Merge branch 'patch/JAL-4345_pae_epas1_doubleclick' into develop
[jalview.git] / src / jalview / gui /
2023-03-20 James ProcterMerge branch 'develop' into features/JAL-4134_treeviewe...
2023-03-20 James ProcterJAL-4150 test and quick patch copying code from AlignFr...
2023-03-20 James ProcterJAL-2349 JAL-4134 Console log messages for contact...
2023-03-20 James ProcterJAL-4134 propagate column selection changes in tree...
2023-03-20 James ProcterJAL-4134 fix off-by-one in selection
2023-03-20 James ProcterJAL-4134 fix NPEs when matrix not resolved or alignment...
2023-03-20 James ProcterJAL-4134 better popup menu name ‘Tree for Contact Matrix’
2023-03-17 Ben SoaresJAL-629 All applications System.exits going through...
2023-03-17 James ProcterJAL-4134 fix up column selection when hidden regions...
2023-03-17 James ProcterJAL-4134 store/restore Newick tree for PAE annotation row
2023-03-15 James ProcterJAL-4091 JAL-4147 - revised annotation label display...
2023-03-15 Ben SoaresJAL-629 Commands more objecty, less classy. FileLoader...
2023-03-08 James ProcterJAL-2349 handle matrix_clicked on mouse_release rather...
2023-03-08 James ProcterMerge branch 'features/r2_11_2_alphafold/JAL-629' into...
2023-03-08 Ben SoaresJAL-629 stash some TFType and PAEFile info into a PDBEntry
2023-03-06 Ben SoaresJAL-629 Fix null AlignPanel. More descriptive label...
2023-03-03 Ben SoaresJAL-629 Improved consistency of ArgParser classes ...
2023-03-02 Ben SoaresJAL-629 Removal of unnecessary methods. Set pLTTD tempf...
2023-03-02 Ben SoaresJAL-629 Some refactoring to allow more flexible use...
2023-03-01 James ProcterJAL-4134 hold ctrl to select groups containing rows...
2023-02-27 Ben SoaresJAL-629 add AF examples for FER1_SPIOL. Link and displa...
2023-02-27 James ProcterJAL-4134 tree panel shouldn’t try to redraw before...
2023-02-27 James ProcterJAL-4134 leaves marked when columns are selected -...
2023-02-27 James ProcterJAL-4134 TODO: alternative way of performing interactiv...
2023-02-27 James ProcterJAL-4134 display tree for columns - selecting an intern...
2023-02-27 James ProcterJAL-4134 allow tree groups to be stored/recovered on...
2023-02-27 Ben SoaresJAL-629 Fix Exceptions when running with CLI not headless
2023-02-27 Ben SoaresJAL-629 Guesstimate whether to set pLDDT with PDB file
2023-02-27 Ben SoaresJAL-629 removed debug prints. added .cif. added some...
2023-02-27 James ProcterMerge branch 'develop' into features/JAL-4134_treeviewe...
2023-02-26 Ben SoaresJAL-629 PAE matrix file guesstimate from filename
2023-02-24 Ben SoaresJAL-629 Position GUI widgets for PDF file options....
2023-02-24 James ProcterMerge branch 'features/r2_11_2_alphafold/JAL-629' into... features/JAL-3858_PAEsInProjects
2023-02-23 James ProcterJAL-4134 - brutal hack to build a tree clustering colum...
2023-02-23 James ProcterJAL-4134 - refactor tree calculation code to work with...
2023-02-23 James ProcterJAL-4133 update validChar width when font is changed...
2023-02-22 James ProcterJAL-4133 store/restore alignment view’s charWidth and...
2023-02-22 James ProcterJAL-629 make sure we show GUI when not driven programma...
2023-02-22 James ProcterJAL-4095 slightly better threshold setting and todos...
2023-02-22 James ProcterJAL-4095 magic fill behaviour is PAE specific
2023-02-22 Ben SoaresMerge branch 'develop' into features/r2_11_2_alphafold...
2023-02-22 James ProcterJAL-4027 JAL-3858 rename CUSTOM_RENDERER to CONTACT_MAT...
2023-02-20 Ben SoaresJAL-4128 Catch RasterFormatException caused whilst... bug/JAL-4128_resizing_overview_with_solid_drags_causes_exception
2023-02-20 Ben SoaresMerge branch 'develop' into bug/JAL-4125_flatlaf_quitha... bug/JAL-4125_flatlaf_quithandler_warning_doesnt_display_properly
2023-02-16 James ProcterMerge branch 'features/r2_11_2_alphafold/JAL-629' into...
2023-02-13 Ben SoaresMerge branch 'merge/JAL-1988_JAL-3772+JAL-3416+JAL...
2023-02-13 Ben SoaresJAL-4125 Move confirmation of closing external viewer...
2023-02-13 James ProcterMerge branch 'develop' into feature/JAL-1713_overviewIn...
2023-02-09 Ben SoaresJAL-4125 Additions to JvOptionPane and QuitHandler...
2023-02-03 Ben SoaresJAL-629 Fasta sequence id reading whitespace fix. Flexi...
2023-02-03 James ProcterJAL-1551 remove temp file in src
2023-02-03 James ProcterMerge branch 'develop' into features/r2_11_2_alphafold...
