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JAL-3878 Add getCalcName to AlignCalcWorkerI.
[jalview.git]
/
src
/
jalview
/
ws
/
jws2
/
2021-11-23
Mateusz Warowny
JAL-3878 Add getCalcName to AlignCalcWorkerI.
tree
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commitdiff
2021-10-06
Mateusz Warowny
JAL-3899 Update usages of uniquify and deuniquify.
tree
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commitdiff
2021-07-29
Mateusz Warowny
Merge branch 'improvement/JAL-3848_slivka_0.8' into...
tree
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commitdiff
2021-07-27
Mateusz Warowny
Merge branch 'bug/JAL-3807_jpred-with-slivka' into...
tree
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commitdiff
2021-07-08
Mateusz Warowny
JAL-3849 Remove join() which blocked the ui.
tree
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commitdiff
2021-02-22
Mateusz Warowny
JAL-3807 - Add single sequence capabilities to jws2...
tree
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commitdiff
2021-02-22
Mateusz Warowny
JAL-3807 - Move new JPred client to the jws2 package.
tree
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commitdiff
2021-02-22
Mateusz
JAL-3807 JPred can now successfully submit and track...
tree
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commitdiff
2021-02-22
Mateusz Warowny
Merge branch 'bug/JAL-3810_annotation_ws_stopping_abrup...
bug/JAL-3809_ws_params_dialog_fix
tree
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commitdiff
2021-02-22
Mateusz Warowny
JAL-3809 - Fixed param edit dialog for jalviewjs.
tree
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commitdiff
2021-02-05
Mateusz Warowny
JAL-3810 - Replace log.trace() calls with log.debug()
tree
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commitdiff
2020-12-14
Jim Procter
Merge branch 'Jalview-JS/develop' into merge_js_develop
tree
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commitdiff
2020-11-13
Mateusz Waronwy
JAL-3690 separate startup and poll code in SeqAnnotatio...
tree
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commitdiff
2020-10-21
Mateusz Warowny
JAL - 3690 AlignCalc rebuilt - FutureTask-based manager
tree
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commitdiff
2020-07-20
Mateusz Warowny
JAL-3690 alternative servers menu fix
tree
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commitdiff
2020-07-16
Mateusz Warowny
JAL-3690 switching to CompletableFuture to allow chaining
tree
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commitdiff
2020-07-15
Mateusz Warowny
JAL-3690 refactoring web-services discovery
tree
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commitdiff
2020-07-09
Mateusz Warowny
Merge branch 'feature/JAL-3686_slivka_client_js_update...
alpha/merge_212_JalviewJS_2112
tree
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commitdiff
2020-06-06
BobHanson
JAL-3446 no actual changes; just using meaningful frame...
tree
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commitdiff
2020-06-03
BobHanson
JAL-3446 from JAL-3253 Discoverers
tree
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commitdiff
2020-06-03
BobHanson
JAL-3446 from JAL-3253 ApplicationSingletonProvider...
tree
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commitdiff
2020-06-02
BobHanson
JAL-3446 from JAL-3253-applet Desktop and Jws2Discovere...
tree
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commitdiff
2020-05-18
Jim Procter
Merge branch 'alpha/JAL-3362_Jalview_212_alpha' into...
tree
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commitdiff
2020-02-04
MMWarowny
JAL-3515 Extract core WSDiscoverer methods to a separat...
tree
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commitdiff
2019-10-10
Jim Procter
JAL-3070 set calcId and autocalculated flags for annota...
tasks/JAL-3070_wsinterfaces
tree
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commitdiff
2019-10-10
Jim Procter
JAL-3070 registerWorker start its thread automatically...
tree
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commitdiff
2019-10-07
Jim Procter
JAL-3066 report job ID when submitted
tree
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commitdiff
2019-10-07
Jim Procter
JAL-3070 JAL-3066 provide standard concrete instances...
tree
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commitdiff
2019-10-07
Jim Procter
JAL-3070 formatting
tree
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commitdiff
2019-10-03
Jim Procter
JAL-3070 alignment analysis service worker UI and setti...
