JAL-2446 optimised new method to find feature colour for overview
[jalview.git] / src / jalview / gui /
2017-03-22 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-03-22 kiramtJAL-2388 Reinstated original overview checks for annota...
2017-03-22 kiramtMerge remote-tracking branch 'origin/develop' into
2017-03-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-653_JAL-1766_htslib_refseqsupport
2017-03-21 gmungocJAL-2438 removed (non-functional) lastSeq, lastSequence...
2017-03-21 gmungocJAL-2243 update discovered features on opening structur...
2017-03-21 Jim ProcterMerge branch 'features/JAL-2388OverviewWindow' into...
2017-03-20 gmungocJAL-2446 FeatureStore with NCList - work in progress
2017-03-20 Jim ProcterMerge branch 'bug/JAL-2421overviewboxflicker' into...
2017-03-20 kiramtJAL-2388 Comment typo
2017-03-16 kiramtJAL-2388 Applied ViewportRanges to code
2017-03-16 kiramtJAL-2388 Renamed viewport position props to viewport...
2017-03-15 kiramtJAL-2388 Unit tests and tidies
2017-03-15 gmungocJAL-2443 push getResidueBoxColour inside getResidueColour
2017-03-14 kiramtJAL-2439 Fixes to out-by-one sequence indexing in gui...
2017-03-13 gmungocJAL-2438 FeatureColourFinder refactored from FeatureRen...
2017-03-09 kiramtJAL-2388 Minor fix for annotation graph, removed unit...
2017-03-07 gmungocJAL-2295 status messages for Chimera attributes set...
2017-03-07 kiramtJAL-2388 Missed commit
2017-03-06 kiramtJAL-2388 Dependency tidy
2017-03-06 kiramtJAL-2388 Remove OverviewDimensions dependency on gui...
2017-03-06 kiramtJAL-2388 Corrected overview panel behaviour, updated...
2017-03-03 kiramtJAL-2388 Initial removal of hidden cols/seqs out of...
2017-03-02 gmungocJAL-2295 tweak order and wording of Superpose menu...
2017-03-02 gmungocJAL-2295 make 'Jmol' menu appear; enable/disable Superp...
2017-03-01 kiramtJAL-2388 Reverted to previous
2017-03-01 gmungocMerge branch 'features/JAL-2295setChimeraAttributes...
2017-03-01 kiramtJAL-2388 Preliminary refactor check-in, does not compile
2017-02-28 kiramtJAL-2388 First move of endRes etc out of AlignmentViewp...
2017-02-27 kiramtJAL-2388 Make startRes,startSeq,endRes,endSeq private...
2017-02-27 kiramtJAL-2388 Minor refactoring
2017-02-23 kiramtJAL-2388 Unit tests in progress
2017-02-21 kiramtMerge branch 'bug/JAL-2421overviewboxflicker' into
2017-02-21 kiramtMerge branch 'develop' into features/JAL-2388OverviewWindow
2017-02-21 kiramtJAL-2421 Unit test
2017-02-17 kiramtJAL-2388 Incomplete unit tests
2017-02-17 kiramtJAL-2421 Fix to alignment panel scroll values, and...
2017-02-15 Jim ProcterJAL-2374 JAL-2419 - TODO suspiciously redundant nested... bug/JAL-2374_JAL-2419_overlappinggroups_currentselection_popupmenu
2017-02-15 Jim Procterfix for JAL-2419 - don’t trash the current selection
2017-02-15 Jim ProcterJAL-2374 don’t search twice for containing group to...
2017-02-14 kiramtJAL-2388 Removed unnecessary CommandListener interface...
2017-02-10 gmungocJAL-2371 small move of code, typo correction
2017-02-09 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-02-09 kiramtJAL-2388 Initial refactor of OverviewPanel
2017-02-09 Jim ProcterMerge branch 'develop' into features/JAL-2316 features/JAL-2316
2017-02-09 gmungocJAL-2401 change 'Lower Case Colour' to checkbox with...
2017-02-09 gmungocJAL-2371 ensure some colour scheme (may be None) is...
2017-02-08 gmungocJAL-2405 set context on selection group for tailored...
2017-02-08 gmungocJAL-2401 fix for NPE on selectedButtons, tweak for...
2017-02-08 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-02-07 Jim ProcterMerge branch 'features/JAL-2371collectionColourScheme...
2017-02-07 gmungocJAL-2401 Lower Case Colour toggleable, help text added
2017-01-31 gmungocJAL-2371 rename global/viewportColourScheme to residueS...
2017-01-31 gmungocJAL-2385 more tests/bug fixes mostly for gui.SliderPane...
2017-01-27 gmungocJAL-2371 CollectionColourScheme renamed ResidueShader...
2017-01-27 kiramtJAL-2366 Removed unneeded setEnabled calls
2017-01-26 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-01-26 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-26 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-25 gmungocJAL-2344 push Cache.getProperty("LAST_DIRECTORY") insid...
2017-01-23 gmungocJAL-2386 unit tests for change colour (and minor refact...
2017-01-23 gmungocJAL-2386 simplify changeColour (doesn't change colour...
2017-01-20 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-20 gmungocJAL-2385 update slider settings when switching slider...
2017-01-20 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-20 gmungocJAL-2383 check for null, spelling
2017-01-20 gmungocJAL-2383 make popup colour menu order and wording consi...
2017-01-20 gmungocJAL-2383 restore group conservation slider setting...
2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-19 gmungocJAL-2383 restore PID colour threshold from project...
2017-01-19 gmungocJAL-2370 corrected applet mouse drag, refactored into...
2017-01-17 gmungocJAL-1933 update threshold on focus lost in text field features/JAL-2295setChimeraAttributes
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2295setChimera...
2017-01-17 gmungocJAL-2370 fix bug when hiding a range including two...
2017-01-17 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-12 gmungocJAL-2379 null references to PCA model when panel is...
2017-01-12 gmungocJAL-2344 now flagging formats as 'identifiable' instead...
2017-01-11 gmungocJAL-2344 separated AlignmentFileI into AlignmentFileRea...
2017-01-11 gmungocJAL-2344 FileFormats singleton for formats, FileFormatI...
2017-01-09 gmungocJAL-2371 remove ColourSchemeI.findColour(c), pure inter...
2017-01-09 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-01-06 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-06 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-05 gmungocJAL-2374 fix popup out by one and multiple groups bugs
2017-01-05 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-05 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-05 gmungocJAL-2373 set state of Above PID, By Conservation in...
2017-01-05 gmungocJAL-2371 tests added
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI
2016-12-29 gmungocJAL-2630 first pass groovy colour scheme (with slight...
2016-12-23 gmungocJAL-2360 removed UserDefinedColours.userColourSchemes
2016-12-22 gmungocJAL-2360 fix bug that prematurely created a SequenceGroup
2016-12-22 gmungocJAL-2360 structure viewers now using ColourMenuHelper...
2016-12-21 gmungocJAL-2360 set new/loaded colour scheme name correctly
2016-12-21 gmungocJAL-2360 ColourMenuHelper now builds and selects items...
2016-12-21 gmungocJAL-2360 fix incorrect action on Cancel user defined...
2016-12-20 gmungocJAL-2360 testRegisterColourScheme to demonstrate a...
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