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JAL-1519 fix author update issue (doh)
[jalview.git]
/
src
/
jalview
/
2013-10-04
Jim Procter
JAL-1383 - disable startup of the Envision2 workflow...
tree
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commitdiff
2013-10-04
Jim Procter
JAL-940 JAL-1378 EOL comment on JWS v1 services
tree
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commitdiff
2013-10-04
Jim Procter
Merge branch 'RNAalifold' into Release_2_8_1_Branch
tree
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commitdiff
2013-10-04
Jim Procter
fix for JAL-1380 and efficiency todo for JAL-1381
tree
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commitdiff
2013-10-04
Jim Procter
JAL-1378 JWS-71 update to from-source build of JABA...
tree
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commitdiff
2013-09-25
Jim Procter
JAL-1365 unified GUI building for AACon and RNAAliFold...
tree
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commitdiff
2013-09-25
Jim Procter
JAL-1365 use AlignAnalysisUIText class to provide metad...
tree
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commitdiff
2013-09-25
Jim Procter
JAL-1365 refactored core methods from RNAAliFold and...
tree
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commitdiff
2013-09-25
Jim Procter
JAL-1365 new metadata class to describe instantaneous...
tree
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commitdiff
2013-09-25
Jim Procter
JAL-1270 nominal jalview version string for projects...
tree
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commitdiff
2013-09-25
Jim Procter
JAL-1270 Desktop.instance is null during headless jalvi...
tree
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commitdiff
2013-09-20
Jim Procter
formatting
tree
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commitdiff
2013-09-18
Jim Procter
JAL-1355 - fix compilation errors: typos and missing...
tree
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commitdiff
2013-09-03
Jim Procter
Merge branch 'JAL-1373_precision' into RNAalifold
tree
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commitdiff
2013-09-03
Jim Procter
JAL-1373 tweak precision calculation so alignments...
tree
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commitdiff
2013-09-03
Jim Procter
JAL-920 compute a consensus for single sequence
tree
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commitdiff
2013-09-02
Jim Procter
Merge branch 'JAL-1373_precision' into develop
tree
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commitdiff
2013-09-02
Jim Procter
JAL-1373 JAL-520 wrap tooltips for columns in annotatio...
tree
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commitdiff
2013-09-02
Jim Procter
JAL-1373 generate percentages with appropriate precision
tree
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commitdiff
2013-09-02
Jim Procter
JAL-1373 pass size of sequence set to consensus renderi...
tree
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commitdiff
2013-08-30
Daniel Barton
Colour be RNA helices bug fixed
tree
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commitdiff
2013-08-30
Daniel Barton
JAL-1358 Cleaned up RNAalifoldClient.java. RNA helices...
tree
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commitdiff
2013-08-30
darolmar
i18n date/time handling
tree
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commitdiff
2013-08-29
darolmar
i18n
tree
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commitdiff
2013-08-28
Daniel Barton
RNAalifoldClient updated to be more like AAConClient...
tree
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commitdiff
2013-08-27
Daniel Barton
JAL-1358 jalview displays some RNA struture annotation...
tree
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commitdiff
2013-08-27
Jim Procter
Merge branch 'JAL-1359_patch' into develop
tree
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commitdiff
2013-08-27
Jim Procter
JAL-1359 simpler logic for deciding if all threads...
tree
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commitdiff
2013-08-27
Daniel Barton
Merge remote-tracking branch 'origin/Release_2_8_1_Bran...
tree
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commitdiff
2013-08-27
Daniel Barton
JAL-1358 RNAStructExportImport test file mirrors Disord...
tree
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commitdiff
2013-08-27
Jim Procter
Merge branch 'JAL-1332_regression' into develop
tree
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commitdiff
2013-08-27
Jim Procter
JAL-1332 regression from 7ce72ca7fadf35a249427ecb836b22...
tree
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commitdiff
2013-08-27
Jim Procter
JAL-1332 - defer SSM provision to root provider for...