tree
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commitdiff
2019-10-03
Jim Procter
JAL-3070 call checkDone() ASAP to avoid race condition...
tree
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commitdiff
2019-10-02
Jim Procter
JAL-3070 decouple WsMenuEntryProviderI code from JABAWS
tree
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commitdiff
2019-10-02
Jim Procter
JAL-3070 reorganise prior to refactor
tree
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commitdiff
2019-10-02
Jim Procter
JAL-3070 make AlignCalcUI service code work only with...
tree
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commitdiff
2019-10-02
Jim Procter
JAL-3070 discoverers return ServiceWithParameter, now...
tree
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commitdiff
2019-10-02
Jim Procter
JAL-3070 decontaminate the ‘preferred service’ methods...
tree
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commitdiff
2019-10-02
Jim Procter
JAL-3070 detect failed/broken annotation web service...
tree
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commitdiff
2019-10-02
Jim Procter
JAL-3070 pull up generic methods for an automatic align...
tree
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commitdiff
2019-10-01
Mateusz Warowny
JAL-3066 Sequence annotation services.
tree
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commitdiff
2019-09-26
Jim Procter
JAL-3070 JAL-3066 JAL-3067 refactor annotation web...
tree
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commitdiff
2019-09-24
Jim Procter
JAL-3070 tidying
tree
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commitdiff
2019-09-23
Jim Procter
JAL-3066 JAL-3070 pull up non-jabaws specific service...
tree
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commitdiff
2019-09-23
Jim Procter
JAL-3070 configure annotation service manager from...
tree
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commitdiff
2019-09-23
Jim Procter
JAL-3070 rename AbstractJabaCalcWorker to SeqAnnotation...
tree
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commitdiff
2019-09-23
Jim Procter
JAL-3070 ensure RNAAliFold annotation rows display...
tree
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commitdiff
2019-09-23
Jim Procter
JAL-3070 formatting
tree
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commitdiff
2019-09-23
Jim Procter
JAL-3070 detect presence of existing JABA RNAAliFold...
tree
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commitdiff
2019-09-23
Jim Procter
JAL-3070 match AbstractJabaCalcWorker’s annotation...
tree
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commitdiff
2019-09-23
Jim Procter
JAL-3070 javadoc for (mostly) jabaws specific methods
tree
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commitdiff
2019-09-20
Jim Procter
JAL-3070 rough-and-ready refactor of JABA SequenceAnnot...
tree
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commitdiff
2019-09-20
Jim Procter
JAL-3070 JAL-1379 deferred work on annotation based...
tree
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commitdiff
2019-09-06
Mateusz Warowny
JAL-3066 Working custom parameters for clustalo
tree
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commitdiff
2019-07-16
gmungoc
JAL-3210 Merge branch 'develop' into trialMerge
tree
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commitdiff
2019-07-10
Jim Procter
JAL-3070 standard way of storing/recovering documentati...
tree
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commitdiff
2019-07-10
Jim Procter
JAL-3070 remove final reference to Jws2Instance
tree
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commitdiff
2019-07-10
Jim Procter
Merge branch 'tasks/JAL-3070_wsinterfaces' into alpha...
tree
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commitdiff
2019-06-04
Jim Procter
Merge branch 'develop' into developtomchmmer
tree
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commitdiff
2019-04-04
gmungoc
JAL-3220 j2sIgnore on main methods on test / utility...
tree
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commitdiff
2019-04-04
gmungoc
JAL-3220 unneeded main methods removed
tree
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commitdiff
2019-03-21
Ben Soares
JAL-3130 Replaced deprecated Class.newInstance() with...
tree
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commitdiff
2019-03-20
Ben Soares
JAL-3130 Lots of deprecation fixes. See utils/deprecat...
tree
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commitdiff
2019-03-13
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2019-01-26
hansonr
Jalview.isJS() --> Platform.isJS(), DBRefEntry[] -...
tree
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commitdiff
2018-09-21
gmungoc
JAL-3120 preserve feature colour/mincolour/maxcolour...
