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JAL-2541 it works!! it works!!!
[jalview.git]
/
src
/
jalview
/
viewmodel
/
AlignmentViewport.java
2017-08-16
Jim Procter
JAL-2418 source formatting
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2017-08-08
gmungoc
JAL-2560 alternative fix (reinstate lost line of code)
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2017-08-08
gmungoc
JAL-2649 JAL-2650 wait for Conservation calc to complet...
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2017-07-06
gmungoc
JAL-147 unit test for hide/show sequences update Viewpo...
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2017-07-04
gmungoc
JAL-147 revised update of startSeq, endSeq on unhide...
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2017-07-04
gmungoc
JAL-147 corrected update of ViewportRanges for show...
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2017-07-04
gmungoc
JAL-147 update ViewportRanges height after show/hide...
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2017-07-03
gmungoc
Merge branch 'develop' into bug/JAL-147scrollWrappedView
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2017-06-30
gmungoc
JAL-2602 pulled up identical methods to base class
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2017-06-29
gmungoc
JAL-147 improved wrapped scrolling (including Overview...
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2017-06-06
kiramt
JAL-2591 Removed getHiddenRegions()==null checks which...
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2017-05-24
kiramt
JAL-2034 Added isDefined flag to SequenceGroup
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2017-05-15
Jim Procter
JAL-2371 create a default ResidueShader when constructi...
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2017-05-12
Jim Procter
Merge branch 'features/JAL-2435splitScreenFont' into...
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2017-05-05
gmungoc
Merge branch 'develop' into features/JAL-2435splitScree...
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2017-05-05
kiramt
Merge remote-tracking branch
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2017-05-05
kiramt
Merge remote-tracking branch 'origin/develop' into
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2017-05-03
Jim Procter
JAL-1933 JAL-2501 i18n for all auto calculated descriptions
features/JAL-2432_annotbypercent
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2017-04-27
Jim Procter
JAL-1933 consensus calculation doesn’t depend on occupa...
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2017-04-27
Jim Procter
JAL-1933 only create and add occupancy row to alignment...
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2017-04-27
Jim Procter
JAL-1933 occupancy row has a space below it for counts
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2017-04-24
kiramt
Merge remote-tracking branch
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2017-04-24
kiramt
JAL-2388 Finished split of hidden columns and selected...
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2017-04-24
kiramt
JAL-2388 Hidden cols separated from column selection...
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2017-04-19
kiramt
Merge remote-tracking branch 'origin/develop' into
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2017-04-03
gmungoc
Merge branch 'develop' into features/JAL-2435splitScree...
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2017-03-31
gmungoc
Merge branch 'develop' into bug/JAL-2431splitFrameNewView
bug/JAL-2431splitFrameNewView
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2017-03-31
gmungoc
JAL-2435 slightly more sensible behaviour changing...
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2017-03-22
kiramt
Merge remote-tracking branch 'origin/develop' into
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2017-03-21
kiramt
JAL-2388 Made ViewportRanges final
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2017-03-21
Jim Procter
Merge branch 'features/JAL-2388OverviewWindow' into...
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2017-03-16
kiramt
JAL-2388 Applied ViewportRanges to code
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2017-03-16
kiramt
JAL-2388 Renamed viewport position props to viewport...
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2017-03-15
gmungoc
JAL-2431 show cDNA consensus after New View in split...
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2017-03-15
kiramt
JAL-2388 Unit tests and tidies
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2017-03-01
kiramt
JAL-2388 Reverted to previous
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2017-03-01
gmungoc
Merge branch 'features/JAL-2295setChimeraAttributes...
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2017-03-01
kiramt
JAL-2388 Preliminary refactor check-in, does not compile
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2017-02-28
kiramt
JAL-2388 First move of endRes etc out of AlignmentViewp...
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2017-02-27
kiramt
JAL-2388 Make startRes,startSeq,endRes,endSeq private...
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2017-02-21
kiramt
Merge branch 'develop' into features/JAL-2388OverviewWindow
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2017-02-10
gmungoc
JAL-2371 small move of code, typo correction
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2017-02-09
kiramt
Merge remote-tracking branch 'origin/develop' into...
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2017-02-09
kiramt
JAL-2388 Initial refactor of OverviewPanel
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2017-02-09
gmungoc
JAL-2405 set initial selection group alignment context
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2017-02-08
gmungoc
JAL-2405 set context on selection group for tailored...
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2017-01-31
gmungoc
JAL-2371 commented code removed only
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2017-01-31
gmungoc
JAL-2371 rename global/viewportColourScheme to residueS...
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2017-01-31
gmungoc
JAL-2385 more tests/bug fixes mostly for gui.SliderPane...
