git://source.jalview.org
/
jalview.git
/ history
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
first
⋅
prev
⋅
next
javadoc
[jalview.git]
/
src
/
jalview
/
2008-07-11
jprocter
ensure annotationElements in non-graphical annotation...
tree
|
commitdiff
2008-06-30
jprocter
javadoc and constraint to ensure annotation labels...
tree
|
commitdiff
2008-06-30
jprocter
java 1.1 compatibility
tree
|
commitdiff
2008-06-30
jprocter
timing of 'on load' output before any gui thread operations
tree
|
commitdiff
2008-06-30
jprocter
safer retrieval of groovy scripts from URLs
tree
|
commitdiff
2008-06-30
jprocter
included includeGaps flag in clustalW colour calculatio...
tree
|
commitdiff
2008-06-26
jprocter
added URLEncoder.encode to properly escape CGI encoded...
tree
|
commitdiff
2008-06-23
jprocter
local sequence properties are preserved in SeqCigar...
tree
|
commitdiff
2008-05-26
jprocter
Uniprot is not actually a multi-acc capable source...
tree
|
commitdiff
2008-05-26
jprocter
bugfix so MULTI_ACC capable sources value property...
tree
|
commitdiff
2008-05-26
jprocter
minor bugfix for case when PDB sequence strings are...
tree
|
commitdiff
2008-05-12
jprocter
fixed Jalview project archive bug where alignment view...
tree
|
commitdiff
2008-05-02
jprocter
bugfix to avoid null pointer exceptions being raised...
tree
|
commitdiff
2008-05-01
jprocter
fix for unicode char labels causing arrayOutOfBoundsExc...
tree
|
commitdiff
2008-04-29
jprocter
comments and version wget ping timeout fix for when...
tree
|
commitdiff
2008-04-29
jprocter
added SeqSearch service interface. Documented and refac...
tree
|
commitdiff
2008-04-29
jprocter
trial fix for parsing NHX style trees to extract the...
tree
|
commitdiff
2008-04-25
jprocter
potential fix for hang on opening of application window...
tree
|
commitdiff
2008-04-21
jprocter
documented and refactored to facilitate headless featur...
tree
|
commitdiff
2008-04-21
jprocter
added centre annotation labels menu entry (and commente...
tree
|
commitdiff
2008-04-21
jprocter
centrecolumnlabels format menu item and parameter added...
tree
|
commitdiff
2008-04-17
jprocter
bugfix for refactoring (webservice windows wouldn't...
tree
|
commitdiff
2008-04-17
jprocter
javadoc and refactor of setWebService method to allow...
tree
|
commitdiff
2008-04-17
jprocter
todo for refactoring webservice GUI creation mechanism
tree
|
commitdiff
2008-04-17
jprocter
javadoc for webservice client tutorial
tree
|
commitdiff
2008-04-17
jprocter
todos
tree
|
commitdiff
2008-04-17
jprocter
javadoc and quiet flag
tree
|
commitdiff
2008-04-11
jprocter
fix JPred thread so job aborts if submission fails.
tree
|
commitdiff
2008-04-10
jprocter
quick fix for conservation calculation when residue...
tree
|
commitdiff
2008-04-10
jprocter
bug fix for Features/Annotations file parameter parsing...
tree
|
commitdiff
2008-03-08
jprocter
first hack to get true DNA and Sequence highlighting...
tree
|
commitdiff
2008-02-24
jprocter
sequenceId is a string, not an integer - allows generat...
tree
|
commitdiff
2008-02-24
jprocter
sequenceId is a string, not an integer - allows generat...
tree
|
commitdiff
2008-02-22
jprocter
sequenceId is a string, not an integer - allows generat...
tree
|
commitdiff
2008-02-22
jprocter
valid format for writing test
tree
|
commitdiff
2008-02-22
jprocter
probably unnecessary optimisation (SequenceGroup.addSeq...
tree
|
commitdiff
2008-02-22
jprocter
On 'save' menu entry check to see if fileformat is...
tree
|
commitdiff
2008-02-22
jprocter
CDS segment index
tree
|
commitdiff
2008-02-22
jprocter
possible fix for stockhom ss-annotation re-creation...
tree
|
commitdiff
2008-02-22
jprocter
index number for contiguous part of mapped sequence...
tree
|
commitdiff
2008-02-22
jprocter
javadoc
tree
|
commitdiff
2008-02-22
jprocter
typo for AXISLOGLEVEL constant
tree
|
commitdiff
2008-02-22
jprocter
explicit quote of chaincode in errror message
tree
|
commitdiff
2008-01-29
jprocter
minor change to output of main method for testing file IO
tree
|
commitdiff
2008-01-29
jprocter
memory usage information and flag to indicate if warnin...
tree
|
commitdiff
2008-01-29
jprocter
add methods to read from current position of existing...
tree
|
commitdiff
2008-01-29
jprocter
ensure mark is set before identification is started.
tree
|
commitdiff
2008-01-29
jprocter
FileParse object can be re-used to read different files...
