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Merge branch 'develop' into bug/JAL-2314
[jalview.git]
/
src
/
jalview
/
viewmodel
/
AlignmentViewport.java
2017-03-31
gmungoc
Merge branch 'develop' into bug/JAL-2431splitFrameNewView
bug/JAL-2431splitFrameNewView
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2017-03-21
Jim Procter
Merge branch 'features/JAL-2388OverviewWindow' into...
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2017-03-16
kiramt
JAL-2388 Applied ViewportRanges to code
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2017-03-16
kiramt
JAL-2388 Renamed viewport position props to viewport...
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2017-03-15
gmungoc
JAL-2431 show cDNA consensus after New View in split...
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2017-03-15
kiramt
JAL-2388 Unit tests and tidies
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2017-03-01
kiramt
JAL-2388 Reverted to previous
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2017-03-01
gmungoc
Merge branch 'features/JAL-2295setChimeraAttributes...
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2017-03-01
kiramt
JAL-2388 Preliminary refactor check-in, does not compile
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2017-02-28
kiramt
JAL-2388 First move of endRes etc out of AlignmentViewp...
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2017-02-27
kiramt
JAL-2388 Make startRes,startSeq,endRes,endSeq private...
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2017-02-21
kiramt
Merge branch 'develop' into features/JAL-2388OverviewWindow
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2017-02-10
gmungoc
JAL-2371 small move of code, typo correction
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2017-02-09
kiramt
Merge remote-tracking branch 'origin/develop' into...
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2017-02-09
kiramt
JAL-2388 Initial refactor of OverviewPanel
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2017-02-09
gmungoc
JAL-2405 set initial selection group alignment context
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2017-02-08
gmungoc
JAL-2405 set context on selection group for tailored...
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2017-01-31
gmungoc
JAL-2371 commented code removed only
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2017-01-31
gmungoc
JAL-2371 rename global/viewportColourScheme to residueS...
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2017-01-31
gmungoc
JAL-2385 more tests/bug fixes mostly for gui.SliderPane...
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2017-01-27
gmungoc
JAL-2371 CollectionColourScheme renamed ResidueShader...
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2017-01-27
gmungoc
JAL-2360 JAL-2371 updates from review CR-JAL-1
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2017-01-23
gmungoc
JAL-2386 unit tests for change colour (and minor refact...
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2017-01-23
gmungoc
JAL-2386 simplify changeColour (doesn't change colour...
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2017-01-04
gmungoc
JAL-2371 CollectionColourScheme wraps ColourSchemeI
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2016-12-20
gmungoc
JAL-2360 ColourSchemes holds configured schemes, AlignF...
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2016-12-04
Jim Procter
JAL-1933 switch from gap count to occupancy
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2016-12-02
gmungoc
JAL-1933 gap value as description; minor formatting
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2016-12-01
Jim Procter
JAL-1933 basic hack to get gap counts shown as an annot...
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2016-11-22
Jim Procter
Merge branch 'features/JAL-1738_JAL-345_selectionfromhi...
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2016-11-17
gmungoc
JAL-98 ProfilesI container for profiles for columns
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2016-11-02
gmungoc
JAL-98 JAL-1854 encapsulate 'magic number' threshold...
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2016-11-02
gmungoc
JAL-98 ProfileI interface for Profile
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2016-11-02
gmungoc
JAL-98 Profile and ResidueCount moved from analysis...
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2016-10-28
Jim Procter
JAL-966 SearchResultsI now on viewmodels.AlignmentViewp...
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2016-10-28
Jim Procter
JAL-966 JAL-1738 JAL-345 interfaces for SearchResults...
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2016-10-26
gmungoc
Merge branch 'bug/JAL-98consensusMemory' into develop
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2016-10-26
gmungoc
JAL-98 null reference to globalColourScheme as it has...
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2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
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2016-10-24
Jim Procter
Merge branch 'releases/Release_2_10_0_Branch'
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2016-10-24
gmungoc
JAL-2283 set 'by conservation' correctly when changing...
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2016-10-06
gmungoc
Merge branch 'develop' into bug/JAL-98consensusMemory
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2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
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2016-10-05
Jim Procter
JAL-2189 source formatting
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2016-10-03
gmungoc
JAL-98 use Profile to store consensus, ResidueCount...
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2016-09-22
gmungoc
JAL-1421 typed ResidueProperties.propHash; JAL-2176...