2023-01-31 James ProcterJAL-1713 update from Jalview 2.11.3 develop
2023-01-30 Ben SoaresJAL-1988 Make sensible choices if only the opening... merge/JAL-1988_JAL-3772+JAL-3416+JAL-4054+JAL-4064
2023-01-24 James ProcterMerge branch 'merge/JAL-1988_JAL-3772+JAL-3416+JAL...
2023-01-24 James ProcterJAL-629 hacked in --tempfac-shading - hardcoded to...
2023-01-24 James ProcterMerge branch 'features/r2_11_2_alphafold/JAL-2349_JAL...
2023-01-24 James ProcterMerge branch 'develop' (JAL-4102 2.11.2.6 patch release... features/r2_11_2_alphafold/JAL-2349_JAL-3855
2023-01-23 Ben SoaresJAL-629 Attempts to add PAE to structure. --headless...
2023-01-20 Jim ProcterJAL-4114 model_page_url not required in v2.0 response patch/JAL-4114_updated_3dbeacons_api
2023-01-20 Jim ProcterJAL-4114 only rank model qualities that are computed...
2023-01-20 Jim ProcterJAL-4114 alphafold now marked as AB-INITIO so adjust...
2023-01-20 Jim ProcterJAL-4114 additional warnings when PDBe doesn’t return...
2023-01-17 Ben SoaresJAL-3416 No longer needed
2023-01-16 Ben SoaresJAL-3416 More tweaking of FlatLaf. Problem with macOS...
2023-01-06 Ben SoaresJAL-3416 remove a missed panel titlebar icon in TreePanel
2022-12-15 Ben SoaresJAL-629 move SubId to more logical place. Attempt remov...
2022-12-14 Ben SoaresJAL-629 Open Structure Viewer from cmdline
2022-12-08 Ben SoaresJAL-629 fix opening files
2022-11-23 Ben SoaresJAL-629 Doing things with the command line arguments
2022-11-16 Ben SoaresMerge branch 'improvement/JAL-3416_default_to_LIVE_DRAG...
2022-11-16 Ben SoaresJAL-3416 make flatlaf default for linux improvement/JAL-3416_default_to_LIVE_DRAG_MODE_for_flatlaf
2022-11-09 Ben SoaresJAL-3416 Add necessary logo to non-internal Frames
2022-11-09 Ben SoaresMerge branch 'improvement/JAL-3416_default_to_LIVE_DRAG...
2022-11-09 Ben SoaresJAL-3416 Add necessary logo to non-internal Frames
2022-11-09 Ben SoaresMerge branch 'improvement/JAL-3416_default_to_LIVE_DRAG...
2022-11-09 Ben SoaresJAL-3416 Remove all JFrame/JInternalFrame icons (set...
2022-11-09 Ben SoaresMerge branch 'bug/JAL-1988_JAL-3772_improved_quit_handl...
2022-11-09 Ben SoaresJAL-1988 JAL-3772 Test for FORCE_QUIT whilst saving... bug/JAL-1988_JAL-3772_improved_quit_handling
2022-11-08 Ben SoaresMerge branch 'bug/JAL-1988_JAL-3772_improved_quit_handl...
2022-11-08 Ben SoaresJAL-1988 JAL-3776 Formatting JvOptionPane
2022-11-08 Ben SoaresJAL-1988 JAL-3772 Fixes highlighted by tests
2022-11-04 Ben SoaresJAL-3416 Added logoIcon to quit (and potentially other...
2022-11-04 Ben SoaresJAL-1998 JAL-3772 JAL-3416 Merge conflict resolution...
2022-11-03 Ben SoaresJAL-3416 File Chooser iconified, JvOptionPanes iconifie...
2022-11-03 Jim ProcterJAL-3855 JAL-4095 simple picking of ranges adjacent...
2022-11-03 Ben SoaresJAL-1988 JAL-3772 Allow other window closing dialogs...
2022-11-03 Ben SoaresJAL-3416 More JInternalFrame icons
2022-11-03 Ben SoaresJAL-1988 JAL-3772 Tidying of unspecified Callable decla...
2022-11-03 Ben SoaresJAL-3416 Start to add JInternalFrame icons (to replace...
2022-11-02 Ben SoaresJAL-1988 JAL-3772 Moving packages to somewhere more...
2022-11-01 Ben SoaresJAL-3416 set flatlaf default drag mode to LIVE_DRAG_MODE
2022-10-30 Jim ProcterJAL-2349 JAL-3855 bizarre resizing exception when resiz...
2022-10-30 Jim ProcterJAL-4091 lines to associate rows sharing same sequence...
2022-10-29 Jim ProcterJAL-4094 shift+click drag up/down to resize all annotat...
2022-10-29 Jim ProcterJAL-4091 - noodling about including the names for seque...
2022-10-29 Jim ProcterMerge branch 'features/JAL-4061_and_JAL-4062_findselect...
2022-10-28 Ben SoaresJAL-1988 JAL-3772 Removed 'Wait' button from waitDialog...
2022-10-27 Ben SoaresJAL-1988 Allow generic Container object in JvOptionPane...
2022-10-26 Jim ProcterJAL-4086 quick and dirty mouseovers on ruler highlighti...
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