tree
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commitdiff
2013-08-27
Daniel Barton
JAL-1358 Just the eclipse project/classpath files so...
tree
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commitdiff
2013-08-14
Jim Procter
JAL-1354 replacement of bare strings in GUI dialogs...
tree
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commitdiff
2013-07-12
Jim Procter
Merge branch 'JAL-1347' into develop
tree
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commitdiff
2013-07-12
Jim Procter
JAL-1347 RNA Structure consensus follows the alignment...
tree
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commitdiff
2013-07-12
Jim Procter
JAL-1347 flow control for display of profile data is...
tree
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commitdiff
2013-07-11
Jim Procter
Merge branch 'JAL-1347' into develop
tree
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commitdiff
2013-07-11
Jim Procter
JAL-1347 identify and set rendering settings for consen...
tree
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commitdiff
2013-07-11
Jim Procter
JAL-1347 refactor logic for setting display flags for...
tree
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commitdiff
2013-07-11
Jim Procter
JAL-1347 make it efficient to call getConsensus to...
tree
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commitdiff
2013-07-07
Jim Procter
Merge branch 'develop' into develop_m2_8_1_2
tree
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commitdiff
2013-07-07
Jim Procter
Merge branch 'structures/JAL-1016' into develop
tree
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commitdiff
2013-07-07
Jim Procter
JAL-1345 - set nSeconds arg for chemapps.stolaf.edu...
tree
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commitdiff
2013-07-07
Jim Procter
JAL-1016 Instruct user to report situations where the...
tree
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commitdiff
2013-07-07
Jim Procter
JAL-1332 make SSM context discovery safer (particularly...
tree
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commitdiff
2013-07-07
Jim Procter
JAL-583 refactor todo about separating code to construc...
tree
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commitdiff
2013-07-07
Jim Procter
fix for JAL-1016 - wait around until we have a complete...
tree
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commitdiff
2013-07-07
Jim Procter
JAL-1016 - do our assertions immediatly
tree
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commitdiff
2013-06-23
Jim Procter
Merge branch 'bug/JAL-1230' into Release_2_8_Branch
tree
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commitdiff
2013-06-23
Jim Procter
Merge branch 'bug/JAL-1230' into develop
tree
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commitdiff
2013-06-23
Jim Procter
JAL-1230 update alignment state for annotation edits...
tree
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commitdiff
2013-06-23
Jim Procter
JAL-1230 proxy method for synchronising internal Alignm...
tree
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commitdiff
2013-06-23
Jim Procter
JAL-1230 simplify initialisation of consensus, conserva...
tree
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commitdiff
2013-06-23
Jim Procter
Merge branch 'develop' into develop_m2_8_1_2
tree
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commitdiff
2013-06-23
Jim Procter
Merge branch 'bug/JAL-1230' into Release_2_8_Branch
tree
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commitdiff
2013-06-23
Jim Procter
Merge branch 'bug/JAL-1230' into develop
tree
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commitdiff
2013-06-23
Jim Procter
Merge commit '72c628b' into develop
tree
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commitdiff
2013-06-23
Jim Procter
Merge commit '72c628b' into Release_2_8_Branch
tree
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commitdiff
2013-06-22
Jim Procter
Merge branch 'feature/JAL-1330' into develop
tree
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commitdiff
2013-06-22
Jim Procter
JAL-1330 pick primary seqeunce data source for authorit...
tree
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commitdiff
2013-06-21
Jim Procter
JAL-1230 comment unused code to avoid NPE
tree
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commitdiff
2013-06-21
Jim Procter
JAL-1327 TODO
tree
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commitdiff
2013-06-21
Jim Procter
JAL-1326 JAL-1327 update all graphline thresholds with...
tree
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commitdiff
2013-06-21
Jim Procter
JAL-1241 - generate colour for all annotation values...
