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JAL-2106 removed setSourceDBRef, refactor getSourceDBRef to getPrimaryDBRefs
[jalview.git] / src / jalview / gui /
2016-08-24 Jim ProcterJAL-2106 removed setSourceDBRef, refactor getSourceDBRe... tree | commitdiff
2016-08-05 gmungocJAL-2168 skip news feed if parameter "-nonews" is supplied tree | commitdiff
2016-08-05 gmungocJAL-1448 always use UK locale for formatted date properties tree | commitdiff
2016-08-04 gmungocJAL-2008 handle fast mouse drag of feature ordering... tree | commitdiff
2016-08-04 gmungocJAL-2015 convert Color from colour picker to FeatureColour tree | commitdiff
2016-08-02 Jim ProcterJAL-2034 show greyed out image during overview update tree | commitdiff
2016-08-02 Jim ProcterMerge branch 'develop' into efficiency/JAL-2034_JAL... tree | commitdiff
2016-08-01 Jim ProcterMerge branch 'bug/JAL-2154projectMappings' into develop tree | commitdiff
2016-08-01 Jim ProcterJAL-1772 make sure we actually return reference to... tree | commitdiff
2016-07-29 Jim ProcterJAL-2164 JAL-1772 explodeViews can be static, so make... tree | commitdiff
2016-07-29 Jim ProcterJAL-2154 disable visual delay only after completed... tree | commitdiff
2016-07-29 Jim ProcterJAL-2154 register any new dataset codon frames only... tree | commitdiff
2016-07-29 Jim ProcterJAL-2154 only include mappings in dbref/alcodon in... tree | commitdiff
2016-07-27 Jim ProcterJAL-2154 toString for forward references tree | commitdiff
2016-07-27 Jim ProcterJAL-2163 set title for the alignframe from restored... patch/JAL-2156_JAL-2163_saveSplitFrameFromSaveAs_restoreTitles tree | commitdiff
2016-07-27 Jim ProcterJAL-2156 resolve and add complementary views for saveAl... tree | commitdiff
2016-07-27 Jim ProcterJAL-2156 refactor saveState & saveAlignment to common... tree | commitdiff
2016-07-27 Jim ProcterJAL-2156 getter for AlignFrame(s) held in a splitframe tree | commitdiff
2016-07-24 Jim ProcterJAL-2154 formatting tree | commitdiff
2016-07-24 Jim ProcterJAL-2154 keep track of incomplete sequences and report... tree | commitdiff
2016-07-24 Jim ProcterJAL-2154 systematic pattern for defining/resolving... tree | commitdiff
2016-07-23 Jim ProcterJAL-2154 patch the hack (Jalview2XML tests pass) tree | commitdiff
2016-07-20 gmungocJAL-2154 poke JSeq start/end into Vamsas sequence tree | commitdiff
2016-07-20 gmungocJAL-2023 avoid writing / loading empty mappings tree | commitdiff
2016-07-19 Jim ProcterMerge branch 'develop' into efficiency/JAL-2034_JAL... tree | commitdiff
2016-07-18 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-07-18 gmungocJAL-2099 JAL-2100 port scale number / hidden column... tree | commitdiff
2016-07-18 Jim ProcterMerge branch 'features/JAL-2068groovyAnnotationWorker... tree | commitdiff
2016-07-18 Jim ProcterJAL-2145 JAL-1551 formatting tree | commitdiff
2016-07-18 Jim ProcterJAL-2145 fix: build alignments before building AlignFra... tree | commitdiff
2016-07-12 Jim ProcterJAL-2144 TODO - new methods for canonicalisation and... tree | commitdiff
2016-07-12 Jim ProcterJAL-2110 avoid potential race condition where user... tree | commitdiff
2016-07-12 Jim ProcterJAL-2110 TODO for JAL-2131 tree | commitdiff
2016-07-06 gmungocJAL-2110 cross-refs from protein to show cds not non... tree | commitdiff
2016-07-04 gmungocJAL-2110 use shared dataset when copying alignment... tree | commitdiff
2016-07-04 gmungocRevert "JAL-2110 use shared alignment dataset when... tree | commitdiff
2016-07-04 gmungocJAL-2110 use shared alignment dataset when copying... tree | commitdiff
2016-07-01 gmungocJAL-2110 bug fixing and tidying for get cross-refs tree | commitdiff
2016-07-01 gmungocJAL-2110 set reasonable bounds to initial split of... tree | commitdiff
2016-07-01 gmungocJAL-2110 add 'products' parameter to filter results... tree | commitdiff
2016-06-30 gmungocMerge branch 'develop' into features/JAL-2110_crossRefD... tree | commitdiff
2016-06-30 tcofoegbuJAL-2074 Improvement to StructureChooser and FTS interf... tree | commitdiff
2016-06-29 gmungocMerge branch 'develop' into features/JAL-2110_crossRefD... tree | commitdiff
2016-06-29 gmungocJAL-1369 fix bug reloading a project with group sequenc... tree | commitdiff
2016-06-27 gmungoctidied loop with generic iteration / loop variable tree | commitdiff
2016-06-27 gmungocJAL-2133 refactored duplicated code to AlignmentViewport tree | commitdiff
2016-06-24 tcofoegbuJAL-1960 updated unit test to include the test case... tree | commitdiff
2016-06-23 Jim ProcterMerge branch 'develop' into merge_JAL-2110 tree | commitdiff
