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JAL-1159 Merging 2.8.1 patches and Anne Menards work from 2012 into development branch
[jalview.git] / src / jalview / ws /
2013-10-15 Jim ProcterJAL-1159 Merging 2.8.1 patches and Anne Menards work... tree | commitdiff
2013-10-14 Jim ProcterMerge branch 'develop' into dev_from_2_8_1 tree | commitdiff
2013-10-11 Jim ProcterMerge branch 'JAL-1164_disorderforselection' into Relea... tree | commitdiff
2013-10-11 Jim ProcterJAL-1164 scope bySequence analysis methods to start... tree | commitdiff
2013-10-11 Jim ProcterJAL-1164 only predict on currently selected sequences... tree | commitdiff
2013-10-05 Jim ProcterJAL-1379 JAL-1378 exclusion list property to ignore... tree | commitdiff
2013-10-05 Jim ProcterJAL-1378 hack to place 'Predictors' into Secondary... tree | commitdiff
2013-10-05 Jim ProcterJAL-1364 use gapMap to map RNAalifold annotation onto... tree | commitdiff
2013-10-05 Jim ProcterJAL-1379 JAL-1358 only enable/disable menu entries... tree | commitdiff
2013-10-04 Jim ProcterJAL-1378 JWS-71 update to from-source build of JABA... tree | commitdiff
2013-09-25 Jim ProcterJAL-1365 unified GUI building for AACon and RNAAliFold... tree | commitdiff
2013-09-25 Jim ProcterJAL-1365 use AlignAnalysisUIText class to provide metad... tree | commitdiff
2013-09-25 Jim ProcterJAL-1365 refactored core methods from RNAAliFold and... tree | commitdiff
2013-09-25 Jim ProcterJAL-1365 new metadata class to describe instantaneous... tree | commitdiff
2013-09-20 Jim Procterformatting tree | commitdiff
2013-09-03 Jim ProcterMerge branch 'JAL-1373_precision' into RNAalifold tree | commitdiff
2013-08-30 Daniel BartonColour be RNA helices bug fixed tree | commitdiff
2013-08-30 Daniel BartonJAL-1358 Cleaned up RNAalifoldClient.java. RNA helices... tree | commitdiff
2013-08-28 Daniel BartonRNAalifoldClient updated to be more like AAConClient... tree | commitdiff
2013-08-27 Daniel BartonJAL-1358 jalview displays some RNA struture annotation... tree | commitdiff
2013-08-27 Jim ProcterMerge branch 'JAL-1359_patch' into develop tree | commitdiff
2013-08-27 Jim ProcterJAL-1359 simpler logic for deciding if all threads... tree | commitdiff
2013-08-27 Daniel BartonJAL-1358 RNAStructExportImport test file mirrors Disord... tree | commitdiff
2013-08-27 Daniel BartonJAL-1358 Just the eclipse project/classpath files so... tree | commitdiff
2013-06-21 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-06-21 Jim ProcterMerge branch 'JAL-1321_jws2_tooltips' into develop tree | commitdiff
2013-06-19 Jim ProcterJAL-1240 avoid NPE when source has no proxy available tree | commitdiff
2013-06-19 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-06-19 Jim ProcterMerge branch 'JAL-1321_jws2_tooltips' into develop tree | commitdiff
2013-06-18 Jim ProcterJAL-1320 ascending alphabetical order tree | commitdiff
2013-06-18 Jim ProcterJAL-1320 sort options and parameters according to their... tree | commitdiff
2013-06-18 Jim Proctertypo tree | commitdiff
2013-06-18 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-06-18 Jim ProcterJAL-674 - avoid java.util.ConcurrentModificationExcepti... tree | commitdiff
2013-06-17 Jim ProcterMerge branch 'JAL-1319_jronn_npe' into develop tree | commitdiff
2013-06-17 Jim ProcterJAL-1319 (blacklist fix) check for presence of a score... tree | commitdiff
2013-06-09 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-06-09 Jim ProcterMerge branch '2_8_1_patch_multiharmony' into develop tree | commitdiff
2013-06-09 Jim Procterfix for JAL-1298 tree | commitdiff
2013-06-09 Jim ProcterJAL-715 - TODO tree | commitdiff
2013-06-07 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-06-07 Jim ProcterMerge branch '2_8_1_patch_multiharmony' into develop tree | commitdiff
2013-06-07 Jim ProcterJAL-1309 fix broken partition computation for adding... tree | commitdiff
2013-06-07 Jim ProcterJAL-945 uniquify prior to submission tree | commitdiff
2013-06-07 Jim Procterformatting tree | commitdiff
2013-06-07 Jim ProcterJAL-715 allow headless construction for testing tree | commitdiff
2013-06-07 Jim ProcterJAL-724 JAL-715 refactor and create new test for RSBS... tree | commitdiff
2013-06-07 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-06-07 Jim ProcterMerge branch 'JAL-1161_optimisingAnnotationPanel' into... tree | commitdiff
