| 2018-02-27 |
Jim Procter | Merge branch 'feature/JAL-2759' into merge/JAL-2759_2104 |
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| 2018-02-09 |
gmungoc | JAL-2666 fix failure to scroll split alignment of height 1 |
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| 2018-01-19 |
kiramt | JAL-2759 Changes to getVisibleSequenceStrings after... |
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| 2018-01-16 |
kiramt | JAL-2759 Moved alignment annotation code out of HiddenC... |
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| 2018-01-15 |
kiramt | JAL-2759 Rename findColumnPosition and adjustForHiddenC... |
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| 2017-10-26 |
Jim Procter | JAL-2488 patch causes of NPE during testStoreAndRecover... |
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| 2017-10-25 |
Jim Procter | Merge branch 'bug/JAL-2727closeAllFreeMemory' into... |
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| 2017-10-11 |
kiramt | JAL-2742 removed unused getViewAsCigars |
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| 2017-09-14 |
gmungoc | JAL-2727 null more fields in AlignmentViewport.dispose... |
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| 2017-09-13 |
gmungoc | JAL-2727 null additional references on close |
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| 2017-09-12 |
gmungoc | Revert "JAL-2727 null hconsensus, " |
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| 2017-09-12 |
gmungoc | JAL-2727 null hconsensus, |
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| 2017-09-12 |
gmungoc | JAL-2727 ensure ViewportRanges (and gapcounts) are... |
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| 2017-08-16 |
Jim Procter | JAL-2418 source formatting |
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| 2017-08-08 |
gmungoc | JAL-2560 alternative fix (reinstate lost line of code) |
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| 2017-08-08 |
gmungoc | JAL-2649 JAL-2650 wait for Conservation calc to complet... |
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| 2017-07-06 |
gmungoc | JAL-147 unit test for hide/show sequences update Viewpo... |
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| 2017-07-04 |
gmungoc | JAL-147 revised update of startSeq, endSeq on unhide... |
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| 2017-07-04 |
gmungoc | JAL-147 corrected update of ViewportRanges for show... |
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| 2017-07-04 |
gmungoc | JAL-147 update ViewportRanges height after show/hide... |
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| 2017-07-03 |
gmungoc | Merge branch 'develop' into bug/JAL-147scrollWrappedView |
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| 2017-06-30 |
gmungoc | JAL-2602 pulled up identical methods to base class |
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| 2017-06-29 |
gmungoc | JAL-147 improved wrapped scrolling (including Overview... |
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| 2017-06-06 |
kiramt | JAL-2591 Removed getHiddenRegions()==null checks which... |
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| 2017-05-24 |
kiramt | JAL-2034 Added isDefined flag to SequenceGroup |
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| 2017-05-15 |
Jim Procter | JAL-2371 create a default ResidueShader when constructi... |
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| 2017-05-12 |
Jim Procter | Merge branch 'features/JAL-2435splitScreenFont' into... |
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| 2017-05-05 |
gmungoc | Merge branch 'develop' into features/JAL-2435splitScree... |
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| 2017-05-05 |
kiramt | Merge remote-tracking branch |
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| 2017-05-05 |
kiramt | Merge remote-tracking branch 'origin/develop' into |
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| 2017-05-03 |
Jim Procter | JAL-1933 JAL-2501 i18n for all auto calculated descriptions features/JAL-2432_annotbypercent |
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| 2017-04-27 |
Jim Procter | JAL-1933 consensus calculation doesn’t depend on occupa... |
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| 2017-04-27 |
Jim Procter | JAL-1933 only create and add occupancy row to alignment... |
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| 2017-04-27 |
Jim Procter | JAL-1933 occupancy row has a space below it for counts |
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| 2017-04-24 |
kiramt | Merge remote-tracking branch |
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| 2017-04-24 |
kiramt | JAL-2388 Finished split of hidden columns and selected... |
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| 2017-04-24 |
kiramt | JAL-2388 Hidden cols separated from column selection... |
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| 2017-04-19 |
kiramt | Merge remote-tracking branch 'origin/develop' into |
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| 2017-04-03 |
gmungoc | Merge branch 'develop' into features/JAL-2435splitScree... |
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| 2017-03-31 |
gmungoc | Merge branch 'develop' into bug/JAL-2431splitFrameNewView bug/JAL-2431splitFrameNewView |
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| 2017-03-31 |
gmungoc | JAL-2435 slightly more sensible behaviour changing... |
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| 2017-03-22 |
kiramt | Merge remote-tracking branch 'origin/develop' into |
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| 2017-03-21 |
kiramt | JAL-2388 Made ViewportRanges final |
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| 2017-03-21 |
Jim Procter | Merge branch 'features/JAL-2388OverviewWindow' into... |
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| 2017-03-16 |
kiramt | JAL-2388 Applied ViewportRanges to code |
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| 2017-03-16 |
kiramt | JAL-2388 Renamed viewport position props to viewport... |
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| 2017-03-15 |
gmungoc | JAL-2431 show cDNA consensus after New View in split... |
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| 2017-03-15 |
kiramt | JAL-2388 Unit tests and tidies |
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| 2017-03-01 |
kiramt | JAL-2388 Reverted to previous |
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| 2017-03-01 |
gmungoc | Merge branch 'features/JAL-2295setChimeraAttributes... |
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| 2017-03-01 |
