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Merge branch 'bug/JAL-3807_jpred-with-slivka' into alpha/JAL-3066_Jalview_212_slivka...
[jalview.git]
/
src
/
jalview
/
hmmer
/
HmmerCommand.java
2020-05-18
Jim Procter
Merge branch 'alpha/JAL-3362_Jalview_212_alpha' into...
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commitdiff
2019-07-12
Thomas
JAL-2629 can now choose number of jackhmmer iterations
merge/JAL-3285_mchmmer_with_211_develop
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2019-07-12
Thomas
JAL-2629 hmmer searches now read domain rather than...
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2019-07-11
Thomas
JAL-2629 hmm search UI and structural improvements...
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2019-07-10
tva
JAL-2629 fix hmmsearch/jackhmmer being unable to search...
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2019-07-05
tva
JAL-2629 uniquify all hmmer command sequence outputs
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2019-07-05
tva
JAL-2629 fix file format issues preventing hmmsearch...
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2019-07-03
tva
JAL-2629 can now filter by sequence e-value or bit...
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2019-07-02
tva
JAL-2629 add simple jackhmmer functionality
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2019-06-06
tva
JAL-3285 fix incorrect file paths on HMMAlign/Search...
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2019-06-06
tva
JAL-3285 add Cygwin environment path fix for Windows
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2018-06-06
gmungoc
JAL-3013 resolve symlink to hmmer binaries folder
features/mchmmer
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2018-04-17
gmungoc
Merge branch 'features/mchmmer' of https://source.jalvi...
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2018-04-17
gmungoc
JAL-2629 choice of hmm profile now a parameter not...
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2018-04-17
Mungo Carstairs
JAL-2937 working Cygwin bash execution of hmmbuild...
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2018-04-09
Mungo Carstairs
JAL-2937 Cygwin path preference, method refactoring
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2018-03-30
gmungoc
JAL-2629 Javadoc updates
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2018-03-23
gmungoc
JAL-2629 pad gaps when exporting alignment as 'database...
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2018-03-07
gmungoc
JAL-2629 storage and lifecycle of alignment/group HMM...
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2018-02-21
gmungoc
JAL-2629 simplifying method signatures in Hmmer command...
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2018-02-20
gmungoc
JAL-2629 removed SequenceI.get/setLastPosition and...
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2018-02-19
gmungoc
JAL-2629 partial refactoring of Hmmer command classes
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