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2017-01-27
gmungoc
JAL-2371 CollectionColourScheme renamed ResidueShader...
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2017-01-27
gmungoc
JAL-2360 JAL-2371 updates from review CR-JAL-1
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2017-01-23
gmungoc
JAL-2386 unit tests for change colour (and minor refact...
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2017-01-23
gmungoc
JAL-2386 simplify changeColour (doesn't change colour...
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2017-01-04
gmungoc
JAL-2371 CollectionColourScheme wraps ColourSchemeI
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2016-12-20
gmungoc
JAL-2360 ColourSchemes holds configured schemes, AlignF...
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2016-12-04
Jim Procter
JAL-1933 switch from gap count to occupancy
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2016-12-02
gmungoc
JAL-1933 gap value as description; minor formatting
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2016-12-01
Jim Procter
JAL-1933 basic hack to get gap counts shown as an annot...
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2016-11-22
Jim Procter
Merge branch 'features/JAL-1738_JAL-345_selectionfromhi...
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2016-11-17
gmungoc
JAL-98 ProfilesI container for profiles for columns
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2016-11-02
gmungoc
JAL-98 JAL-1854 encapsulate 'magic number' threshold...
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2016-11-02
gmungoc
JAL-98 ProfileI interface for Profile
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2016-11-02
gmungoc
JAL-98 Profile and ResidueCount moved from analysis...
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2016-10-28
Jim Procter
JAL-966 SearchResultsI now on viewmodels.AlignmentViewp...
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2016-10-28
Jim Procter
JAL-966 JAL-1738 JAL-345 interfaces for SearchResults...
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2016-10-26
gmungoc
Merge branch 'bug/JAL-98consensusMemory' into develop
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2016-10-26
gmungoc
JAL-98 null reference to globalColourScheme as it has...
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2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
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2016-10-24
Jim Procter
Merge branch 'releases/Release_2_10_0_Branch'
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2016-10-24
gmungoc
JAL-2283 set 'by conservation' correctly when changing...
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2016-10-06
gmungoc
Merge branch 'develop' into bug/JAL-98consensusMemory
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2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
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2016-10-05
Jim Procter
JAL-2189 source formatting
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2016-10-03
gmungoc
JAL-98 use Profile to store consensus, ResidueCount...
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2016-09-22
gmungoc
JAL-1421 typed ResidueProperties.propHash; JAL-2176...
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2016-09-22
gmungoc
JAL-2216 new dispose() method to null references
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2016-09-20
gmungoc
JAL-1306 calculate Quality also when Conservation not...
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2016-09-19
gmungoc
JAL-2172 test and code updates for readonly selection...
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2016-09-07
Jim Procter
Merge branch 'develop' into bug/JAL-1803_JAL-2157
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2016-09-06
gmungoc
JAL-2147 additional test coverage for findMappingsForSe...
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2016-09-01
Jim Procter
JAL-2034 check context of selection group to catch...
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2016-08-31
Jim Procter
JAL-2034 moved ‘isDefinedGroup’ flag to a test method...
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2016-07-20
gmungoc
JAL-2023 stronger check for whether to start cdna consensus
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2016-07-14
Jim Procter
fix for JAL-2147
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2016-06-27
gmungoc
JAL-2133 refactored duplicated code to AlignmentViewport
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2016-06-22
gmungoc
JAL-1982 defensive checks for null annotations array
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2016-06-02
tcofoegbu
JAL-1944 java doc update and minor house keeping
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2016-06-01
tcofoegbu
JAL-1944 updated bugfix implementation
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2016-05-31
tcofoegbu
JAL-1944 fix for visible seqs sometimes been replaced...
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2016-05-27
gmungoc
JAL-1989 tightened up use of flag for 'column selection...
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2016-04-27
Jim Procter
JAL-2085 JAL-2086 fix hiddenRepSequence and new referen...
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2016-04-04
Jim Procter
JAL-969 refactor columnselection operation (during...
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2016-03-07
gmungoc
JAL-2023 CDS sequences added to / share alignment dataset
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2016-03-01
gmungoc
Merge branch 'develop' into features/JAL-653_JAL-1766_h...
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2016-02-26
tcofoegbu
JAL-1994 updated implementation for broken tests
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2016-02-26
tcofoegbu
JAL-1994 fix for broken tests
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2016-02-25
gmungoc
Merge branch 'develop' into features/JAL-653_JAL-1766_h...
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2016-02-22
tcofoegbu
JAL-1944 bugfix for error when exporting hidden sequenc...
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2016-02-22
gmungoc
JAL-1705 first pass at applying preset feature colourin...
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2016-01-28
gmungoc
Merge branch 'develop' into JAL-1705_trialMerge
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