source.jalview.org Git - jalview.git/history

git://source.jalview.org / jalview.git / history

2007-05-03	amwaterhouse	pdb id toUpperCase	tree \| commitdiff
2007-05-03	amwaterhouse	optimize repaints	tree \| commitdiff
2007-05-03	amwaterhouse	remove system.out	tree \| commitdiff
2007-05-02	amwaterhouse	Allow expansion of textarea for many sequence input	tree \| commitdiff
2007-05-02	amwaterhouse	convert space to gapchar	tree \| commitdiff
2007-05-02	jprocter	undo stackempty error fix, refactored do and undo(...	tree \| commitdiff
2007-05-02	jprocter	refactored do and undo() method to take array of alignm...	tree \| commitdiff
2007-05-02	jprocter	copy only the sequence associated alignment annotation...	tree \| commitdiff
2007-05-01	amwaterhouse	Multiple views/hidden region/undo out of index bug	tree \| commitdiff
2007-05-01	amwaterhouse	Can specify PDB chain to map sequence to - only used...	tree \| commitdiff
2007-05-01	jprocter	sort-by-score works of sequence-annotation, not alignme...	tree \| commitdiff
2007-05-01	amwaterhouse	Save seqset properties	tree \| commitdiff
2007-04-30	jprocter	fixed deadlock	tree \| commitdiff
2007-04-30	jprocter	rebuild sort by scores menu when new annotation is...	tree \| commitdiff
2007-04-27	amwaterhouse	remove excessive painting	tree \| commitdiff
2007-04-27	amwaterhouse	Check pdbid size >0	tree \| commitdiff
2007-04-27	amwaterhouse	Move repaint in thread	tree \| commitdiff
2007-04-27	amwaterhouse	Put alignmentProperties in scrollpane	tree \| commitdiff
2007-04-27	amwaterhouse	Check feature group is visible for mouse over features	tree \| commitdiff
2007-04-27	amwaterhouse	remove System.out	tree \| commitdiff
2007-04-27	jprocter	newlines in alignment properties converted to <br>	tree \| commitdiff
2007-04-27	amwaterhouse	hide the initial window after selection made	tree \| commitdiff
2007-04-27	amwaterhouse	Annotation gradient will use direct colours if no graph...	tree \| commitdiff
2007-04-27	amwaterhouse	hide annotation colouring options	tree \| commitdiff
2007-04-27	amwaterhouse	Dont colour labels	tree \| commitdiff
2007-04-26	jprocter	added/tested sort by scores menu and added basic extrac...	tree \| commitdiff
2007-04-26	jprocter	use hasScore method to test presence of score in annota...	tree \| commitdiff
2007-04-26	amwaterhouse	check for null ss character	tree \| commitdiff
2007-04-26	amwaterhouse	Edit seqs	tree \| commitdiff
2007-04-26	jprocter	groovy support without compile-time dependency.	tree \| commitdiff
2007-04-25	jprocter	getContentPane().add alignmentProperties popup.	tree \| commitdiff
2007-04-25	amwaterhouse	Show scores	tree \| commitdiff
2007-04-25	amwaterhouse	Export annotations with properties	tree \| commitdiff
2007-04-25	amwaterhouse	View Properties	tree \| commitdiff
2007-04-25	jprocter	AlignmentAnnotation: added annotation score attribute...	tree \| commitdiff
2007-04-23	jprocter	functions that operate on references to sequences in...	tree \| commitdiff
2007-04-23	jprocter	distinct methods for getting references to selected...	tree \| commitdiff
2007-04-23	amwaterhouse	Dbref fetcher takes sequences, not alignment	tree \| commitdiff
2007-04-23	amwaterhouse	Test out new arrangement	tree \| commitdiff
2007-04-23	amwaterhouse	Get colour from structure added	tree \| commitdiff
2007-04-23	amwaterhouse	check dispalyChar is not null	tree \| commitdiff
2007-04-20	jprocter	global dbref fetch option in web services menu.	tree \| commitdiff
2007-04-19	jprocter	fixed column selection cut/paste and self paste.	tree \| commitdiff
2007-04-19	amwaterhouse	Only setDropTarget if Desktop is not null	tree \| commitdiff
2007-04-18	amwaterhouse	hastext = false	tree \| commitdiff
2007-04-18	amwaterhouse	featureGroups not null	tree \| commitdiff
2007-04-18	amwaterhouse	Quality does not have text	tree \| commitdiff
2007-04-18	amwaterhouse	Alignment of labels and text	tree \| commitdiff
2007-04-18	amwaterhouse	checks for scrollbar height	tree \| commitdiff
2007-04-18	amwaterhouse	Disable memory checker for now	tree \| commitdiff