tree
|
commitdiff
2008-01-29
jprocter
flag to indicate if errors are raised as warning dialog...
tree
|
commitdiff
2008-01-29
jprocter
explicitly allow access to showMemoryUsage flag in...
tree
|
commitdiff
2008-01-29
jprocter
javadoc
tree
|
commitdiff
2008-01-29
jprocter
groovy scripts can be read from stdin
tree
|
commitdiff
2008-01-29
jprocter
reinstated proper case insensitive searching for both...
tree
|
commitdiff
2008-01-22
jprocter
timings and memory usage for reading in a file
tree
|
commitdiff
2008-01-22
jprocter
more efficient parsing of large files, do not create...
tree
|
commitdiff
2008-01-22
jprocter
ensured that seqeunce feature shift takes into account...
tree
|
commitdiff
2008-01-22
jprocter
new method to get map of sequence positions correspondi...
tree
|
commitdiff
2008-01-21
jprocter
fix regex for annotation subtype to use non-whitespace...
tree
|
commitdiff
2008-01-21
jprocter
javadoc and main method for testing file input routines
tree
|
commitdiff
2008-01-21
jprocter
javadoc
tree
|
commitdiff
2008-01-11
jprocter
added groovy argument for launching a groovy script...
tree
|
commitdiff
2008-01-11
jprocter
memory monitor, garbage collection and changed menu...
tree
|
commitdiff
2007-12-21
jprocter
uniprotxml format comment (ebi changed service parameter)
tree
|
commitdiff
2007-12-21
jprocter
further bugfix and annotation transfer for dna/protein...
tree
|
commitdiff
2007-12-21
jprocter
javadoc and bugfix
tree
|
commitdiff
2007-12-21
jprocter
sequence db fetcher and db reference validation/annotat...
tree
|
commitdiff
2007-12-21
jprocter
sequence db fetcher metadata for multiple sequence...
tree
|
commitdiff
2007-12-21
jprocter
temporary bugfix ?
tree
|
commitdiff
2007-12-21
jprocter
bugfix
tree
|
commitdiff
2007-12-21
jprocter
equivalence for transferring/updating references
tree
|
commitdiff
2007-12-21
jprocter
bugfixes
tree
|
commitdiff
2007-12-18
jprocter
incorrect colour-by-sequence when gaps are present...
tree
|
commitdiff
2007-12-13
jprocter
java 1.1 compatibility (again)
tree
|
commitdiff
2007-12-13
jprocter
java 1.1 compatibility (again)
tree
|
commitdiff
2007-11-30
jprocter
null pointer bugfix
tree
|
commitdiff
2007-11-30
jprocter
bugfixed MapList (must be propagated to vamsas version...
tree
|
commitdiff
2007-11-30
jprocter
javadoc and transferAnnotation method
tree
|
commitdiff
2007-11-30
jprocter
case insensitive matching of database ids
tree
|
commitdiff
2007-11-30
jprocter
case invariant matching of seqeunce feature to sequence...
tree
|
commitdiff
2007-11-28
jprocter
bugfix
tree
|
commitdiff
2007-11-24
jprocter
only show bootstrap values if they are valid!
tree
|
commitdiff
2007-11-16
jprocter
typo
tree
|
commitdiff
2007-11-16
jprocter
javadoc
tree
|
commitdiff
2007-11-16
jprocter
added generic method for adding new database proxies...
tree
|
commitdiff
2007-11-16
jprocter
refactored ebi soap client and AbstractSequenceFetcher...
tree
|
commitdiff
2007-11-16
jprocter
todo for sortbyPID operating on current selection rathe...
tree
|
commitdiff
2007-11-16
jprocter
javadoc
tree
|
commitdiff
2007-11-16
jprocter
refactor abstract sequence fetching and DBSource machin...
tree
|
commitdiff
2007-11-12
jprocter
crossrefs have properly updated pdbId lists
tree
|
commitdiff
2007-11-12
jprocter
javadoc and introduction of dasserver and fetchdas...
tree
|
commitdiff
2007-11-12
jprocter
added mechanism to initiate DAS feature fetching progra...
tree
|
commitdiff
2007-11-12
jprocter
public access to static getAlignFrames method.
tree
|
commitdiff
2007-11-12
jprocter
public method to indicate if there are progress bars...
tree
|
commitdiff
2007-11-12
jprocter
publicly accessible flag to indicate if a registry...
tree
|
commitdiff
2007-11-12
jprocter
bugfix for occasional race condition causing exception...
tree
|
commitdiff
2007-11-12
jprocter
comments
tree
|
commitdiff
2007-11-12
jprocter
begun adding string constants for source properties
tree
|
commitdiff
2007-11-12
jprocter
javadoc
tree
|
commitdiff
2007-11-08
jprocter
end must be greater than blockstart
tree
|
commitdiff
2007-11-08
jprocter
initialise treeCanvas before starting loading thread
tree
|
commitdiff
next