Merge branch 'bug/JAL-2920_uniprotvariantfeature' into releases/Release_2_10_4_Branch
[jalview.git] / src / jalview / viewmodel / AlignmentViewport.java
2018-02-27 Jim ProcterMerge branch 'feature/JAL-2759' into merge/JAL-2759_2104
2018-02-09 gmungocJAL-2666 fix failure to scroll split alignment of height 1
2018-01-19 kiramtJAL-2759 Changes to getVisibleSequenceStrings after...
2018-01-16 kiramtJAL-2759 Moved alignment annotation code out of HiddenC...
2018-01-15 kiramtJAL-2759 Rename findColumnPosition and adjustForHiddenC...
2017-10-26 Jim ProcterJAL-2488 patch causes of NPE during testStoreAndRecover...
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2727closeAllFreeMemory' into...
2017-10-11 kiramtJAL-2742 removed unused getViewAsCigars
2017-09-14 gmungocJAL-2727 null more fields in AlignmentViewport.dispose...
2017-09-13 gmungocJAL-2727 null additional references on close
2017-09-12 gmungocRevert "JAL-2727 null hconsensus, "
2017-09-12 gmungocJAL-2727 null hconsensus,
2017-09-12 gmungocJAL-2727 ensure ViewportRanges (and gapcounts) are...
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-08-08 gmungocJAL-2560 alternative fix (reinstate lost line of code)
2017-08-08 gmungocJAL-2649 JAL-2650 wait for Conservation calc to complet...
2017-07-06 gmungocJAL-147 unit test for hide/show sequences update Viewpo...
2017-07-04 gmungocJAL-147 revised update of startSeq, endSeq on unhide...
2017-07-04 gmungocJAL-147 corrected update of ViewportRanges for show...
2017-07-04 gmungocJAL-147 update ViewportRanges height after show/hide...
2017-07-03 gmungocMerge branch 'develop' into bug/JAL-147scrollWrappedView
2017-06-30 gmungocJAL-2602 pulled up identical methods to base class
2017-06-29 gmungocJAL-147 improved wrapped scrolling (including Overview...
2017-06-06 kiramtJAL-2591 Removed getHiddenRegions()==null checks which...
2017-05-24 kiramtJAL-2034 Added isDefined flag to SequenceGroup
2017-05-15 Jim ProcterJAL-2371 create a default ResidueShader when constructi...
2017-05-12 Jim ProcterMerge branch 'features/JAL-2435splitScreenFont' into...
2017-05-05 gmungocMerge branch 'develop' into features/JAL-2435splitScree...
2017-05-05 kiramtMerge remote-tracking branch
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into
2017-05-03 Jim ProcterJAL-1933 JAL-2501 i18n for all auto calculated descriptions features/JAL-2432_annotbypercent
2017-04-27 Jim ProcterJAL-1933 consensus calculation doesn’t depend on occupa...
2017-04-27 Jim ProcterJAL-1933 only create and add occupancy row to alignment...
2017-04-27 Jim ProcterJAL-1933 occupancy row has a space below it for counts
2017-04-24 kiramtMerge remote-tracking branch
2017-04-24 kiramtJAL-2388 Finished split of hidden columns and selected...
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection...
2017-04-19 kiramtMerge remote-tracking branch 'origin/develop' into
2017-04-03 gmungocMerge branch 'develop' into features/JAL-2435splitScree...
2017-03-31 gmungocMerge branch 'develop' into bug/JAL-2431splitFrameNewView bug/JAL-2431splitFrameNewView
2017-03-31 gmungocJAL-2435 slightly more sensible behaviour changing...
2017-03-22 kiramtMerge remote-tracking branch 'origin/develop' into
2017-03-21 kiramtJAL-2388 Made ViewportRanges final
2017-03-21 Jim ProcterMerge branch 'features/JAL-2388OverviewWindow' into...
2017-03-16 kiramtJAL-2388 Applied ViewportRanges to code
2017-03-16 kiramtJAL-2388 Renamed viewport position props to viewport...
2017-03-15 gmungocJAL-2431 show cDNA consensus after New View in split...
