Check for all gapped seqs
[jalview.git] / src / jalview / io /
2006-07-19 amwaterhouseUse Selection group to define sequence range to fetch...
2006-07-18 amwaterhouseomitHiddenColumns
2006-07-17 amwaterhouseTowards an auto dbref fetcher
2006-07-14 amwaterhouseJust fetch features for selected seqs
2006-07-13 amwaterhouseSelected DAS sources may differ from default
2006-07-12 amwaterhouseAppend start and end
2006-07-07 amwaterhouseDont discard label if different to H or E
2006-07-07 amwaterhouseMake 1.1 compatible
2006-07-07 amwaterhouseMove position of stopLoading for 1.5 people
2006-07-07 amwaterhousemake 1.1 compatible
2006-07-07 amwaterhouseDont write graph type twice
2006-07-07 amwaterhouseReplaced by AnnotationFile
2006-06-23 amwaterhouseUniprot may have several accession ids
2006-06-23 amwaterhouseParse HTML links from jalview features file
2006-06-22 amwaterhouseTakes AlignFrame as arg, to update progressbar
2006-06-22 amwaterhouseYe olde SequenceFeatureFetcher
2006-06-22 amwaterhouseRenamed to DBRefFetcher
2006-06-15 amwaterhouseUse spice-3d das1 source list for nowjalview/gui/DasSou...
2006-06-15 amwaterhouseFixed to trial registry at the moment
2006-06-15 amwaterhouseNot using AxisDasRegistry
2006-06-15 amwaterhouseCorrection - use start and end
2006-06-15 amwaterhouseDont add start and end for the moment
2006-06-15 amwaterhouseWrap alignment moved to alignFrame
2006-06-14 amwaterhouseFileloading progressbar
2006-06-14 amwaterhouseSequence checks for duplicate features
2006-06-09 amwaterhousesetAcceptAllFileFilter fixes bug on MacOSX
2006-06-09 amwaterhouseFunction not used
2006-06-09 amwaterhouseAnnotation/feature exporter
2006-06-08 jprocterIntroduced DbRefEntry to DasSourceCoordinateSystem...
2006-06-07 amwaterhouseWrap alignment added to preferences
2006-06-07 amwaterhouseNEW FILES
2006-05-18 jprocteradded future method comment
2006-05-17 jprocteradded unofficial support for concise output parsing...
2006-05-17 jprocterRefactored code for creating annotation objects from...
2006-05-15 amwaterhouseAll or nothing drawing display char
2006-05-12 amwaterhousepass viewport to fileloader, as we need to fireproperty...
2006-05-11 amwaterhouseSlightly smaller recent panel
2006-05-11 amwaterhouseRecently loaded files, urls, append sequences to Alignment
2006-05-10 amwaterhouseAnnotations must createSequenceMapping if seqRef not...
2006-04-10 amwaterhouseFixed protein desc bug
2006-04-07 amwaterhouseModellerOutput set in preferences
2006-04-04 amwaterhouseJalview2XML does not use static load
2006-04-04 amwaterhouseSpecify com.stevesoft.pat.Regex
2006-03-24 amwaterhouseTrim line
2006-03-24 amwaterhouseFeatures added to group Uniprot
2006-03-13 jprocterfixes bug 0013013 but reveals lack of a 'features retri...
2006-03-08 amwaterhouseAble to read resources from Zip file
2006-02-24 amwaterhouseP1 changed to N1
2006-02-24 amwaterhouseUse add feature instead of replacing existing values
2006-02-15 amwaterhouseSetThreshold replaces addGraphLine
2006-02-08 amwaterhouseReport invalid chars
2006-02-03 amwaterhouseJava 1.1 compatible
2006-02-03 amwaterhouseMany changes
2006-01-30 amwaterhouseNew files
2006-01-12 jprocterPIR file IO now preserves and parses Modeller style...
2005-12-16 jprocterTodo notes for feature issue: 0011711
2005-12-12 amwaterhouseChange title
2005-12-12 amwaterhouseDont bother with WSWUBlast for now
2005-12-08 amwaterhouseUnknownSequences.remove moved out of loop
2005-12-06 amwaterhouseafter merge
2005-11-18 jprocterFixed bug dragonfly.compbio.dundee.ac.uk/mantis/view...
2005-10-07 amwaterhouseQuick fix for reading sequence
2005-10-05 amwaterhouseSequence start end added for the time being
2005-09-30 amwaterhouseRemove redundancy in Eclipse
2005-09-22 amwaterhouseCreate instance of FormatAdapter
2005-09-22 amwaterhouseWrap alignment with annotations
2005-09-22 amwaterhouseCheck if filefilter is null
2005-09-15 amwaterhouseUse equalsIgnoreCase
2005-09-12 amwaterhouseAlways return true for directories
2005-09-01 amwaterhouseAdd header to file
2005-08-23 amwaterhouseSleep for longer
2005-08-23 amwaterhouseFinalize formats
2005-08-23 amwaterhouseRegex should not be static in file loader
2005-08-23 amwaterhouseIs fileChooser instanceof Basic
2005-08-22 jprocterfixed hanging on job finished bug.
2005-08-18 amwaterhouseReturn if UNIPROT_CACHE is null
2005-08-17 amwaterhouseNo basicDirectoryModel on the Mac
2005-08-17 amwaterhouseError reply is kept separate from file type
2005-08-17 amwaterhousePut basic file chooser test in try catch loop
2005-08-16 amwaterhouseRemove redundant imports
2005-08-15 amwaterhouseUse default fileChooser for now
2005-08-09 amwaterhouseCache.getDefault
2005-08-09 amwaterhouseTry/catch loading default icons
2005-08-03 amwaterhouse1 & -1
2005-08-03 amwaterhouseFileLoading removed from desktop
2005-07-29 amwaterhouseuse 1 & -1 if start/end not specified
2005-07-11 amwaterhousethis.installIcons
2005-07-06 amwaterhouseSequence to Uppercase before checksum
2005-06-30 amwaterhouseFormatting changes
2005-06-16 amwaterhousedont convert to uppercase
2005-06-15 amwaterhouseuse .jalview.uniprot.xml
2005-06-14 amwaterhousechange name of uniprot file
2005-06-14 jprocterArbitrary decision to keep friendly id name when readin...
2005-06-13 amwaterhouseuses paintrefresher
2005-06-10 amwaterhouseremove imports
2005-06-08 amwaterhouseif missing forward slash
2005-06-08 amwaterhouseFormatted source
2005-06-08 amwaterhouseGPL license added
2005-06-02 amwaterhouseWarn if URL not found
2005-05-30 jproctermore robust parsing for DBset/DBname|id1|id2 type ids
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