tree
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commitdiff
2013-06-21
Jim Procter
Merge branch 'develop' into develop_m2_8_1_2
tree
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commitdiff
2013-06-21
Jim Procter
Merge branch 'JAL-1294_iupredexportimport' into develop
tree
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commitdiff
2013-06-21
Jim Procter
JAL-1325 JAL-1294 resolve SEQUENCE_REF and GROUP_REF...
tree
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commitdiff
2013-06-21
Jim Procter
JAL-1294 JAL-1325 store graphline for individual annota...
tree
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commitdiff
2013-06-21
Jim Procter
JAL-1294 JAL-1325 bugfix equals
tree
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commitdiff
2013-06-21
Jim Procter
JAL-1294 JAL-1325 test annotation threshold line equiva...
tree
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commitdiff
2013-06-21
Jim Procter
Merge branch 'develop' into develop_m2_8_1_2
tree
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commitdiff
2013-06-21
Jim Procter
Merge branch 'JAL-1321_jws2_tooltips' into develop
tree
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commitdiff
2013-06-21
Jim Procter
JAL-1127 set option widgets to service defaults only...
tree
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commitdiff
2013-06-19
Jim Procter
JAL-1240 avoid NPE when source has no proxy available
tree
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commitdiff
2013-06-19
Jim Procter
Merge branch 'develop' into develop_m2_8_1_2
tree
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commitdiff
2013-06-19
Jim Procter
Merge branch 'JAL-1321_jws2_tooltips' into develop
tree
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commitdiff
2013-06-18
Jim Procter
JAL-1320 ascending alphabetical order
tree
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commitdiff
2013-06-18
Jim Procter
JAL-1320 preserve option/parameter order with LinkedHashMap
tree
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commitdiff
2013-06-18
Jim Procter
JAL-1320 sort options and parameters according to their...
tree
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commitdiff
2013-06-18
Jim Procter
typo
tree
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commitdiff
2013-06-18
Jim Procter
JAL-1321 don't show a tooltip for empty strings
tree
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commitdiff
2013-06-18
Jim Procter
JAL-674 fix the mapping generation algorithm
tree
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commitdiff
2013-06-18
Jim Procter
Merge branch 'menard' into develop_m2_8_1_2
tree
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commitdiff
2013-06-18
Jim Procter
Merge branch 'develop' into develop_m2_8_1_2
tree
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commitdiff
2013-06-18
Jim Procter
JAL-674 - avoid java.util.ConcurrentModificationExcepti...
tree
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commitdiff
2013-06-17
Jim Procter
Merge branch 'JAL-1319_jronn_npe' into develop
tree
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commitdiff
2013-06-17
Jim Procter
JAL-1319 (blacklist fix) check for presence of a score...
tree
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commitdiff
2013-06-17
Jim Procter
Merge branch 'JAL-1312_ambiguity_na' into develop
tree
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commitdiff
2013-06-17
Jim Procter
JAL-1027 fix errors in alternative codon table
tree
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commitdiff
2013-06-17
Jim Procter
JAL-1027 use alternative codon table in ResidueProperti...
tree
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commitdiff
2013-06-17
Jim Procter
JAL-1035 option to allow 'STOP' codon to translate...
tree
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commitdiff
2013-06-17
Jim Procter
JAL-1312 patch for regression noticed after patch to...
tree
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commitdiff
2013-06-17
Jim Procter
JAL-1312 rewrite of code for first reported exception...
tree
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commitdiff
2013-06-17
Jim Procter
JAL-1312 more helpful error message when translation...
tree
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commitdiff
2013-06-17
Jim Procter
JAL-529 - IUBMB nucleotide ambiguity codes and programm...
tree
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commitdiff
2013-06-17
Jim Procter
JAL-1318 - route warnings to stderr (need to find a...
tree
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commitdiff
2013-06-17
Jim Procter
JAL-1318 avoid failure if SequenceI objects don't have...
tree
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commitdiff
2013-06-17
Jim Procter
JAL-966 avoid using java.util.Vector
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commitdiff
next