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separation of jmol script command generation from jmol binding
[jalview.git]
/
src
/
jalview
/
gui
/
2007-05-22
jprocter
refactored document objects and bugfix on jvdataset...
tree
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commitdiff
2007-05-22
amwaterhouse
DONT SET PICKING LABEL
tree
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commitdiff
2007-05-18
jprocter
update to and from document (and remove deprecated...
tree
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commitdiff
2007-05-18
jprocter
removed uneccessary vamsasLoad commented out.
tree
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commitdiff
2007-05-17
jprocter
refining - still debugging.
tree
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commitdiff
2007-05-17
jprocter
use of proper vamsas client API by Jalview
tree
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commitdiff
2007-05-17
jprocter
modified castor-1.1 library and refactored uk.ac.vamsas
tree
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commitdiff
2007-05-15
amwaterhouse
SequenceListener highlights SearchResults, not just...
tree
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commitdiff
2007-05-10
jprocter
documentation
tree
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commitdiff
2007-05-10
amwaterhouse
visibility setting
tree
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commitdiff
2007-05-10
amwaterhouse
Keep record of last tooltip
tree
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commitdiff
2007-05-10
amwaterhouse
Visible state of annotation
tree
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commitdiff
2007-05-10
amwaterhouse
Add show all hidden menu
tree
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commitdiff
2007-05-10
amwaterhouse
Dont duplicate annotations in multiple views
tree
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commitdiff
2007-05-09
amwaterhouse
minor formatting of tooltip
tree
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commitdiff
2007-05-08
amwaterhouse
check for null annotations
tree
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commitdiff
2007-05-08
amwaterhouse
set picking label
tree
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commitdiff
2007-05-08
amwaterhouse
instant update when seq colour is pressed
tree
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commitdiff
2007-05-08
amwaterhouse
must specify .CA
tree
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commitdiff
2007-05-08
amwaterhouse
small sphere for alpha carbon
tree
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commitdiff
2007-05-07
amwaterhouse
Image size must allow for scale height
tree
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commitdiff
2007-05-07
amwaterhouse
dif is never used
tree
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commitdiff
2007-05-07
amwaterhouse
Allow for large font sizes
tree
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commitdiff
2007-05-07
amwaterhouse
dont use gold highlights
tree
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commitdiff
2007-05-07
amwaterhouse
Max width for tooltip
tree
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commitdiff
2007-05-07
amwaterhouse
still trying to prevent null painting
tree
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commitdiff
2007-05-07
amwaterhouse
Use id hash to add pdb mappings back to alignment
tree
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commitdiff
2007-05-07
amwaterhouse
PDBViewer available if necessary
tree
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commitdiff
2007-05-04
amwaterhouse
Check bounds of loaded comp
tree
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commitdiff
2007-05-04
amwaterhouse
remove system.out
tree
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commitdiff
2007-05-04
amwaterhouse
added
tree
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commitdiff
2007-05-04
amwaterhouse
Add dbrefs before zero length features
tree
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commitdiff
2007-05-04
amwaterhouse
Rename AppJMol to AppJmol - also AppJmol works with...
tree
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commitdiff
2007-05-04
amwaterhouse
Renamed to AppJmol
tree
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commitdiff
2007-05-04
amwaterhouse
New example file for version 2.3
tree
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commitdiff
2007-05-04
amwaterhouse
Splash screen is not added using normal method, prevent...
tree
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commitdiff
2007-05-03
amwaterhouse
pdb id toUpperCase
tree
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commitdiff
2007-05-03
amwaterhouse
optimize repaints
tree
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commitdiff
2007-05-03
amwaterhouse
remove system.out
tree
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commitdiff
2007-05-02
amwaterhouse
Allow expansion of textarea for many sequence input
tree
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commitdiff
2007-05-02
amwaterhouse
convert space to gapchar
tree
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commitdiff
2007-05-02
jprocter
undo stackempty error fix, refactored do and undo(...
tree
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commitdiff
2007-05-02
jprocter
refactored do and undo() method to take array of alignm...
tree
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commitdiff
2007-05-02
jprocter
copy only the sequence associated alignment annotation...
tree
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commitdiff
2007-05-01
amwaterhouse
Multiple views/hidden region/undo out of index bug
tree
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commitdiff
2007-05-01
amwaterhouse
Can specify PDB chain to map sequence to - only used...
tree
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commitdiff
2007-05-01
jprocter
sort-by-score works of sequence-annotation, not alignme...
tree
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commitdiff
2007-05-01
amwaterhouse
Save seqset properties
tree
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commitdiff
2007-04-30
jprocter
fixed deadlock
tree
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commitdiff
2007-04-30
jprocter
rebuild sort by scores menu when new annotation is...
