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Merge branch 'bug/JAL-2210_hack_for_Release_2_10' into develop
[jalview.git]
/
src
/
jalview
/
gui
/
2016-07-23
Jim Procter
JAL-2154 patch the hack (Jalview2XML tests pass)
tree
|
commitdiff
2016-07-20
gmungoc
JAL-2154 poke JSeq start/end into Vamsas sequence
tree
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commitdiff
2016-07-20
gmungoc
JAL-2023 avoid writing / loading empty mappings
tree
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commitdiff
2016-07-19
Jim Procter
Merge branch 'develop' into efficiency/JAL-2034_JAL...
tree
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commitdiff
2016-07-18
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-07-18
gmungoc
JAL-2099 JAL-2100 port scale number / hidden column...
tree
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commitdiff
2016-07-18
Jim Procter
Merge branch 'features/JAL-2068groovyAnnotationWorker...
tree
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commitdiff
2016-07-18
Jim Procter
JAL-2145 JAL-1551 formatting
tree
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commitdiff
2016-07-18
Jim Procter
JAL-2145 fix: build alignments before building AlignFra...
tree
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commitdiff
2016-07-12
Jim Procter
JAL-2144 TODO - new methods for canonicalisation and...
tree
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commitdiff
2016-07-12
Jim Procter
JAL-2110 avoid potential race condition where user...
tree
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commitdiff
2016-07-12
Jim Procter
JAL-2110 TODO for JAL-2131
tree
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commitdiff
2016-07-06
gmungoc
JAL-2110 cross-refs from protein to show cds not non...
tree
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commitdiff
2016-07-04
gmungoc
JAL-2110 use shared dataset when copying alignment...
tree
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commitdiff
2016-07-04
gmungoc
Revert "JAL-2110 use shared alignment dataset when...
tree
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commitdiff
2016-07-04
gmungoc
JAL-2110 use shared alignment dataset when copying...
tree
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commitdiff
2016-07-01
gmungoc
JAL-2110 bug fixing and tidying for get cross-refs
tree
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commitdiff
2016-07-01
gmungoc
JAL-2110 set reasonable bounds to initial split of...
tree
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commitdiff
2016-07-01
gmungoc
JAL-2110 add 'products' parameter to filter results...
tree
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commitdiff
2016-06-30
gmungoc
Merge branch 'develop' into features/JAL-2110_crossRefD...
tree
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commitdiff
2016-06-30
tcofoegbu
JAL-2074 Improvement to StructureChooser and FTS interf...
tree
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commitdiff
2016-06-29
gmungoc
Merge branch 'develop' into features/JAL-2110_crossRefD...
tree
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commitdiff
2016-06-29
gmungoc
JAL-1369 fix bug reloading a project with group sequenc...
tree
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commitdiff
2016-06-27
gmungoc
tidied loop with generic iteration / loop variable
tree
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commitdiff
2016-06-27
gmungoc
JAL-2133 refactored duplicated code to AlignmentViewport
tree
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commitdiff
2016-06-24
tcofoegbu
JAL-1960 updated unit test to include the test case...
tree
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commitdiff
2016-06-23
Jim Procter
Merge branch 'develop' into merge_JAL-2110
tree
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commitdiff
2016-06-22
gmungoc
JAL-1982 defensive test for null array of annotations
tree
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commitdiff
2016-06-22
Jim Procter
JAL-2110 remove hardwired detection of search context...
tree
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commitdiff
2016-06-21
Jim Procter
Merge branch 'features/JAL-2110_crossRefDuplications...
tree
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commitdiff
2016-06-21
Jim Procter
Merge branch 'develop' of source.jalview.org/git/jalvie...
tree
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commitdiff
2016-06-21
gmungoc
JAL-2074 suppress prompt to save closed Groovy script...
tree
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commitdiff
2016-06-21
Jim Procter
Merge branch 'features/JAL-1956_featureStyles' into...
tree
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commitdiff
2016-06-21
gmungoc
JAL-2074 reuse Groovy window when reopening; rebind...
tree
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commitdiff
2016-06-21
Jim Procter
JAL-1369 mark reference sequence & view state and resto...
tree
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commitdiff
2016-06-21
Jim Procter
JAL-1369 project XML efficiency TODO
tree
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commitdiff
2016-06-21
Jim Procter
JAL-1369 dead code TODO?
tree
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commitdiff
2016-06-21
Jim Procter
JAL-1369 ensure *real* alignment’s metadata written...
tree
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commitdiff
2016-06-20
Jim Procter
JAL-1551 tidy
tree
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commitdiff
2016-06-20
Jim Procter
JAL-2065 don’t pass stale group reference
tree
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commitdiff
2016-06-20
Jim Procter
JAL-2068 avoid ArrayIndexOutOfBounds when consensus...
tree
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commitdiff
2016-06-20
Jim Procter
JAL-2065 check position lies within group before gettin...
tree
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commitdiff
2016-06-20
Jim Procter
Merge branch 'develop' into features/JAL-2068groovyAnno...
features/JAL-2068groovyAnnotationWorker
tree
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commitdiff
2016-06-20
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-06-20
tcofoegbu
JAL-1823 Deleted two obsolete methods in PopupMenu...
tree
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commitdiff
2016-06-20
Jim Procter
Merge branch 'develop' into features/JAL-1812_JAL-2083_...
features/JAL-1812_JAL-2083_groovyBinding
tree
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commitdiff
2016-06-19
Jim Procter
JAL-2110 JAL-2131 JAL-1765 remove reference to jalview...
tree
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commitdiff
2016-06-16
gmungoc
JAL-1993 close sequence fetcher when opening database...
