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Check for all gapped seqs
[jalview.git]
/
src
/
jalview
/
io
/
2006-07-19
amwaterhouse
Use Selection group to define sequence range to fetch...
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commitdiff
2006-07-18
amwaterhouse
omitHiddenColumns
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commitdiff
2006-07-17
amwaterhouse
Towards an auto dbref fetcher
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commitdiff
2006-07-14
amwaterhouse
Just fetch features for selected seqs
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commitdiff
2006-07-13
amwaterhouse
Selected DAS sources may differ from default
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commitdiff
2006-07-12
amwaterhouse
Append start and end
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commitdiff
2006-07-07
amwaterhouse
Dont discard label if different to H or E
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commitdiff
2006-07-07
amwaterhouse
Make 1.1 compatible
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commitdiff
2006-07-07
amwaterhouse
Move position of stopLoading for 1.5 people
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commitdiff
2006-07-07
amwaterhouse
make 1.1 compatible
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commitdiff
2006-07-07
amwaterhouse
Dont write graph type twice
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commitdiff
2006-07-07
amwaterhouse
Replaced by AnnotationFile
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commitdiff
2006-06-23
amwaterhouse
Uniprot may have several accession ids
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commitdiff
2006-06-23
amwaterhouse
Parse HTML links from jalview features file
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commitdiff
2006-06-22
amwaterhouse
Takes AlignFrame as arg, to update progressbar
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commitdiff
2006-06-22
amwaterhouse
Ye olde SequenceFeatureFetcher
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commitdiff
2006-06-22
amwaterhouse
Renamed to DBRefFetcher
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commitdiff
2006-06-15
amwaterhouse
Use spice-3d das1 source list for nowjalview/gui/DasSou...
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commitdiff
2006-06-15
amwaterhouse
Fixed to trial registry at the moment
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commitdiff
2006-06-15
amwaterhouse
Not using AxisDasRegistry
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commitdiff
2006-06-15
amwaterhouse
Correction - use start and end
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commitdiff
2006-06-15
amwaterhouse
Dont add start and end for the moment
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commitdiff
2006-06-15
amwaterhouse
Wrap alignment moved to alignFrame
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commitdiff
2006-06-14
amwaterhouse
Fileloading progressbar
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commitdiff
2006-06-14
amwaterhouse
Sequence checks for duplicate features
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commitdiff
2006-06-09
amwaterhouse
setAcceptAllFileFilter fixes bug on MacOSX
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commitdiff
2006-06-09
amwaterhouse
Function not used
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commitdiff
2006-06-09
amwaterhouse
Annotation/feature exporter
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commitdiff
2006-06-08
jprocter
Introduced DbRefEntry to DasSourceCoordinateSystem...
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commitdiff
2006-06-07
amwaterhouse
Wrap alignment added to preferences
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commitdiff
2006-06-07
amwaterhouse
NEW FILES
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commitdiff
2006-05-18
jprocter
added future method comment
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commitdiff
2006-05-17
jprocter
added unofficial support for concise output parsing...
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commitdiff
2006-05-17
jprocter
Refactored code for creating annotation objects from...
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commitdiff
2006-05-15
amwaterhouse
All or nothing drawing display char
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commitdiff
2006-05-12
amwaterhouse
pass viewport to fileloader, as we need to fireproperty...
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commitdiff
2006-05-11
amwaterhouse
Slightly smaller recent panel
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commitdiff
2006-05-11
amwaterhouse
Recently loaded files, urls, append sequences to Alignment
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commitdiff
2006-05-10
amwaterhouse
Annotations must createSequenceMapping if seqRef not...
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commitdiff
2006-04-10
amwaterhouse
Fixed protein desc bug
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commitdiff
2006-04-07
amwaterhouse
ModellerOutput set in preferences
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commitdiff
2006-04-04
amwaterhouse
Jalview2XML does not use static load
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commitdiff
2006-04-04
amwaterhouse
Specify com.stevesoft.pat.Regex
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commitdiff
2006-03-24
amwaterhouse
Trim line
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commitdiff
2006-03-24
amwaterhouse
Features added to group Uniprot
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commitdiff
2006-03-13
jprocter
fixes bug 0013013 but reveals lack of a 'features retri...