2017-03-15 kiramtJAL-2388 Unit tests and tidies
2017-03-01 kiramtJAL-2388 Reverted to previous
2017-03-01 gmungocMerge branch 'features/JAL-2295setChimeraAttributes...
2017-03-01 kiramtJAL-2388 Preliminary refactor check-in, does not compile
2017-02-28 kiramtJAL-2388 First move of endRes etc out of AlignmentViewp...
2017-02-27 kiramtJAL-2388 Make startRes,startSeq,endRes,endSeq private...
2017-02-21 kiramtMerge branch 'develop' into features/JAL-2388OverviewWindow
2017-02-10 gmungocJAL-2371 small move of code, typo correction
2017-02-09 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-02-09 kiramtJAL-2388 Initial refactor of OverviewPanel
2017-02-09 gmungocJAL-2405 set initial selection group alignment context
2017-02-08 gmungocJAL-2405 set context on selection group for tailored...
2017-01-31 gmungocJAL-2371 commented code removed only
2017-01-31 gmungocJAL-2371 rename global/viewportColourScheme to residueS...
2017-01-31 gmungocJAL-2385 more tests/bug fixes mostly for gui.SliderPane...
2017-01-27 gmungocJAL-2371 CollectionColourScheme renamed ResidueShader...
2017-01-27 gmungocJAL-2360 JAL-2371 updates from review CR-JAL-1
2017-01-23 gmungocJAL-2386 unit tests for change colour (and minor refact...
2017-01-23 gmungocJAL-2386 simplify changeColour (doesn't change colour...
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI
2016-12-20 gmungocJAL-2360 ColourSchemes holds configured schemes, AlignF...
2016-12-04 Jim ProcterJAL-1933 switch from gap count to occupancy
2016-12-02 gmungocJAL-1933 gap value as description; minor formatting
2016-12-01 Jim ProcterJAL-1933 basic hack to get gap counts shown as an annot...
2016-11-22 Jim ProcterMerge branch 'features/JAL-1738_JAL-345_selectionfromhi...
2016-11-17 gmungocJAL-98 ProfilesI container for profiles for columns
2016-11-02 gmungocJAL-98 JAL-1854 encapsulate 'magic number' threshold...
2016-11-02 gmungocJAL-98 ProfileI interface for Profile
2016-11-02 gmungocJAL-98 Profile and ResidueCount moved from analysis...
2016-10-28 Jim ProcterJAL-966 SearchResultsI now on viewmodels.AlignmentViewp...
2016-10-28 Jim ProcterJAL-966 JAL-1738 JAL-345 interfaces for SearchResults...
2016-10-26 gmungocMerge branch 'bug/JAL-98consensusMemory' into develop
2016-10-26 gmungocJAL-98 null reference to globalColourScheme as it has...
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch'
2016-10-24 gmungocJAL-2283 set 'by conservation' correctly when changing...
2016-10-06 gmungocMerge branch 'develop' into bug/JAL-98consensusMemory
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 Jim ProcterJAL-2189 source formatting
2016-10-03 gmungocJAL-98 use Profile to store consensus, ResidueCount...
2016-09-22 gmungocJAL-1421 typed ResidueProperties.propHash; JAL-2176...
2016-09-22 gmungocJAL-2216 new dispose() method to null references
2016-09-20 gmungocJAL-1306 calculate Quality also when Conservation not...
2016-09-19 gmungocJAL-2172 test and code updates for readonly selection...
2016-09-07 Jim ProcterMerge branch 'develop' into bug/JAL-1803_JAL-2157
2016-09-06 gmungocJAL-2147 additional test coverage for findMappingsForSe...
2016-09-01 Jim ProcterJAL-2034 check context of selection group to catch...
2016-08-31 Jim ProcterJAL-2034 moved ‘isDefinedGroup’ flag to a test method...
2016-07-20 gmungocJAL-2023 stronger check for whether to start cdna consensus
2016-07-14 Jim Procterfix for JAL-2147
2016-06-27 gmungocJAL-2133 refactored duplicated code to AlignmentViewport
2016-06-22 gmungocJAL-1982 defensive checks for null annotations array
2016-06-02 tcofoegbuJAL-1944 java doc update and minor house keeping
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