tree
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commitdiff
2016-06-16
gmungoc
JAL-1993 hide sequence fetcher dialogue until database...
tree
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commitdiff
2016-06-15
Jim Procter
Merge branch 'develop' into features/JAL-2110_crossRefD...
tree
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commitdiff
2016-06-15
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-06-15
tcofoegbu
JAL-2002 disabled 'Best Uniport Coverage' filter. JAL...
tree
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commitdiff
2016-06-15
gmungoc
JAL-2025 unit tests added
tree
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commitdiff
2016-06-14
gmungoc
Merge branch 'develop' into features/JAL-2110_crossRefD...
tree
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commitdiff
2016-06-14
gmungoc
JAL-2110 fixes to dbref resolution and mappings, use...
tree
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commitdiff
2016-06-14
tcofoegbu
JAL-2047 resolved structure chooser's displayed column...
tree
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commitdiff
2016-06-09
gmungoc
JAL-2110 work in progress
tree
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commitdiff
2016-06-09
gmungoc
Merge branch 'develop' into features/JAL-2110_makeSense...
tree
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commitdiff
2016-06-08
tcofoegbu
JAL-1479 JAL- Fix to eradicate duplicate mapping output...
tree
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commitdiff
2016-06-06
tcofoegbu
JAL-1919, JAL-1960 fix to disable refetching dbrefs...
tree
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commitdiff
2016-06-06
tcofoegbu
JAL-1944 bugfix for wrong alignment numbering when...
tree
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commitdiff
2016-06-03
gmungoc
JAL-2110 random stuff
tree
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commitdiff
2016-06-02
gmungoc
Merge branch 'develop' into features/JAL-2110_makeSense...
tree
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commitdiff
2016-06-02
gmungoc
JAL-1424 corrected typos in message text keys
tree
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commitdiff
2016-06-01
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-06-01
tcofoegbu
JAL-1944 updated bugfix implementation
tree
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commitdiff
2016-06-01
gmungoc
JAL-1424 utility to check resource bundle labels used...
tree
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commitdiff
2016-05-31
tcofoegbu
merge
tree
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commitdiff
2016-05-31
tcofoegbu
JAL-1944 fix for visible seqs sometimes been replaced...
tree
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commitdiff
2016-05-31
gmungoc
JAL-2023 adjustments to mappings added for split frame...
tree
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commitdiff
2016-05-31
Jim Procter
Merge branch 'jims/291patches' into develop
tree
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commitdiff
2016-05-31
gmungoc
JAL-1011 JAL-1989 don't mirror column-only selections...
tree
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commitdiff
2016-05-30
Jim Procter
JAL-553 JAL-1557 always send selections after triggerin...
tree
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commitdiff
2016-05-30
Jim Procter
JAL-1557 allow group associated rows to be used to...
tree
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commitdiff
2016-05-30
Jim Procter
JAL-2077 fix: convenience method and checks for CMD...
tree
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commitdiff
2016-05-30
Jim Procter
Merge branch 'develop' into efficiency/JAL-2034_JAL...
tree
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commitdiff
2016-05-30
Jim Procter
JAL-1552 fix JAL-2122 resolve File->string before addin...
tree
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commitdiff
2016-05-27
gmungoc
JAL-1989 tightened up use of flag for 'column selection...
tree
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commitdiff
2016-05-27
gmungoc
JAL-1911 use existing object when setting 'Prompt each...
tree
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commitdiff
2016-05-27
tcofoegbu
merge
tree
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commitdiff
2016-05-27
tcofoegbu
JAL-1823 improvement to all chain code specification...
tree
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commitdiff
2016-05-27
tcofoegbu
JAL-1911 further improvement to bugfix - do not save...
tree
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commitdiff
2016-05-27
gmungoc
JAL-1942 small tidy (formatting, explict imports, typed...
tree
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commitdiff
2016-05-26
tcofoegbu
JAL-1911 improvement to bugfix - do not save i18n text...
tree
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commitdiff
2016-05-26
gmungoc
JAL-391 add reverse / complement to command history...
tree
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commitdiff
2016-05-26
Jim Procter
Merge branch 'develop' of source.jalview.org/git/jalvie...
tree
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commitdiff
2016-05-26
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2016-05-26
Jim Procter
JAL-1552 refactor shared dataflavor hander
tree
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commitdiff
2016-05-26
gmungoc
JAL-1993 open sequence fetcher tree on 'fetch sequences'
tree
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commitdiff
2016-05-26
Jim Procter
JAL-1552 extra debug logging for dataflavor if drop...
tree
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commitdiff
2016-05-26
tcofoegbu
merge
tree
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commitdiff
2016-05-26
tcofoegbu
JAL-1911 bugfix - do not save i18n text in preference...
tree
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commitdiff
2016-05-25
Jim Procter
JAL-1522 patch - try to pick best text dataflavor
tree
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commitdiff
2016-05-20
gmungoc
JAL-2110 unit tests for and minor refactoring of CrossRef
tree
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commitdiff
2016-05-13
gmungoc
JAL-2105 capture Ensembl data version, check REST versi...
tree
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commitdiff
2016-05-10
gmungoc
Merge branch 'develop' into features/JAL-1956_featureStyles
tree
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commitdiff
2016-05-09
gmungoc
JAL-2018 export graduated feature colours correctly
tree
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commitdiff
2016-05-06
Jim Procter
JAL-192 JAL-2099 unused variables
tree
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commitdiff
2016-05-06
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2016-05-06
Jim Procter
JAL-192 JAL-2099 reuse refactored scale code for wrappe...
tree
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commitdiff
next