| 2018-02-28 |
gmungoc | JAL-2629 some tidying of Hmmer commands (wip) |
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| 2018-02-22 |
gmungoc | JAL-2629 tidy unit tests, constants etc |
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| 2018-02-20 |
gmungoc | JAL-2629 removed SequenceI.get/setLastPosition and... |
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| 2018-02-20 |
gmungoc | Merge branch 'develop' into features/mchmmer |
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| 2017-10-27 |
gmungoc | JAL-1793 spike branch updated to latest |
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| 2017-10-26 |
Jim Procter | JAL-2488 patch causes of NPE during testStoreAndRecover... |
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| 2017-10-25 |
Jim Procter | Merge branch 'bug/JAL-2727closeAllFreeMemory' into... |
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| 2017-10-24 |
gmungoc | JAL-2738 update spike branch with latest |
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| 2017-10-11 |
kiramt | JAL-2742 removed unused getViewAsCigars |
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| 2017-10-03 |
gmungoc | JAL-2738 copy to spikes/mungo |
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| 2017-09-14 |
gmungoc | JAL-2727 null more fields in AlignmentViewport.dispose... |
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| 2017-09-13 |
gmungoc | JAL-2727 null additional references on close |
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| 2017-09-12 |
gmungoc | Revert "JAL-2727 null hconsensus, " |
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| 2017-09-12 |
gmungoc | JAL-2727 null hconsensus, |
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| 2017-09-12 |
gmungoc | JAL-2727 ensure ViewportRanges (and gapcounts) are... |
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| 2017-09-01 |
TZVanaalten | JAL-2629 manual curation of HMMs via reference annotati... |
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| 2017-08-28 |
tzvanaalten | JAL-2629 add option to set HMM Logo letter height to... |
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| 2017-08-25 |
TZVanaalten | JAL-2629 add adjustable parameters to hmmbuild |
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| 2017-08-25 |
TZVanaalten | JAL-2629 fix for NPE caused by incorrect initiation... |
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| 2017-08-25 |
TZVanaalten | JAL-2629 add basic parameter adjustment to hmmsearch... |
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| 2017-08-18 |
TZVanaalten | Merge branch 'develop' into features/hmmer |
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| 2017-08-17 |
TZVanaalten | JAL-2629 add documentation to previous work |
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| 2017-08-16 |
Jim Procter | JAL-2418 source formatting |
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| 2017-08-15 |
TZVanaalten | JAL-2629 selected HMM name now shown in HMMER menu |
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| 2017-08-11 |
TZVanaalten | JAL-2629 add ability to select HMMs |
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| 2017-08-10 |
TZVanaalten | JAL-2629 hmmalign now correctly creates a new frame |
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| 2017-08-08 |
gmungoc | JAL-2560 alternative fix (reinstate lost line of code) |
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| 2017-08-08 |
gmungoc | JAL-2649 JAL-2650 wait for Conservation calc to complet... |
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| 2017-08-07 |
TZVanaalten | JAL-2629 current hmmer commands are now executed in... |
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| 2017-08-04 |
TZVanaalten | JAL-2629 multiple HMMs can now be dropped onto an alignment |
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| 2017-08-02 |
TZVanaalten | JAL-2599 fix for information annotation buttons |
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| 2017-07-24 |
gmungoc | spike branch updated from latest features/JAL-2446 |
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| 2017-07-14 |
TZVanaalten | add partial button fix to annotation and statistics... features/hmmer_statistics |
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| 2017-07-12 |
TZVanaalten | test HMM annotaTION |
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| 2017-07-06 |
gmungoc | JAL-147 unit test for hide/show sequences update Viewpo... |
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| 2017-07-04 |
gmungoc | JAL-147 revised update of startSeq, endSeq on unhide... |
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| 2017-07-04 |
gmungoc | JAL-147 corrected update of ViewportRanges for show... |
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| 2017-07-04 |
gmungoc | JAL-147 update ViewportRanges height after show/hide... |
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| 2017-07-03 |
gmungoc | Merge branch 'develop' into bug/JAL-147scrollWrappedView |
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| 2017-06-30 |
gmungoc | JAL-2602 pulled up identical methods to base class |
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| 2017-06-29 |
gmungoc | JAL-147 improved wrapped scrolling (including Overview... |
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| 2017-06-29 |
TZVanaalten | transferred the storage position of the HMM to annotations |
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| 2017-06-09 |
gmungoc | JAL-2446 merged to spike branch |
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| 2017-06-06 |
kiramt | JAL-2591 Removed getHiddenRegions()==null checks which... |
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| 2017-05-24 |
kiramt | JAL-2034 Added isDefined flag to SequenceGroup |
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| 2017-05-15 |
Jim Procter | JAL-2371 create a default ResidueShader when constructi... |
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| 2017-05-12 |
Jim Procter | Merge branch 'features/JAL-2435splitScreenFont' into... |
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| 2017-05-05 |
gmungoc | Merge branch 'develop' into features/JAL-2435splitScree... |
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| 2017-05-05 |
kiramt | Merge remote-tracking branch |
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| 2017-05-05 |
kiramt | Merge remote-tracking branch 'origin/develop' into |
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| 2017-05-03 |
Jim Procter | JAL-1933 JAL-2501 i18n for all auto calculated descriptions features/JAL-2432_annotbypercent |
