2005-02-11 |
amwaterhouse | update start and end res when copying |
tree | commitdiff |
2005-02-11 |
amwaterhouse | add control a key to select all |
tree | commitdiff |
2005-02-11 |
amwaterhouse | bug fixed if featureEnd is beyond end of sequence |
tree | commitdiff |
2005-02-10 |
amwaterhouse | cut and paste now in main menu |
tree | commitdiff |
2005-02-10 |
amwaterhouse | trimmed down |
tree | commitdiff |
2005-02-10 |
amwaterhouse | Key listener works!! |
tree | commitdiff |
2005-02-10 |
amwaterhouse | Cut and paste implemented |
tree | commitdiff |
2005-02-10 |
amwaterhouse | check that mouse is over sequence if unaligned |
tree | commitdiff |
2005-02-10 |
amwaterhouse | edit sequence name method |
tree | commitdiff |
2005-02-10 |
amwaterhouse | remove try catch loop |
tree | commitdiff |
2005-02-10 |
amwaterhouse | isAligned method added, check before making tree |
tree | commitdiff |
2005-02-09 |
amwaterhouse | Display tooltip updated |
tree | commitdiff |
2005-02-09 |
amwaterhouse | Correct number of ids is drawn |
tree | commitdiff |
2005-02-09 |
amwaterhouse | Fixed display bugs when feature is off the screen |
tree | commitdiff |
2005-02-07 |
amwaterhouse | Use Cache.getProperty |
tree | commitdiff |
2005-02-07 |
amwaterhouse | Settooltip for sequence feature |
tree | commitdiff |
2005-02-04 |
amwaterhouse | SequenceFeature display added |
tree | commitdiff |
2005-02-02 |
amwaterhouse | Remove test image |
tree | commitdiff |
2005-02-02 |
amwaterhouse | Modified for wrappingAlignment |
tree | commitdiff |
2005-02-01 |
amwaterhouse | Apply to all groups method added |
tree | commitdiff |
2005-02-01 |
amwaterhouse | Update PID or conservationSlider if necessary |
tree | commitdiff |
2005-02-01 |
amwaterhouse | Bugs in column selection fixed |
tree | commitdiff |
2005-02-01 |
amwaterhouse | Conservation and PID colouring methods updated, also... |
tree | commitdiff |
2005-02-01 |
amwaterhouse | Conservation and PID colouring methods updated |
tree | commitdiff |
2005-01-27 |
amwaterhouse | ColourSchemeKey now in documentation |
tree | commitdiff |
2005-01-25 |
amwaterhouse | system.exit or destroy if applet or app |
tree | commitdiff |
2005-01-25 |
amwaterhouse | don't system.ext |
tree | commitdiff |
2005-01-25 |
amwaterhouse | now has key listener |
tree | commitdiff |
2005-01-25 |
amwaterhouse | clustalColour bug fixed, clear selection |
tree | commitdiff |
2005-01-24 |
amwaterhouse | creates new groups when selecting branches of the tree |
tree | commitdiff |
2005-01-24 |
amwaterhouse | now uses 1.1 friendly regex |
tree | commitdiff |
2005-01-24 |
amwaterhouse | Clear selection when deleting all groups |
tree | commitdiff |
2005-01-21 |
amwaterhouse | ForegroundColor is darker.darker.darker |
tree | commitdiff |
2005-01-21 |
amwaterhouse | if stretchGroup is null, set avRubberbandGroup new... |
tree | commitdiff |
2005-01-21 |
amwaterhouse | <= y2 is now < y2 |
tree | commitdiff |
2005-01-21 |
amwaterhouse | Commented out code removed |
tree | commitdiff |
2005-01-21 |
amwaterhouse | Fill rect white |
tree | commitdiff |
2005-01-21 |
amwaterhouse | Check if graphics is null in labelSize |
tree | commitdiff |
2005-01-21 |
amwaterhouse | False changed to true |
tree | commitdiff |
2005-01-21 |
amwaterhouse | SuperGroup added |
tree | commitdiff |
2005-01-21 |
amwaterhouse | System.out removed |
tree | commitdiff |
2005-01-21 |
amwaterhouse | SuperGroups added |
tree | commitdiff |
2005-01-17 |
amwaterhouse | Clustal align DNA spinner added |
tree | commitdiff |
2005-01-17 |
amwaterhouse | Fix overviewPanel bugs |
tree | commitdiff |
2005-01-17 |
amwaterhouse | RefreshPanels after a colour change |
tree | commitdiff |
2005-01-17 |
amwaterhouse | Dont use addToDesktop for splashscreen |
tree | commitdiff |
2005-01-17 |
amwaterhouse | SetSecondaryPanel visible |
tree | commitdiff |
2005-01-17 |
amwaterhouse | Works out exisiting colur of a group |
tree | commitdiff |
2005-01-17 |
amwaterhouse | New class |
tree | commitdiff |
2005-01-15 |
jprocter | Implemented clustal alignment via jemboss. |
tree | commitdiff |
2005-01-14 |
amwaterhouse | Spaces |
tree | commitdiff |
2005-01-14 |
amwaterhouse | Various color bugs sorted out |
tree | commitdiff |
2005-01-13 |
amwaterhouse | getValue method added |