2013-05-24 Jim Proctertypo tree | commitdiff
2013-02-11 jprocterupgrade to latest paradise services model using JSon... tree | commitdiff
2013-01-20 jprocterMerge branch 'Dbfetch_hotfix-JAL-1238' into develop tree | commitdiff
2013-01-18 jprocterJAL-1238 order to place primary sources before lower... tree | commitdiff
2013-01-18 jprocterJAL-1238 method to test if DAS source is a primary... tree | commitdiff
2013-01-18 jprocterJAL-1238 tier index indicating distance of a source... tree | commitdiff
2013-01-18 jprocterMerge branch 'JAL-1254-hotfix' into develop tree | commitdiff
2012-12-11 jprocterJAL-1217 check and avoid NPE if no datastore object... tree | commitdiff
2012-12-11 jprocterJAL-1217 report exception for service when no datastore... tree | commitdiff
2012-11-17 jprocterreturn alignmentI created from pdbfile class directly... tree | commitdiff
2012-11-17 jproctercall annotate3d service and parse rnaml to alignment tree | commitdiff
2012-11-17 jprocterformatting tree | commitdiff
2012-11-17 jproctersimple HTTP multipart entity poster - may not be useful tree | commitdiff
2012-11-15 jproctersource formatting tree | commitdiff
2012-11-15 jprocterMerge branch 'develop' into menard tree | commitdiff
2012-11-08 jproctertidy imports tree | commitdiff
2012-10-22 jprocterJalview 2.8 Source Header tree | commitdiff
2012-10-04 jprocterMerge branch 'develop' into Release_2_8_Branch tree | commitdiff
2012-10-04 jprocterJAL-636 switch to simple REST interface to dbfetch... tree | commitdiff
2012-10-04 jprocteravoid importing the mapping every time we parse a unipr... tree | commitdiff
2012-10-04 jprocterJAL-636 tweak main() based test to allow DAS sources... tree | commitdiff
2012-10-03 jprocterformatting tree | commitdiff
2012-09-21 jprocterJAL-849 try harder and wait for longer for JABAWS to... tree | commitdiff
2012-09-21 jprocterJAL-1171 refactor code to allow gui update for global... tree | commitdiff
2012-09-21 jprocterJAL-1165 visual delay whilst results are processed. tree | commitdiff
2012-09-05 jprocterJAL-979 tidy up shmmr hardcoded WS definition tree | commitdiff
2012-09-05 jprocterformatting tree | commitdiff
2012-09-05 jprocterpatch for NPE when no services are available to resolve... tree | commitdiff
2012-09-05 jprocterJAL-975 null any existing preset if user has supplied... tree | commitdiff
2012-09-05 jprocterJAL-994 fix when sequence is too short and no jobs run tree | commitdiff
2012-09-05 jprocterJAL-976 fix AACon name typo in source and GUI tree | commitdiff
2012-09-04 jprocteroff by one for sequence associated annotation tree | commitdiff
2012-09-04 jprocterunused variable tree | commitdiff
2012-09-04 jprocterJAL-974 JRonn thresholds tree | commitdiff
2012-09-03 jprocterJAL-975 JAL-974 JAL-976 always adjust height after... tree | commitdiff
2012-09-03 jprocterJAL-974 show thresholds for disorder predictor annotati... tree | commitdiff
2012-09-02 jprocterJAL-659 cope with case insensitive accessions by forcin... tree | commitdiff
2012-09-02 jprocterJAL-1062 JAL-659 correct start position for retrieved... tree | commitdiff
2012-09-02 jprocterJAL-1062 use matching region or first section of sequen... tree | commitdiff
2012-08-31 jprocterMerge branch 'develop' into menard tree | commitdiff
2012-08-31 jprocterJAL-974 - ensure annotation created in local sequence... tree | commitdiff
2012-08-31 jprocterJAL-1064 patch for NPE when registerd database names... tree | commitdiff
2012-08-29 jprocterJAL-974 skip empty rows tree | commitdiff
2012-08-29 jprocterJAL-974 set GlobPlot raw/smooth score annotation rows... tree | commitdiff
2012-08-29 jprocterJAL-1153 new runtime property set to first non-null... tree | commitdiff
2012-08-28 jprocterremove contaminant imports tree | commitdiff
2012-08-28 jprocterJAL-676 JAL-1001 - simple menu item to access documenta... tree | commitdiff
2012-08-28 jprocterformatting tree | commitdiff
2012-08-28 jprocterformatting tree | commitdiff
2012-08-28 jprocterJAL-974 create mixture of sequence features marking... tree | commitdiff
2012-08-28 jprocterJAL-974 refactored creation of Annotation rows from... tree | commitdiff
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