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Merge branch 'bug/JAL-3807_jpred-with-slivka' into alpha/JAL-3066_Jalview_212_slivka...
[jalview.git]
/
src
/
jalview
/
hmmer
/
HMMSearch.java
2019-07-12
Thomas
JAL-2629 hmmer searches now read domain rather than...
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2019-07-11
Thomas
JAL-2629 hmm search UI and structural improvements...
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2019-07-10
tva
JAL-2629 fix hmmsearch/jackhmmer assigning incorrect...
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2019-07-10
tva
JAL-2629 fix hmsearch and jackhmmer not being able...
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2019-07-10
tva
JAL-2629 hmmsearch # of new sequences now only displaye...
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2019-07-10
tva
JAL-2629 fix hmmsearch/jackhmmer being unable to search...
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2019-07-05
tva
JAL-2629 uniquify all hmmer command sequence outputs
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2019-07-05
tva
JAL-2629 fix file format issues preventing hmmsearch...
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2019-07-03
tva
JAL-2629 fix hmm on alignment being deleted upon runnin...
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2019-07-03
tva
JAL-2629 can now filter by sequence e-value or bit...
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2019-07-02
tva
JAL-2629 add simple jackhmmer functionality
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2019-06-28
tva
JAL-3336 add better method of determining where data...
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2019-06-28
tva
JAL-3336 fix hmmsearch failing when parsing score table
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2019-06-06
tva
JAL-3285 fix incorrect file paths on HMMAlign/Search...
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2018-05-31
Jim Procter
JAL-1950 JAL-2629 insert gaps into HMM used to search...
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2018-05-31
Jim Procter
JAL-2629 (probably not right issue) JAL-1950 - make...
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2018-05-31
Jim Procter
JAL-3011 JAL-2719 JAL-1958 add posterior probability...
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2018-05-30
gmungoc
JAL-3005 JAL-2629 file chooser argument for HMM search...
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2018-05-22
gmungoc
JAL-2629 method refactor and menu tidying
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2018-05-15
gmungoc
JAL-2719 parse bit score annotation from search results
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2018-05-15
gmungoc
JAL-2629 JAL-2937 respect 'align automatically' option...
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2018-05-09
gmungoc
JAL-2714 HMMSearch cutoff by E-Value, Score or None
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2018-04-18
gmungoc
JAL-2629 corrected cutoff parameter passing to hmmsearch
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2018-04-17
gmungoc
Merge branch 'features/mchmmer' of https://source.jalvi...
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2018-04-17
gmungoc
JAL-2629 choice of hmm profile now a parameter not...
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2018-04-17
Mungo Carstairs
JAL-2937 working Cygwin bash execution of hmmbuild...
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2018-04-09
Mungo Carstairs
JAL-2937 Cygwin path preference, method refactoring
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2018-03-23
gmungoc
JAL-2629 pad gaps when exporting alignment as 'database...
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2018-03-07
gmungoc
JAL-2629 storage and lifecycle of alignment/group HMM...
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