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| 2017-04-27 |
Jim Procter | JAL-1933 consensus calculation doesn’t depend on occupa... |
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| 2017-04-27 |
Jim Procter | JAL-1933 only create and add occupancy row to alignment... |
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| 2017-04-27 |
Jim Procter | JAL-1933 occupancy row has a space below it for counts |
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| 2017-04-24 |
kiramt | Merge remote-tracking branch |
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| 2017-04-24 |
kiramt | JAL-2388 Finished split of hidden columns and selected... |
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| 2017-04-24 |
kiramt | JAL-2388 Hidden cols separated from column selection... |
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| 2017-04-19 |
kiramt | Merge remote-tracking branch 'origin/develop' into |
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| 2017-04-03 |
gmungoc | Merge branch 'develop' into features/JAL-2435splitScree... |
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| 2017-03-31 |
gmungoc | Merge branch 'develop' into bug/JAL-2431splitFrameNewView bug/JAL-2431splitFrameNewView |
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| 2017-03-31 |
gmungoc | JAL-2435 slightly more sensible behaviour changing... |
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| 2017-03-22 |
kiramt | Merge remote-tracking branch 'origin/develop' into |
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| 2017-03-21 |
kiramt | JAL-2388 Made ViewportRanges final |
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| 2017-03-21 |
Jim Procter | Merge branch 'features/JAL-2388OverviewWindow' into... |
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| 2017-03-16 |
kiramt | JAL-2388 Applied ViewportRanges to code |
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| 2017-03-16 |
kiramt | JAL-2388 Renamed viewport position props to viewport... |
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| 2017-03-15 |
gmungoc | JAL-2431 show cDNA consensus after New View in split... |
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| 2017-03-15 |
kiramt | JAL-2388 Unit tests and tidies |
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| 2017-03-01 |
kiramt | JAL-2388 Reverted to previous |
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| 2017-03-01 |
gmungoc | Merge branch 'features/JAL-2295setChimeraAttributes... |
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| 2017-03-01 |
kiramt | JAL-2388 Preliminary refactor check-in, does not compile |
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| 2017-02-28 |
kiramt | JAL-2388 First move of endRes etc out of AlignmentViewp... |
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| 2017-02-27 |
kiramt | JAL-2388 Make startRes,startSeq,endRes,endSeq private... |
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| 2017-02-21 |
kiramt | Merge branch 'develop' into features/JAL-2388OverviewWindow |
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| 2017-02-10 |
gmungoc | JAL-2371 small move of code, typo correction |
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| 2017-02-09 |
kiramt | Merge remote-tracking branch 'origin/develop' into... |
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| 2017-02-09 |
kiramt | JAL-2388 Initial refactor of OverviewPanel |
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| 2017-02-09 |
gmungoc | JAL-2405 set initial selection group alignment context |
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| 2017-02-08 |
gmungoc | JAL-2405 set context on selection group for tailored... |
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| 2017-01-31 |
gmungoc | JAL-2371 commented code removed only |
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| 2017-01-31 |
gmungoc | JAL-2371 rename global/viewportColourScheme to residueS... |
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| 2017-01-31 |
gmungoc | JAL-2385 more tests/bug fixes mostly for gui.SliderPane... |
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| 2017-01-27 |
gmungoc | JAL-2371 CollectionColourScheme renamed ResidueShader... |
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| 2017-01-27 |
gmungoc | JAL-2360 JAL-2371 updates from review CR-JAL-1 |
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| 2017-01-23 |
gmungoc | JAL-2386 unit tests for change colour (and minor refact... |
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| 2017-01-23 |
gmungoc | JAL-2386 simplify changeColour (doesn't change colour... |
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| 2017-01-04 |
gmungoc | JAL-2371 CollectionColourScheme wraps ColourSchemeI |
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| 2016-12-20 |
gmungoc | JAL-2360 ColourSchemes holds configured schemes, AlignF... |
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| 2016-12-04 |
Jim Procter | JAL-1933 switch from gap count to occupancy |
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| 2016-12-02 |
gmungoc | JAL-1933 gap value as description; minor formatting |
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| 2016-12-01 |
Jim Procter | JAL-1933 basic hack to get gap counts shown as an annot... |
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| 2016-11-22 |
Jim Procter | Merge branch 'features/JAL-1738_JAL-345_selectionfromhi... |
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| 2016-11-17 |
gmungoc | JAL-98 ProfilesI container for profiles for columns |
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| 2016-11-02 |
gmungoc | JAL-98 JAL-1854 encapsulate 'magic number' threshold... |
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| 2016-11-02 |
gmungoc | JAL-98 ProfileI interface for Profile |
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| 2016-11-02 |
gmungoc | JAL-98 Profile and ResidueCount moved from analysis... |
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| 2016-10-28 |
Jim Procter | JAL-966 SearchResultsI now on viewmodels.AlignmentViewp... |
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| 2016-10-28 |
Jim Procter | JAL-966 JAL-1738 JAL-345 interfaces for SearchResults... |
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| 2016-10-26 |
gmungoc | Merge branch 'bug/JAL-98consensusMemory' into develop |
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| 2016-10-26 |
gmungoc | JAL-98 null reference to globalColourScheme as it has... |
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