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JAL-629 example files from nf-core
[jalview.git]
/
src
/
jalview
/
renderer
/
2017-08-30
kiramt
JAL-2527 Wired up cached values to overview
tree
|
commitdiff
2017-08-30
kiramt
Merge remote-tracking branch 'origin/feature/2588'...
tree
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commitdiff
2017-08-30
kiramt
Merge branch 'feature/JAL-2664' into feature/JAL-2527
tree
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commitdiff
2017-08-29
kiramt
JAL-2664 Updates following review
feature/JAL-2664
tree
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commitdiff
2017-08-25
kiramt
JAL-2587 Removed duplicate events fired to progress bar
tree
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commitdiff
2017-08-25
kiramt
JAL-2587 Update overview progress bar while drawing...
tree
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commitdiff
2017-08-25
kiramt
JAL-2587 Progress bar sizing tweaks
tree
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commitdiff
2017-08-25
kiramt
JAL-2587 Made progress bar display before overview...
tree
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commitdiff
2017-08-21
gmungoc
Merge branch 'develop' into features/JAL-2609fastPaintW...
tree
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commitdiff
2017-08-21
Jim Procter
JAL-2588 don’t test char==gap until we know the shader...
feature/2588
tree
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commitdiff
2017-08-21
Jim Procter
JAL-2588 field on overview colour finder for default...
tree
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commitdiff
2017-08-21
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
features/JAL-2446NCList
tree
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commitdiff
2017-08-18
Jim Procter
Merge branch 'feature/2588' into merge/develop_feature...
tree
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commitdiff
2017-08-18
kiramt
JAL-2664 Adjusted colour of hidden cols/seqs
tree
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commitdiff
2017-08-18
kiramt
JAL-2664 Correct colouring for rows
tree
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commitdiff
2017-08-16
Jim Procter
JAL-2418 add GPL to main sources
tree
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commitdiff
2017-08-16
Jim Procter
JAL-2418 source formatting
tree
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commitdiff
2017-08-14
kiramt
JAL-2664 Initial change to drawing hidden regions in...
tree
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commitdiff
2017-08-08
kiramt
JAL-2587 Added progress bar to overview. Not fully...
tree
|
commitdiff
2017-08-01
gmungoc
JAL-2636 draw scale marks up to second last column
tree
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commitdiff
2017-07-24
gmungoc
spike branch updated from latest features/JAL-2446
tree
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commitdiff
2017-07-23
gmungoc
JAL-2481 JAL-2624 test for render feature below score...
tree
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commitdiff
2017-07-23
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-07-22
gmungoc
JAL-2624 check feature colour threshold when colouring...
tree
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commitdiff
2017-07-12
kiramt
JAL-2588 Check/fix show boxes settings + unit test...
tree
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commitdiff
2017-07-12
kiramt
JAL-2588 Added tests
tree
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commitdiff
2017-07-11
kiramt
JAL-2588 (and JAL-2610, JAL-2603) mid refactor
tree
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commitdiff
2017-07-05
Jim Procter
Merge branch 'develop' into features/JAL-2349_matrixvis
tree
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commitdiff
2017-06-30
gmungoc
JAL-2526 correct treatment of contact features only...
tree
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commitdiff
2017-06-27
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-06-22
gmungoc
JAL-2481 JAL-2593 JAL-2526 further optimisation of...
tree
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commitdiff
2017-06-15
gmungoc
Merge branch 'bug/JAL-2386groupConservationColouring...
tree
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commitdiff
2017-06-15
kiramt
Merge remote-tracking branch 'origin/develop' into...
bug/JAL-2591
tree
|
commitdiff
2017-06-11
Jim Procter
JAL-2349 scaling matrix column to annotation height
tree
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commitdiff
2017-06-11
Jim Procter
JAL-2349 min and max passed by renderer
tree
|
commitdiff
2017-06-09
gmungoc
JAL-2446 merged to spike branch
tree
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commitdiff
2017-06-09
Jim Procter
Merge branch 'develop' into features/JAL-2349_matrixvis
tree
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commitdiff
2017-06-09
gmungoc
JAL-2589 render colour scheme gap colour in overview
bug/JAL-2589gapColour
tree
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commitdiff
2017-06-09
gmungoc
JAL-2593 avoid redundant rendering of co-located features
tree
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commitdiff
2017-06-08
kiramt
JAL-2588 Consistent gap colour when in None colour...
tree
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commitdiff
2017-06-08
gmungoc
JAL-2386 JAL-2570 use ResidueShader copy constructor...
bug/JAL-2386groupConservationColouring
tree
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commitdiff
2017-06-08
kiramt
JAL-2591 Made redraw flag in OverviewRenderer volatile
tree
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commitdiff
2017-06-08
kiramt
JAL-2591 made redraw volatile
tree
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commitdiff
2017-06-07
kiramt
JAL-2591 Overview window update interrupts
tree
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commitdiff
2017-06-07
kiramt
JAL-2591 Increased granularity of overview panel update...
tree
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commitdiff
2017-06-01
gmungoc
JAL-2754 Sequence.findFeatures(fromCol, toCol)
features/JAL-2754findFeaturesByColumn
tree
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commitdiff
2017-05-31
gmungoc
JAL-2574 preparation for Sequence.findFeatures(col1...
tree
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commitdiff
2017-05-29
gmungoc
JAL-2526 Sequence.findPositions to get residue position...