2007-04-17	jprocter	paste adds or creates full copies of objects in clipboa...	tree \| commitdiff
2007-04-17	jprocter	pdb files are global to all alignments with new mapping...	tree \| commitdiff
2007-04-16	amwaterhouse	drawSequence must be synchronized	tree \| commitdiff
2007-04-16	amwaterhouse	Too many calls to paintAlignment	tree \| commitdiff
2007-04-13	amwaterhouse	FeatureRenderer takes alignmentPanel	tree \| commitdiff
2007-04-12	amwaterhouse	Number pad keys can be used in cursor mode	tree \| commitdiff
2007-04-11	jprocter	fixed for display of 'null' group features	tree \| commitdiff
2007-04-11	amwaterhouse	Can add features with no group	tree \| commitdiff
2007-04-11	amwaterhouse	Adjustment for hidden columns	tree \| commitdiff
2007-04-11	amwaterhouse	Use same mouse events as scalePanel	tree \| commitdiff
2007-04-05	amwaterhouse	Paste menu item dispalyed on right click. Memory settin...	tree \| commitdiff
2007-04-04	amwaterhouse	newFEatures flag for seq type	tree \| commitdiff
2007-04-04	amwaterhouse	Use newFeatures flag	tree \| commitdiff
2007-04-04	amwaterhouse	combobox for overlapping features	tree \| commitdiff
2007-04-04	amwaterhouse	paintALignment	tree \| commitdiff
2007-04-04	amwaterhouse	Throw exception if pdb result size is zero	tree \| commitdiff
2007-04-02	jprocter	doco change.	tree \| commitdiff
2007-04-02	jprocter	update settings for new groups (always displayed) and...	tree \| commitdiff
2007-04-02	jprocter	bugfix + create/amend whilst feature panel open (still...	tree \| commitdiff
2007-04-02	jprocter	typo fix.	tree \| commitdiff
2007-04-02	amwaterhouse	Allow for scroll bar height	tree \| commitdiff
2007-04-02	jprocter	feature group state and type order preference storage...	tree \| commitdiff
2007-04-02	jprocter	featuresAdded call for transferred PDB features	tree \| commitdiff
2007-04-02	jprocter	featuresAdded() method, state change support between...	tree \| commitdiff
2007-04-02	amwaterhouse	New seq feature name not added here	tree \| commitdiff
2007-04-02	amwaterhouse	getAllFeaturesAtRes replace by findFeaturesAtRes	tree \| commitdiff
2007-04-02	amwaterhouse	destroy destroyed	tree \| commitdiff
2007-04-02	amwaterhouse	destroy destroyed	tree \| commitdiff
2007-04-02	amwaterhouse	Chain might be null	tree \| commitdiff
2007-04-02	amwaterhouse	Destroy Alignment when closing frame	tree \| commitdiff
2007-04-02	amwaterhouse	Must allow for scrollbar height	tree \| commitdiff
2007-03-27	amwaterhouse	Pick atom highlighted	tree \| commitdiff
2007-03-26	amwaterhouse	Add seq mapping for multiple seq 2 pdbs	tree \| commitdiff
2007-03-26	jprocter	PDB residue numberings transfered and alignment view...	tree \| commitdiff
2007-03-23	jprocter	reenable canceldas after a cancel and subsequence fetch	tree \| commitdiff
2007-03-23	jprocter	lastSeq==null to force refresh of sequencefeature array...	tree \| commitdiff
2007-03-23	amwaterhouse	run and halt buttons must have listeners added	tree \| commitdiff
2007-03-23	amwaterhouse	loadingFromArchive flag added	tree \| commitdiff
2007-03-23	amwaterhouse	run halt hidden, help moved to menu item for stupid...	tree \| commitdiff
2007-03-22	amwaterhouse	Now a JPanel, plus some modifications	tree \| commitdiff
2007-03-22	amwaterhouse	Check exploded pos is not the same as current frame	tree \| commitdiff
2007-03-22	amwaterhouse	Set gatherViewsHere false when making a new tab	tree \| commitdiff
2007-03-22	amwaterhouse	Saves structures	tree \| commitdiff
2007-03-22	amwaterhouse	Jalview colours added to Jmol	tree \| commitdiff
2007-03-19	jprocter	translate aligned cDNA to aligned peptide	tree \| commitdiff
2007-03-19	jprocter	retrieve and parse EMBL records to view exons.	tree \| commitdiff
2007-03-19	jprocter	convenience method to get visible selected region.	tree \| commitdiff
2007-03-19	jprocter	null exception when annotation created with no description.	tree \| commitdiff
2007-02-27	amwaterhouse	Use paintAlignment	tree \| commitdiff
2007-02-27	amwaterhouse	jmol added	tree \| commitdiff
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