bugfix for writing fasta file without gap characters.
[jalview.git] / src / jalview / gui /
2005-01-15 jprocterImplemented clustal alignment via jemboss.
2005-01-14 amwaterhouseSpaces
2005-01-14 amwaterhouseVarious color bugs sorted out
2005-01-13 amwaterhousegetValue method added
2005-01-13 amwaterhouseMaintain PID or conservation status when changing colour
2005-01-13 amwaterhouseSequenceGroup is now an array
2005-01-13 amwaterhouseSend array of groups to renderer
2005-01-13 amwaterhouseInitial selection bug fixed
2005-01-13 amwaterhouseGetResidueBoxColour altered for faster rendering
2005-01-13 amwaterhouseRenderer already has graphics context
2005-01-13 amwaterhousegetResidueBoxColour has been removed for faster rendering
2005-01-13 amwaterhouseIgnores gaps when searching
2005-01-12 amwaterhouseGroup editing is done by control and alt key down
2005-01-12 amwaterhouseregular expression added
2005-01-12 amwaterhousedelete gaps bug fixed
2005-01-10 amwaterhouseDisplays number of matches found in search
2004-12-17 amwaterhousejalview URL updated and authors in about file
2004-12-17 amwaterhouseMac osX doesnt like isControlDown, use alt instead
2004-12-17 amwaterhouseAll optionpane messages must be added to Desktop.desktop
2004-12-17 amwaterhouseIf screensize is small, setSize to be the screenSize
2004-12-17 amwaterhouseDoesn't draw the white box at the end of a line
2004-12-17 amwaterhouseFixed bug in editing by group
2004-12-17 amwaterhouseHide apply and undo buttons
2004-12-17 amwaterhouseUse the isGap method in utils
2004-12-16 amwaterhouseOutput new alignment bug fixed
2004-12-16 amwaterhouseRemove redundancy implemented
2004-12-15 amwaterhouseNew class
2004-12-15 amwaterhouseColourScheme no longer requires sequence
2004-12-15 amwaterhouseEnd of GroupEditing, GroupDefiningMode!!!!!
2004-12-15 amwaterhouseRegister with paintrefresher
2004-12-15 amwaterhouseIf selection altered, update RubberbandGroup
2004-12-15 amwaterhouseAll colours added, also sequence menu added
2004-12-15 amwaterhouseRight mouse brings up Popupmenu
2004-12-15 amwaterhouseColourScheme findColour no longer needs sequence
2004-12-15 amwaterhouseIf selection altered, update Rubberband group also
2004-12-15 amwaterhouseREpainting after graph panel setVisible fixed
2004-12-15 amwaterhouseSliderPanel added, edit is by mouse click
2004-12-15 amwaterhouseRemoved, SliderPanel replaces this class
2004-12-14 amwaterhouseDont try{}catch the findColour method, lets fix this now
2004-12-14 amwaterhouseAdd Jims name!
2004-12-14 amwaterhouseScalepanel has new constructor
2004-12-14 amwaterhouseIncrement panel must call globalcolour or seqeuncegroup...
2004-12-14 amwaterhouseAllow userdefined colours for groups
2004-12-14 amwaterhouseCan now select groups using column selection
2004-12-14 amwaterhouseUserdefinedcolours works for groups as well
2004-12-14 amwaterhouseNew class for defining groups and selections
2004-12-14 amwaterhouseSelection of sequences is continuous
2004-12-14 amwaterhouseDrawing of group and rubberband corrected
2004-12-14 amwaterhouseSequence selection now done via popup menu
2004-12-14 amwaterhousemust allow for alignment width
2004-12-14 amwaterhouseCopy, move and delete now done via Popup menu
2004-12-10 amwaterhouseColours set globally in viewport
2004-12-10 amwaterhouseLooks to viewportfor global settings
2004-12-10 amwaterhouseAddition of rubberband
2004-12-10 amwaterhouseNow draws group, rubberband
2004-12-10 amwaterhousesequence selection modified
2004-12-10 amwaterhouseSELECTED IDS COLOURED LIGHT GRAY
2004-12-10 amwaterhouseCOnservationSelected and rubberband method setup
2004-12-10 amwaterhouseColour scheme new global implementation
2004-12-10 amwaterhouseColour etc is now globally set
2004-12-03 amwaterhouseDont use updateResidueView
2004-12-03 amwaterhouseremove splashscreenclosing line
2004-12-03 amwaterhousePreparing for groupselect mode
2004-12-03 amwaterhouseav.charWidth is now an int
2004-12-03 amwaterhousesend SequenceGroup to renderer
2004-12-03 amwaterhousecharWidth is now an int
2004-12-03 amwaterhouseText alignment changes
2004-12-03 amwaterhouseAllow operation if no groups exist
2004-12-03 amwaterhouseColourscheme is null
2004-12-03 amwaterhouseinvalidate and validate after closing splashscreen
2004-12-03 amwaterhouseSpace added
2004-12-03 amwaterhouseAdd globalcolourscheme
2004-12-03 amwaterhouseSort groups bug fixed
2004-12-02 amwaterhouseSearch on residue position and within selection
2004-12-02 amwaterhousesplashscreen activated
2004-12-01 amwaterhouseIf search results==null, displaySearch is false
2004-12-01 amwaterhouseWhen closed, highlightSearchResults( null )
2004-12-01 amwaterhouseshow search results added
2004-12-01 amwaterhouseshowinternal***dialog
2004-12-01 amwaterhousesearch function added
2004-12-01 amwaterhouserendergaps(boolean) function added
2004-12-01 amwaterhouseshowInternalInputDialog
2004-12-01 amwaterhouseDont render gaps in overview panel
2004-12-01 amwaterhouseBrackets moved
2004-12-01 amwaterhouseFind routine added
2004-12-01 amwaterhouseChar to string comparison
2004-12-01 amwaterhouseNew function to highlight text search results
2004-12-01 amwaterhouseNew classes
2004-12-01 amwaterhouseSpace changes
2004-11-22 amwaterhouseAbout info updated
2004-11-19 amwaterhouseset display boxes must be applied to groups
2004-11-19 amwaterhouseprinting now uses printer fonts
2004-11-19 amwaterhouseif sequence is in selection when removed, remove from...
2004-11-19 amwaterhousedoesn't create an image for drawing, important for...
2004-11-19 amwaterhousechecks for new selection before adding a new group
2004-11-19 amwaterhousereturns color.white if residueBoxColour is null
2004-11-18 amwaterhousenot used at present
2004-11-18 amwaterhousesetcolour in seqpanel now needs to know about conservation
2004-11-18 amwaterhouseallow for printing
2004-11-18 amwaterhousetry out graphics 2d
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