bug/JAL-3120restoreFeatureColour
tree
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commitdiff
2018-08-03
Jim Procter
JAL-3070 MsaWSClient doens’t depend on Jws2Instance...
tree
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commitdiff
2018-08-03
Jim Procter
JAL-3070 web service handle with UIinfo.hasParameters...
tree
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commitdiff
2018-08-02
Jim Procter
JAL-3070 base interface for service endpoint implementa...
tree
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commitdiff
2018-08-01
Jim Procter
JAL-3070 refactored Client specific code from jalview...
tree
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commitdiff
2018-07-27
Jim Procter
JAL-3070 pull up sequence anonymisation hash, presets...
tree
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commitdiff
2018-07-26
Jim Procter
JAL-3070 pull up logic for offering a parameters dialog...
tree
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commitdiff
2018-07-26
Jim Procter
JAL-3070 abstract class for services with adjustable...
tree
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commitdiff
2018-07-26
Jim Procter
JAL-3070 use ArgumentI in all public constructors,...
tree
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commitdiff
2018-07-26
Jim Procter
JAL-3070 pull up setWebService and alignFrame reference
tree
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commitdiff
2018-07-23
Jim Procter
JAL-3070 pushed down JABAWS specific args for WsJobPara...
tree
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commitdiff
2018-07-23
Jim Procter
JAL-3070 refactored JABAWS specific jalview.gui.WsJobPa...
tree
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commitdiff
2018-07-23
Jim Procter
Merge branch 'features/mchmmer' into merge/wsinterfaces...
tree
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commitdiff
2018-07-20
Jim Procter
JAL-3070 pull up hostURL and postURL to UIinfo and...
tree
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commitdiff
2018-07-20
Jim Procter
JAL-3070 core service descriptors for JABAWS services...
tree
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commitdiff
2018-07-10
gmungoc
JAL-3048 code reordered for JalviewJS compliance
tree
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commitdiff
2018-05-14
gmungoc
JAL-2989 support value display names for Option or...
tree
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commitdiff
2018-04-20
gmungoc
JAL-591 OptionBox FlowLayout, tweaks to wrapping of...
tree
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commitdiff
2018-04-16
gmungoc
JAL-2937 use preferences for presets, simplify some...
tree
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commitdiff
2018-02-20
gmungoc
Merge branch 'develop' into features/mchmmer
tree
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commitdiff
2017-10-27
gmungoc
JAL-1793 spike branch updated to latest
tree
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commitdiff
2017-10-26
Jim Procter
Merge branch 'feature/JAL-2488finalize' into develop
tree
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commitdiff
2017-10-25
Jim Procter
Merge branch 'bug/JAL-2392_deadlockonpdbdisplay' into...
tree
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commitdiff
2017-10-25
Jim Procter
JAL-2790 provide a cancel button for JABAWS and AACon...
tree
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commitdiff
2017-10-24
gmungoc
JAL-2738 update spike branch with latest
tree
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commitdiff
2017-10-12
Jim Procter
JAL-2773 add new flag to paintAlignment(updateOverview...
features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview
tree
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commitdiff
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
tree
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commitdiff
2017-09-01
gmungoc
JAL-2488 remove finalize methods
tree
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commitdiff
2017-08-21
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
features/JAL-2446NCList
tree
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commitdiff
2017-08-18
TZVanaalten
Merge branch 'develop' into features/hmmer
tree
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commitdiff
2017-08-16
Jim Procter
JAL-2418 source formatting
tree
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commitdiff
2017-08-14
Jim Procter
JAL-2335 choose appropriate alphabet for filtering...
tree
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commitdiff
2017-08-14
Jim Procter
JAL-2335 source formatting
tree
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commitdiff
2017-08-14
Jim Procter
JAL-2335 filterNonStandardResidues configurable for...
tree
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commitdiff
2017-08-14
Jim Procter
JAL-2663 flag and filter to exclude non-standard amino...
tree
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commitdiff
2017-08-14
Jim Procter
JAL-2663 source formatting
tree
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commitdiff
2017-08-10
TZVanaalten
JAL-2629 hmmalign now correctly creates a new frame
tree
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commitdiff
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