Merge branch 'develop' into releases/Release_2_11_Branch
[jalview.git] / src / jalview / viewmodel /
2017-07-14 kiramtJAL-2611 Pre-merge checkin
2017-07-13 kiramtJAL-2611 Added overview dimensions test for position...
2017-07-13 kiramtJAL-2613 Unit tests and a fix. Phew.
2017-07-12 kiramtJAL-2613 Centre alignment at click point
2017-07-06 gmungocJAL-1858 scrollToWrappedVisible preserve any horizontal...
2017-07-06 gmungocJAL-147 prevent vertical Overview box movement in wrapp...
2017-07-06 gmungocJAL-147 unit test for hide/show sequences update Viewpo...
2017-07-05 gmungocJAL-147 prevent overview box move up over hidden first...
2017-07-04 gmungocJAL-147 revised update of startSeq, endSeq on unhide...
2017-07-04 gmungocJAL-147 unit tests added, unused setEndRes removed
2017-07-04 gmungocJAL-147 corrected update of ViewportRanges for show...
2017-07-04 gmungocJAL-147 update ViewportRanges height after show/hide...
2017-07-04 gmungocJAL-147 extract local variable for ease of debugging
2017-07-03 gmungocMerge branch 'develop' into bug/JAL-147scrollWrappedView
2017-07-03 gmungocJAL-147 don't scroll Overview box outside panel dimensions
2017-07-03 gmungocJAL-147 ViewportRanges calculate wrapped vertical scrol...
2017-06-30 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-06-30 gmungocJAL-147 don't page up above origin, repaint ids for...
2017-06-30 gmungocJAL-2602 pulled up identical methods to base class
2017-06-30 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-06-29 gmungocJAL-147 improved wrapped scrolling (including Overview...
2017-06-28 kiramtJAL-2600 updates following review
2017-06-27 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-06-09 gmungocJAL-2593 avoid redundant rendering of co-located features
2017-06-06 kiramtJAL-2591 Removed getHiddenRegions()==null checks which...
2017-06-05 gmungocMerge branch 'features/JAL-2446NCList' into
2017-06-05 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-06-02 kiramtJAL-2577 Don't allow viewport ranges below 0. Unit... bug/JAL-2577
2017-06-02 gmungocMerge branch 'features/JAL-2446NCList' into features...
2017-06-01 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-06-01 gmungocJAL-2754 Sequence.findFeatures(fromCol, toCol) features/JAL-2754findFeaturesByColumn
2017-05-31 gmungocJAL-2483 JAL-2575 don't sort newly discovered features
2017-05-31 gmungocJAL-2574 preparation for Sequence.findFeatures(col1...
2017-05-30 kiramtJAL-2573 Fixes for alignment < viewport width, and... JAL-2571
2017-05-30 kiramtJAL-2571 Corrected alignment width/height checks to...
2017-05-30 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-05-29 Jim ProcterMerge branch 'bug/JAL-2034contextchange' into develop
2017-05-29 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-05-27 Jim ProcterMerge branch 'bug/JAL-2491' into develop
2017-05-24 kiramtJAL-2034 Added isDefined flag to SequenceGroup
2017-05-23 gmungocJAL-2490 find features for export as GFF, JAL-2548...
2017-05-22 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-05-17 gmungocMerge branch 'develop' into bug/JAL-2510amendFeatures
2017-05-16 kiramtMerge branch 'develop' into bug/JAL-2491
2017-05-16 kiramtJAL-2491 Better merge
2017-05-15 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-05-15 kiramtJAL-2491 Better merge but not quite right yet
2017-05-15 Jim ProcterJAL-2371 create a default ResidueShader when constructi...
2017-05-15 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-05-15 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-05-12 kiramtJAL-2491 Tidy
2017-05-12 kiramtJAL-2491 Tidies to Overview panel calls in light of...
2017-05-12 Jim ProcterMerge branch 'features/JAL-2435splitScreenFont' into...
2017-05-12 kiramtJAL-2491 Renamed comp scrolling flag for consistency...
2017-05-12 kiramtJAL-2491 Unit test updates
2017-05-11 kiramtJAL-2491 Unit tests and updates
2017-05-10 kiramtJAL-2491 Make it work with cursor movement
2017-05-10 kiramtJAL-2491 Cursor scrolling
2017-05-09 kiramtJAL-2491 Tidies and more refactoring
2017-05-09 gmungocJAL-2483 JAL-2481 fixed findAllFeatures to handle null...
2017-05-08 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-05-08 kiramtJAL-2491 More wrap corrections
2017-05-08 kiramtJAL-2491 Tweaks to avoid scroll problems at bottom...
2017-05-08 kiramtJAL-2491 Started moving other scrolling fns into viewpo...
2017-05-05 gmungocMerge branch 'develop' into features/JAL-2435splitScree...
2017-05-05 gmungocJAL-964 JAL-2510 update Feature Settings from Amend...
2017-05-05 kiramtMerge remote-tracking branch
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into
2017-05-04 Jim ProcterMerge branch 'features/JAL-2393customMatrices' into...
2017-05-04 Jim ProcterMerge branch 'features/JAL-2393customMatrices' into...
2017-05-03 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-05-03 Jim ProcterJAL-1933 JAL-2501 i18n for all auto calculated descriptions features/JAL-2432_annotbypercent
2017-05-03 kiramtJAL-2491 sort of working overview/find interaction...
2017-05-02 gmungocJAL-2499 JAL-2403 push 'configure for view' inside...
2017-05-02 kiramtJAL-2491 first addition of new event
2017-04-28 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-04-28 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-04-27 Jim ProcterJAL-1933 consensus calculation doesn’t depend on occupa...
2017-04-27 Jim ProcterJAL-1933 only create and add occupancy row to alignment...
2017-04-27 Jim ProcterJAL-1933 occupancy row has a space below it for counts
2017-04-26 gmungocJAL-2490 findFeaturesAtRes with performant feature...
2017-04-26 kiramtJAL-2388 Tidies and unit tests
2017-04-25 kiramtJAL-2388 Working hidden regions hide/show in desktop
2017-04-24 kiramtMerge remote-tracking branch
2017-04-24 kiramtJAL-2388 Finished split of hidden columns and selected...
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection...
2017-04-21 kiramtJAL-2388 Tidies
2017-04-21 kiramtJAL-2388 Make sure resizing still works
2017-04-21 kiramtJAL-2388 Alignment col and row collections with iterators
2017-04-20 gmungocJAL-2483 JAL-2481 findAllFeatures without scanning...
2017-04-19 kiramtMerge remote-tracking branch 'origin/develop' into
2017-04-10 gmungocJAL-2403 removed remaining jvCalcMode references from PCA
2017-04-07 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-04-03 gmungocMerge branch 'develop' into features/JAL-2435splitScree...
2017-03-31 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-03-31 gmungocMerge branch 'develop' into bug/JAL-2431splitFrameNewView bug/JAL-2431splitFrameNewView
2017-03-31 gmungocJAL-2435 slightly more sensible behaviour changing...
2017-03-29 kiramtJAL-2388 New rendering code, extensions to support...
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