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commitdiff
2006-03-08
amwaterhouse
Able to read resources from Zip file
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commitdiff
2006-02-24
amwaterhouse
P1 changed to N1
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commitdiff
2006-02-24
amwaterhouse
Use add feature instead of replacing existing values
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commitdiff
2006-02-15
amwaterhouse
SetThreshold replaces addGraphLine
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commitdiff
2006-02-08
amwaterhouse
Report invalid chars
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commitdiff
2006-02-03
amwaterhouse
Java 1.1 compatible
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commitdiff
2006-02-03
amwaterhouse
Many changes
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commitdiff
2006-01-30
amwaterhouse
New files
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commitdiff
2006-01-12
jprocter
PIR file IO now preserves and parses Modeller style...
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commitdiff
2005-12-16
jprocter
Todo notes for feature issue: 0011711
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commitdiff
2005-12-12
amwaterhouse
Change title
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commitdiff
2005-12-12
amwaterhouse
Dont bother with WSWUBlast for now
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commitdiff
2005-12-08
amwaterhouse
UnknownSequences.remove moved out of loop
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commitdiff
2005-12-06
amwaterhouse
after merge
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commitdiff
2005-11-18
jprocter
Fixed bug dragonfly.compbio.dundee.ac.uk/mantis/view...
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commitdiff
2005-10-07
amwaterhouse
Quick fix for reading sequence
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commitdiff
2005-10-05
amwaterhouse
Sequence start end added for the time being
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commitdiff
2005-09-30
amwaterhouse
Remove redundancy in Eclipse
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commitdiff
2005-09-22
amwaterhouse
Create instance of FormatAdapter
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commitdiff
2005-09-22
amwaterhouse
Wrap alignment with annotations
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commitdiff
2005-09-22
amwaterhouse
Check if filefilter is null
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commitdiff
2005-09-15
amwaterhouse
Use equalsIgnoreCase
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commitdiff
2005-09-12
amwaterhouse
Always return true for directories
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commitdiff
2005-09-01
amwaterhouse
Add header to file
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commitdiff
2005-08-23
amwaterhouse
Sleep for longer
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commitdiff
2005-08-23
amwaterhouse
Finalize formats
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commitdiff
2005-08-23
amwaterhouse
Regex should not be static in file loader
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commitdiff
2005-08-23
amwaterhouse
Is fileChooser instanceof Basic
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commitdiff
2005-08-22
jprocter
fixed hanging on job finished bug.
tree
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commitdiff
2005-08-18
amwaterhouse
Return if UNIPROT_CACHE is null
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commitdiff
2005-08-17
amwaterhouse
No basicDirectoryModel on the Mac
tree
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commitdiff
2005-08-17
amwaterhouse
Error reply is kept separate from file type
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commitdiff
2005-08-17
amwaterhouse
Put basic file chooser test in try catch loop
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commitdiff
2005-08-16
amwaterhouse
Remove redundant imports
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commitdiff
2005-08-15
amwaterhouse
Use default fileChooser for now
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commitdiff
2005-08-09
amwaterhouse
Cache.getDefault
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commitdiff
2005-08-09
amwaterhouse
Try/catch loading default icons
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commitdiff
2005-08-03
amwaterhouse
1 & -1
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commitdiff
2005-08-03
amwaterhouse
FileLoading removed from desktop
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commitdiff
2005-07-29
amwaterhouse
use 1 & -1 if start/end not specified
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commitdiff
2005-07-11
amwaterhouse
this.installIcons
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commitdiff
2005-07-06
amwaterhouse
Sequence to Uppercase before checksum
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commitdiff
2005-06-30
amwaterhouse
Formatting changes
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commitdiff
2005-06-16
amwaterhouse
dont convert to uppercase
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commitdiff
2005-06-15
amwaterhouse
use .jalview.uniprot.xml
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commitdiff
2005-06-14
amwaterhouse
change name of uniprot file
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commitdiff
2005-06-14
jprocter
Arbitrary decision to keep friendly id name when readin...
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commitdiff
2005-06-13
amwaterhouse
uses paintrefresher
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commitdiff
2005-06-10
amwaterhouse
remove imports
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commitdiff
2005-06-08
amwaterhouse
if missing forward slash
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commitdiff
2005-06-08
amwaterhouse
Formatted source
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commitdiff
2005-06-08
amwaterhouse
GPL license added
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commitdiff
2005-06-02
amwaterhouse
Warn if URL not found
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commitdiff
2005-05-30
jprocter
more robust parsing for DBset/DBname|id1|id2 type ids
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commitdiff
next
git://source.jalview.org / jalview.git / history