribution dependent scale...
tree
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commitdiff
2022-07-15
Ben Soares
JAL-4034 Use the new non-modal JDialog for 3DBeacons...
tree
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commitdiff
2022-07-15
Ben Soares
JAL-4034 Allow request for non-modal JDialog, which...
tree
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commitdiff
2022-07-12
Ben Soares
JAL-4034 change to jalview property name
tree
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commitdiff
2022-07-12
Ben Soares
JAL-4034 showConfirmDialog works for both desktop and...
tree
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commitdiff
2022-07-11
Ben Soares
JAL-4034 Non-blocking 3D Beacons query after warning...
tree
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commitdiff
2022-07-11
Ben Soares
JAL-4034 allow a jalview_property to set the threshold...
tree
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commitdiff
2022-07-04
Jim Procter
JAL-4034 fix #3 change uniprot ref fetch dialog to...
tree
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commitdiff
2022-07-04
Jim Procter
JAL-4034 Fix #2 show an icon and a button to press...
tree
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commitdiff
2022-06-13
Ben Soares
JAL-1988 Moved APQHandlers to jalview.jbgui and called...
tree
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commitdiff
2022-06-13
Jim Procter
Merge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS...
tree
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commitdiff
2022-06-13
Ben Soares
JAL-1988 JAL-3416 Using the flatlaf-extras About, Prefe...
tree
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commitdiff
2022-06-10
Jim Procter
JAL-2349 JAL-4027 JAL-3855 quick hack to add contact...
tree
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commitdiff
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