kiramt | JAL-2388 Preliminary refactor check-in, does not compile |
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| 2017-02-28 |
kiramt | JAL-2388 First move of endRes etc out of AlignmentViewp... |
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| 2017-02-27 |
kiramt | JAL-2388 Make startRes,startSeq,endRes,endSeq private... |
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| 2017-02-21 |
kiramt | Merge branch 'develop' into features/JAL-2388OverviewWindow |
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| 2017-02-10 |
gmungoc | JAL-2371 small move of code, typo correction |
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| 2017-02-09 |
kiramt | Merge remote-tracking branch 'origin/develop' into... |
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| 2017-02-09 |
kiramt | JAL-2388 Initial refactor of OverviewPanel |
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| 2017-02-09 |
gmungoc | JAL-2405 set initial selection group alignment context |
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| 2017-02-08 |
gmungoc | JAL-2405 set context on selection group for tailored... |
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| 2017-01-31 |
gmungoc | JAL-2371 commented code removed only |
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| 2017-01-31 |
gmungoc | JAL-2371 rename global/viewportColourScheme to residueS... |
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| 2017-01-31 |
gmungoc | JAL-2385 more tests/bug fixes mostly for gui.SliderPane... |
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| 2017-01-27 |
gmungoc | JAL-2371 CollectionColourScheme renamed ResidueShader... |
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| 2017-01-27 |
gmungoc | JAL-2360 JAL-2371 updates from review CR-JAL-1 |
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| 2017-01-23 |
gmungoc | JAL-2386 unit tests for change colour (and minor refact... |
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| 2017-01-23 |
gmungoc | JAL-2386 simplify changeColour (doesn't change colour... |
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| 2017-01-04 |
gmungoc | JAL-2371 CollectionColourScheme wraps ColourSchemeI |
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| 2016-12-20 |
gmungoc | JAL-2360 ColourSchemes holds configured schemes, AlignF... |
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| 2016-12-04 |
Jim Procter | JAL-1933 switch from gap count to occupancy |
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| 2016-12-02 |
gmungoc | JAL-1933 gap value as description; minor formatting |
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| 2016-12-01 |
Jim Procter | JAL-1933 basic hack to get gap counts shown as an annot... |
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| 2016-11-22 |
Jim Procter | Merge branch 'features/JAL-1738_JAL-345_selectionfromhi... |
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| 2016-11-17 |
gmungoc | JAL-98 ProfilesI container for profiles for columns |
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| 2016-11-02 |
gmungoc | JAL-98 JAL-1854 encapsulate 'magic number' threshold... |
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| 2016-11-02 |
gmungoc | JAL-98 ProfileI interface for Profile |
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| 2016-11-02 |
gmungoc | JAL-98 Profile and ResidueCount moved from analysis... |
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| 2016-10-28 |
Jim Procter | JAL-966 SearchResultsI now on viewmodels.AlignmentViewp... |
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| 2016-10-28 |
Jim Procter | JAL-966 JAL-1738 JAL-345 interfaces for SearchResults... |
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| 2016-10-26 |
gmungoc | Merge branch 'bug/JAL-98consensusMemory' into develop |
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| 2016-10-26 |
gmungoc | JAL-98 null reference to globalColourScheme as it has... |
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| 2016-10-25 |
Jim Procter | JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch |
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| 2016-10-24 |
Jim Procter | Merge branch 'releases/Release_2_10_0_Branch' |
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| 2016-10-24 |
gmungoc | JAL-2283 set 'by conservation' correctly when changing... |
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| 2016-10-06 |
gmungoc | Merge branch 'develop' into bug/JAL-98consensusMemory |
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| 2016-10-06 |
Jim Procter | JAL-2089 Merge branch releases/Release_2_10_Branch... |
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| 2016-10-05 |
Jim Procter | JAL-2189 source formatting |
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| 2016-10-03 |
gmungoc | JAL-98 use Profile to store consensus, ResidueCount... |
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| 2016-09-22 |
gmungoc | JAL-1421 typed ResidueProperties.propHash; JAL-2176... |
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| 2016-09-22 |
gmungoc | JAL-2216 new dispose() method to null references |
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| 2016-09-20 |
gmungoc | JAL-1306 calculate Quality also when Conservation not... |
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| 2016-09-19 |
gmungoc | JAL-2172 test and code updates for readonly selection... |
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| 2016-09-07 |
Jim Procter | Merge branch 'develop' into bug/JAL-1803_JAL-2157 |
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| 2016-09-06 |
gmungoc | JAL-2147 additional test coverage for findMappingsForSe... |
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| 2016-09-01 |
Jim Procter | JAL-2034 check context of selection group to catch... |
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| 2016-08-31 |
Jim Procter | JAL-2034 moved ‘isDefinedGroup’ flag to a test method... |
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| 2016-07-20 |
gmungoc | JAL-2023 stronger check for whether to start cdna consensus |
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| 2016-07-14 |
Jim Procter | fix for JAL-2147 |
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| 2016-06-27 |
gmungoc | JAL-2133 refactored duplicated code to AlignmentViewport |
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| 2016-06-22 |
gmungoc | JAL-1982 defensive checks for null annotations array |
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| 2016-06-02 |
tcofoegbu | JAL-1944 java doc update and minor house keeping |
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