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2016-09-22
gmungoc
JAL-2216 new dispose() method to null references
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2016-09-20
gmungoc
JAL-1306 calculate Quality also when Conservation not...
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2016-09-19
gmungoc
JAL-2172 test and code updates for readonly selection...
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2016-09-07
Jim Procter
Merge branch 'develop' into bug/JAL-1803_JAL-2157
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2016-09-06
gmungoc
JAL-2147 additional test coverage for findMappingsForSe...
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2016-09-01
Jim Procter
JAL-2034 check context of selection group to catch...
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2016-08-31
Jim Procter
JAL-2034 moved ‘isDefinedGroup’ flag to a test method...
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2016-07-20
gmungoc
JAL-2023 stronger check for whether to start cdna consensus
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2016-07-14
Jim Procter
fix for JAL-2147
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2016-06-27
gmungoc
JAL-2133 refactored duplicated code to AlignmentViewport
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2016-06-22
gmungoc
JAL-1982 defensive checks for null annotations array
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2016-06-02
tcofoegbu
JAL-1944 java doc update and minor house keeping
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2016-06-01
tcofoegbu
JAL-1944 updated bugfix implementation
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2016-05-31
tcofoegbu
JAL-1944 fix for visible seqs sometimes been replaced...
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2016-05-27
gmungoc
JAL-1989 tightened up use of flag for 'column selection...
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2016-04-27
Jim Procter
JAL-2085 JAL-2086 fix hiddenRepSequence and new referen...
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2016-04-04
Jim Procter
JAL-969 refactor columnselection operation (during...
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2016-03-07
gmungoc
JAL-2023 CDS sequences added to / share alignment dataset
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2016-03-01
gmungoc
Merge branch 'develop' into features/JAL-653_JAL-1766_h...
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2016-02-26
tcofoegbu
JAL-1994 updated implementation for broken tests
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2016-02-26
tcofoegbu
JAL-1994 fix for broken tests
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2016-02-25
gmungoc
Merge branch 'develop' into features/JAL-653_JAL-1766_h...
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2016-02-22
tcofoegbu
JAL-1944 bugfix for error when exporting hidden sequenc...
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2016-02-22
gmungoc
JAL-1705 first pass at applying preset feature colourin...
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2016-01-28
gmungoc
Merge branch 'develop' into JAL-1705_trialMerge
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2016-01-11
gmungoc
JAL-1989 more unit tests and encapsulation for ColumnSe...
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2015-12-22
gmungoc
JAL-653 realise virtual mappings and align when adding...
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2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
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2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
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2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
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2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
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2015-09-03
Jim Procter
JAL-961 TODO use workers for calculations supporting...
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diff to current
2015-09-03
Jim Procter
JAL-1551 source tidy
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2015-08-17
gmungoc
JAL-1691 scan full width and depth of alignment for...
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2015-06-30
gmungoc
JAL-1691 trackpad scrolling goes to full width even...
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2015-06-19
Jim Procter
JAL-653 JAL-1780 dropped av.setHasHiddenRows() and...
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2015-06-19
Jim Procter
JAL-1780 JAL-653 organise imports
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2015-06-10
tcofoegbu
JAL-1641 updated applet version
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2015-04-28
gmungoc
JAL-1684 removed reflection from ViewStyle (to Junit...
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2015-04-27
gmungoc
JAL-1691 more stable linked scrolling across split...
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2015-04-08
gmungoc
JAL-1691 applet SplitFrame scrolling; pull up of 5...
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2015-04-02
gmungoc
JAL-1690 'scale protein as cDNA' options in Preferences...
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2015-04-01
gmungoc
JAL-1264 reinstate Show annotations menu item
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2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
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2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
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2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
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2015-01-23
Jim Procter
JAL-969 hasHiddenRows is now an interface method
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2015-01-23
Jim Procter
JAL-969 drop the hiddenColumns flag in favour of checki...
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2015-01-23
Jim Procter
JAL-969 javadoc and mark interface overrides for clarity
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2015-01-23
Jim Procter
JAL-1628 drop getShowAnnotation accessor in favour...
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2015-01-18
Jim Procter
JAL-1628 method to hide insertions to current sequence...
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2015-01-18
Jim Procter
JAL-1628 wrappers for common checks on ColumnSelection
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2015-01-09
Jim Procter
Merge branch 'JAL-1372_referenceseq' into feature_29...
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2014-12-22
Jim Procter
Merge: 497958b 68dcaa7
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