tree | commitdiff |
2005-01-13 |
amwaterhouse | Maintain PID or conservation status when changing colour |
tree | commitdiff |
2005-01-13 |
amwaterhouse | SequenceGroup is now an array |
tree | commitdiff |
2005-01-13 |
amwaterhouse | Send array of groups to renderer |
tree | commitdiff |
2005-01-13 |
amwaterhouse | Initial selection bug fixed |
tree | commitdiff |
2005-01-13 |
amwaterhouse | GetResidueBoxColour altered for faster rendering |
tree | commitdiff |
2005-01-13 |
amwaterhouse | Renderer already has graphics context |
tree | commitdiff |
2005-01-13 |
amwaterhouse | getResidueBoxColour has been removed for faster rendering |
tree | commitdiff |
2005-01-13 |
amwaterhouse | Ignores gaps when searching |
tree | commitdiff |
2005-01-12 |
amwaterhouse | Group editing is done by control and alt key down |
tree | commitdiff |
2005-01-12 |
amwaterhouse | regular expression added |
tree | commitdiff |
2005-01-12 |
amwaterhouse | delete gaps bug fixed |
tree | commitdiff |
2005-01-10 |
amwaterhouse | Displays number of matches found in search |
tree | commitdiff |
2004-12-17 |
amwaterhouse | jalview URL updated and authors in about file |
tree | commitdiff |
2004-12-17 |
amwaterhouse | Mac osX doesnt like isControlDown, use alt instead |
tree | commitdiff |
2004-12-17 |
amwaterhouse | All optionpane messages must be added to Desktop.desktop |
tree | commitdiff |
2004-12-17 |
amwaterhouse | If screensize is small, setSize to be the screenSize |
tree | commitdiff |
2004-12-17 |
amwaterhouse | Doesn't draw the white box at the end of a line |
tree | commitdiff |
2004-12-17 |
amwaterhouse | Fixed bug in editing by group |
tree | commitdiff |
2004-12-17 |
amwaterhouse | Hide apply and undo buttons |
tree | commitdiff |
2004-12-17 |
amwaterhouse | Use the isGap method in utils |
tree | commitdiff |
2004-12-16 |
amwaterhouse | Output new alignment bug fixed |
tree | commitdiff |
2004-12-16 |
amwaterhouse | Remove redundancy implemented |
tree | commitdiff |
2004-12-15 |
amwaterhouse | New class |
tree | commitdiff |
2004-12-15 |
amwaterhouse | ColourScheme no longer requires sequence |
tree | commitdiff |
2004-12-15 |
amwaterhouse | End of GroupEditing, GroupDefiningMode!!!!! |
tree | commitdiff |
2004-12-15 |
amwaterhouse | Register with paintrefresher |
tree | commitdiff |
2004-12-15 |
amwaterhouse | If selection altered, update RubberbandGroup |
tree | commitdiff |
2004-12-15 |
amwaterhouse | All colours added, also sequence menu added |
tree | commitdiff |
2004-12-15 |
amwaterhouse | Right mouse brings up Popupmenu |
tree | commitdiff |
2004-12-15 |
amwaterhouse | ColourScheme findColour no longer needs sequence |
tree | commitdiff |
2004-12-15 |
amwaterhouse | If selection altered, update Rubberband group also |
tree | commitdiff |
2004-12-15 |
amwaterhouse | REpainting after graph panel setVisible fixed |
tree | commitdiff |
2004-12-15 |
amwaterhouse | SliderPanel added, edit is by mouse click |
tree | commitdiff |
2004-12-15 |
amwaterhouse | Removed, SliderPanel replaces this class |
tree | commitdiff |
2004-12-14 |
amwaterhouse | Dont try{}catch the findColour method, lets fix this now |
tree | commitdiff |
2004-12-14 |
amwaterhouse | Add Jims name! |
tree | commitdiff |
2004-12-14 |
amwaterhouse | Scalepanel has new constructor |
tree | commitdiff |
2004-12-14 |
amwaterhouse | Increment panel must call globalcolour or seqeuncegroup... |
tree | commitdiff |
2004-12-14 |
amwaterhouse | Allow userdefined colours for groups |
tree | commitdiff |
2004-12-14 |
amwaterhouse | Can now select groups using column selection |
tree | commitdiff |
2004-12-14 |
amwaterhouse | Userdefinedcolours works for groups as well |
tree | commitdiff |
2004-12-14 |
amwaterhouse | New class for defining groups and selections |
tree | commitdiff |
2004-12-14 |
amwaterhouse | Selection of sequences is continuous |
tree | commitdiff |
2004-12-14 |
amwaterhouse | Drawing of group and rubberband corrected |
tree | commitdiff |
2004-12-14 |
amwaterhouse | Sequence selection now done via popup menu |
tree | commitdiff |
2004-12-14 |
amwaterhouse | must allow for alignment width |
tree | commitdiff |
2004-12-14 |
amwaterhouse | Copy, move and delete now done via Popup menu |
tree | commitdiff |
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