2016-06-22 gmungocJAL-1982 defensive test for null array of annotations tree | commitdiff
2016-06-22 Jim ProcterJAL-2110 remove hardwired detection of search context... tree | commitdiff
2016-06-21 Jim ProcterMerge branch 'features/JAL-2110_crossRefDuplications... tree | commitdiff
2016-06-21 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... tree | commitdiff
2016-06-21 gmungocJAL-2074 suppress prompt to save closed Groovy script... tree | commitdiff
2016-06-21 Jim ProcterMerge branch 'features/JAL-1956_featureStyles' into... tree | commitdiff
2016-06-21 gmungocJAL-2074 reuse Groovy window when reopening; rebind... tree | commitdiff
2016-06-21 Jim ProcterJAL-1369 mark reference sequence & view state and resto... tree | commitdiff
2016-06-21 Jim ProcterJAL-1369 project XML efficiency TODO tree | commitdiff
2016-06-21 Jim ProcterJAL-1369 dead code TODO? tree | commitdiff
2016-06-21 Jim ProcterJAL-1369 ensure *real* alignment’s metadata written... tree | commitdiff
2016-06-20 Jim ProcterJAL-1551 tidy tree | commitdiff
2016-06-20 Jim ProcterJAL-2065 don’t pass stale group reference tree | commitdiff
2016-06-20 Jim ProcterJAL-2068 avoid ArrayIndexOutOfBounds when consensus... tree | commitdiff
2016-06-20 Jim ProcterJAL-2065 check position lies within group before gettin... tree | commitdiff
2016-06-20 Jim ProcterMerge branch 'develop' into features/JAL-2068groovyAnno... features/JAL-2068groovyAnnotationWorker tree | commitdiff
2016-06-20 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-06-20 tcofoegbuJAL-1823 Deleted two obsolete methods in PopupMenu... tree | commitdiff
2016-06-20 Jim ProcterMerge branch 'develop' into features/JAL-1812_JAL-2083_... features/JAL-1812_JAL-2083_groovyBinding tree | commitdiff
2016-06-19 Jim ProcterJAL-2110 JAL-2131 JAL-1765 remove reference to jalview... tree | commitdiff
2016-06-16 gmungocJAL-1993 close sequence fetcher when opening database... tree | commitdiff
2016-06-16 gmungocJAL-1993 hide sequence fetcher dialogue until database... tree | commitdiff
2016-06-15 Jim ProcterMerge branch 'develop' into features/JAL-2110_crossRefD... tree | commitdiff
2016-06-15 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-06-15 tcofoegbuJAL-2002 disabled 'Best Uniport Coverage' filter. JAL... tree | commitdiff
2016-06-15 gmungocJAL-2025 unit tests added tree | commitdiff
2016-06-14 gmungocMerge branch 'develop' into features/JAL-2110_crossRefD... tree | commitdiff
2016-06-14 gmungocJAL-2110 fixes to dbref resolution and mappings, use... tree | commitdiff
2016-06-14 tcofoegbuJAL-2047 resolved structure chooser's displayed column... tree | commitdiff
2016-06-09 gmungocJAL-2110 work in progress tree | commitdiff
2016-06-09 gmungocMerge branch 'develop' into features/JAL-2110_makeSense... tree | commitdiff
2016-06-08 tcofoegbuJAL-1479 JAL- Fix to eradicate duplicate mapping output... tree | commitdiff
2016-06-06 tcofoegbuJAL-1919, JAL-1960 fix to disable refetching dbrefs... tree | commitdiff
2016-06-06 tcofoegbuJAL-1944 bugfix for wrong alignment numbering when... tree | commitdiff
2016-06-03 gmungocJAL-2110 random stuff tree | commitdiff
2016-06-02 gmungocMerge branch 'develop' into features/JAL-2110_makeSense... tree | commitdiff
2016-06-02 gmungocJAL-1424 corrected typos in message text keys tree | commitdiff
2016-06-01 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-06-01 tcofoegbuJAL-1944 updated bugfix implementation tree | commitdiff
2016-06-01 gmungocJAL-1424 utility to check resource bundle labels used... tree | commitdiff
2016-05-31 tcofoegbumerge tree | commitdiff
2016-05-31 tcofoegbuJAL-1944 fix for visible seqs sometimes been replaced... tree | commitdiff
2016-05-31 gmungocJAL-2023 adjustments to mappings added for split frame... tree | commitdiff
2016-05-31 Jim ProcterMerge branch 'jims/291patches' into develop tree | commitdiff
2016-05-31 gmungocJAL-1011 JAL-1989 don't mirror column-only selections... tree | commitdiff
2016-05-30 Jim ProcterJAL-553 JAL-1557 always send selections after triggerin... tree | commitdiff
2016-05-30 Jim ProcterJAL-1557 allow group associated rows to be used to... tree | commitdiff
2016-05-30 Jim ProcterJAL-2077 fix: convenience method and checks for CMD... tree | commitdiff
2016-05-30 Jim ProcterMerge branch 'develop' into efficiency/JAL-2034_JAL... tree | commitdiff
2016-05-30 Jim ProcterJAL-1552 fix JAL-2122 resolve File->string before addin... tree | commitdiff
2016-05-27 gmungocJAL-1989 tightened up use of flag for 'column selection... tree | commitdiff
2016-05-27 gmungocJAL-1911 use existing object when setting 'Prompt each... tree | commitdiff
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