tree
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commitdiff
2017-05-15
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-15
kiramt
JAL-2388 Add missed optimisation
tree
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commitdiff
2017-05-15
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-12
gmungoc
JAL-2480 efficient test for features present on sequence
tree
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commitdiff
2017-04-26
gmungoc
JAL-2490 findFeaturesAtRes with performant feature...
tree
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commitdiff
2017-04-26
kiramt
JAL-2388 Tidies and unit tests
tree
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commitdiff
2017-04-25
kiramt
JAL-2388 Reverted and re-did applet changes
tree
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commitdiff
2017-04-25
kiramt
JAL-2388 Tidies and other corrections so applet compiles
tree
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commitdiff
2017-04-25
kiramt
JAL-2388 Updated applet to show/hide hidden regions...
tree
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commitdiff
2017-04-24
kiramt
JAL-2388 Hidden cols separated from column selection...
tree
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commitdiff
2017-03-22
gmungoc
JAL-2446 optimised new method to find feature colour...
tree
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commitdiff
2017-03-22
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
|
commitdiff
2017-03-22
kiramt
Merge remote-tracking branch 'origin/develop' into
tree
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commitdiff
2017-03-21
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
features/JAL-653_JAL-1766_htslib_refseqsupport
tree
|
commitdiff
2017-03-21
gmungoc
JAL-2438 removed (non-functional) lastSeq, lastSequence...
tree
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commitdiff
2017-03-20
gmungoc
JAL-2446 FeatureStore with NCList - work in progress
tree
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commitdiff
2017-03-16
kiramt
JAL-2388 Applied ViewportRanges to code
tree
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commitdiff
2017-03-15
gmungoc
JAL-2438 handle null FeatureRenderer in FeatureColourFinder
tree
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commitdiff
2017-03-15
gmungoc
JAL-2438 refactored checks for 'no features displayed'
tree
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commitdiff
2017-03-15
gmungoc
JAL-2438 clarify code and javadoc, reinstate updateFeat...
tree
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commitdiff
2017-03-14
gmungoc
JAL-2438 unit test, fixes, Javadoc updates
tree
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commitdiff
2017-03-14
gmungoc
JAL-2438 Javadoc updates
tree
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commitdiff
2017-03-14
gmungoc
JAL-2438 comment/Javadoc tidies
tree
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commitdiff
2017-03-13
gmungoc
JAL-2438 corrected handling of default colour
tree
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commitdiff
2017-03-13
gmungoc
JAL-2438 FeatureColourFinder refactored from FeatureRen...
tree
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commitdiff
2017-02-10
Jim Procter
Merge branch 'develop' into spike/matrix_annot
tree
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commitdiff
2017-02-10
gmungoc
JAL-2371 small move of code, typo correction
tree
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commitdiff
2017-01-31
gmungoc
JAL-2371 rename global/viewportColourScheme to residueS...
tree
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commitdiff
2017-01-31
gmungoc
JAL-2385 more tests/bug fixes mostly for gui.SliderPane...
tree
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commitdiff
2017-01-27
gmungoc
JAL-2371 CollectionColourScheme renamed ResidueShader...
tree
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commitdiff
2017-01-23
Jim Procter
JAL-2349 colour shade computation refactored to annotat...
tree
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commitdiff
2017-01-06
gmungoc
JAL-2371 correct Clustal, Blosum, PID colouring of...
tree
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commitdiff
2017-01-04
gmungoc
JAL-2371 CollectionColourScheme wraps ColourSchemeI
tree
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commitdiff
2016-12-12
Jim Procter
JAL-2349 fixed rendering method and switched to using...
tree
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commitdiff
2016-12-05
Jim Procter
JAL-2349 contact map interface todo
tree
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commitdiff
2016-12-05
Jim Procter
JAL-2349 tidying
tree
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commitdiff
2016-12-04
Jim Procter
JAL-2348 make debug message reporting renderer used...
tree
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commitdiff
2016-12-04
Jim Procter
JAL-2349 contact renderer prototype (that doesn’t hang!)
tree
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commitdiff
2016-12-04
Jim Procter
JAL-2348 JAL-2349 refactored contact map renderer and...
tree
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commitdiff
2016-12-04
Jim Procter
JAL-2348 contact map renderer refactored from hacked...
tree
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commitdiff
2016-12-04
Jim Procter
JAL-2348 row renderer factory interface
tree
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commitdiff
2016-12-04
Jim Procter
JAL-2348 row renderer interface
tree
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commitdiff
2016-12-02
Jim Procter
basic hack to get (almost) equal height density plot
tree
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commitdiff
2016-11-21
gmungoc
Merge branch 'develop' into bug/JAL-2323disulfideOverview
tree
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commitdiff
2016-11-17
gmungoc
JAL-2323 revert to thread-safe iteration over array...
tree
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commitdiff
2016-11-17
gmungoc
JAL-98 ProfilesI container for profiles for columns
tree
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commitdiff
2016-11-17
gmungoc
JAL-2327 disulfide bond abstracted to SequenceFeature...
tree
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commitdiff
2016-11-16
gmungoc
JAL-2323 render disulfide bond correctly on overview...
tree
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commitdiff
2016-11-02
gmungoc
JAL-98 ProfileI interface for Profile
tree
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commitdiff
2016-11-02
gmungoc
JAL-98 Profile and ResidueCount moved from analysis...
tree
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commitdiff
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
tree
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commitdiff
2016-10-06
gmungoc
Merge branch 'develop' into bug/JAL-98consensusMemory
tree
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commitdiff
next