tree
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commitdiff
2007-04-27
amwaterhouse
remove excessive painting
tree
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commitdiff
2007-04-27
amwaterhouse
Check pdbid size >0
tree
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commitdiff
2007-04-27
amwaterhouse
Move repaint in thread
tree
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commitdiff
2007-04-27
amwaterhouse
Put alignmentProperties in scrollpane
tree
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commitdiff
2007-04-27
amwaterhouse
Check feature group is visible for mouse over features
tree
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commitdiff
2007-04-27
amwaterhouse
remove System.out
tree
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commitdiff
2007-04-27
jprocter
newlines in alignment properties converted to <br>
tree
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commitdiff
2007-04-27
amwaterhouse
hide the initial window after selection made
tree
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commitdiff
2007-04-27
amwaterhouse
Annotation gradient will use direct colours if no graph...
tree
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commitdiff
2007-04-27
amwaterhouse
hide annotation colouring options
tree
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commitdiff
2007-04-27
amwaterhouse
Dont colour labels
tree
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commitdiff
2007-04-26
jprocter
added/tested sort by scores menu and added basic extrac...
tree
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commitdiff
2007-04-26
jprocter
use hasScore method to test presence of score in annota...
tree
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commitdiff
2007-04-26
amwaterhouse
check for null ss character
tree
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commitdiff
2007-04-26
amwaterhouse
Edit seqs
tree
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commitdiff
2007-04-26
jprocter
groovy support without compile-time dependency.
tree
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commitdiff
2007-04-25
jprocter
getContentPane().add alignmentProperties popup.
tree
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commitdiff
2007-04-25
amwaterhouse
Show scores
tree
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commitdiff
2007-04-25
amwaterhouse
Export annotations with properties
tree
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commitdiff
2007-04-25
amwaterhouse
View Properties
tree
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commitdiff
2007-04-25
jprocter
AlignmentAnnotation: added annotation score attribute...
tree
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commitdiff
2007-04-23
jprocter
functions that operate on references to sequences in...
tree
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commitdiff
2007-04-23
jprocter
distinct methods for getting references to selected...
tree
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commitdiff
2007-04-23
amwaterhouse
Dbref fetcher takes sequences, not alignment
tree
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commitdiff
2007-04-23
amwaterhouse
Test out new arrangement
tree
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commitdiff
2007-04-23
amwaterhouse
Get colour from structure added
tree
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commitdiff
2007-04-23
amwaterhouse
check dispalyChar is not null
tree
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commitdiff
2007-04-20
jprocter
global dbref fetch option in web services menu.
tree
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commitdiff
2007-04-19
jprocter
fixed column selection cut/paste and self paste.
tree
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commitdiff
2007-04-19
amwaterhouse
Only setDropTarget if Desktop is not null
tree
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commitdiff
2007-04-18
amwaterhouse
hastext = false
tree
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commitdiff
2007-04-18
amwaterhouse
featureGroups not null
tree
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commitdiff
2007-04-18
amwaterhouse
Quality does not have text
tree
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commitdiff
2007-04-18
amwaterhouse
Alignment of labels and text
tree
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commitdiff
2007-04-18
amwaterhouse
checks for scrollbar height
tree
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commitdiff
2007-04-18
amwaterhouse
Disable memory checker for now
tree
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commitdiff
2007-04-17
jprocter
paste adds or creates full copies of objects in clipboa...
tree
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commitdiff
2007-04-17
jprocter
pdb files are global to all alignments with new mapping...
tree
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commitdiff
2007-04-16
amwaterhouse
drawSequence must be synchronized
tree
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commitdiff
2007-04-16
amwaterhouse
Too many calls to paintAlignment
tree
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commitdiff
2007-04-13
amwaterhouse
FeatureRenderer takes alignmentPanel
tree
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commitdiff
2007-04-12
amwaterhouse
Number pad keys can be used in cursor mode
tree
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commitdiff
2007-04-11
jprocter
fixed for display of 'null' group features
tree
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commitdiff
2007-04-11
amwaterhouse
Can add features with no group
tree
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commitdiff
2007-04-11
amwaterhouse
Adjustment for hidden columns
tree
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commitdiff
2007-04-11
amwaterhouse
Use same mouse events as scalePanel
tree
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commitdiff
2007-04-05
amwaterhouse
Paste menu item dispalyed on right click. Memory settin...
tree
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commitdiff
2007-04-04
amwaterhouse
newFEatures flag for seq type
tree
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commitdiff
2007-04-04
amwaterhouse
Use newFeatures flag
tree
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commitdiff
2007-04-04
amwaterhouse
combobox for overlapping features
tree
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commitdiff
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