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JAL-2629 remove annotation when exporting for hmmbuild
[jalview.git]
/
src
/
jalview
/
2017-05-02
Jim Procter
JAL-1632 enable/disable CalculationChooser buttons...
tree
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commitdiff
2017-05-02
Jim Procter
JAL-1632 compare size of input against minimums for...
tree
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commitdiff
2017-05-02
Jim Procter
JAL-1632 OK->Calculate, Cancel->Close buttons
tree
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commitdiff
2017-05-02
Jim Procter
JAL-1632 removed ‘tree’ option and changed dialog layout
tree
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commitdiff
2017-05-02
gmungoc
JAL-2447 EXPERIMENTAL preference (option in Tools menu)
features/JAL-2447experimentalFlag
tree
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commitdiff
2017-05-02
Jim Procter
Merge branch 'develop' into features/JAL-2393customMatrices
tree
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commitdiff
2017-05-02
Jim Procter
Merge branch 'bug/JAL-2424getVisibleContigs' into develop
tree
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commitdiff
2017-05-02
gmungoc
JAL-2499 inlined two 1-line methods
tree
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commitdiff
2017-05-02
gmungoc
JAL-2499 JAL-2403 push 'configure for view' inside...
tree
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commitdiff
2017-05-02
gmungoc
Merge branch 'develop' into features/JAL-2393customMatrices
tree
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commitdiff
2017-05-02
kiramt
JAL-2491 first addition of new event
tree
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commitdiff
2017-05-01
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2017-05-01
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2017-05-01
tcofoegbu
JAL-2482 bug fix
tree
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commitdiff
2017-05-01
gmungoc
JAL-2489 JAL-2371 reinstate calls to
tree
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commitdiff
2017-05-01
tcofoegbu
JAL-2465 missed commit for refactore renaming of getPdb...
tree
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commitdiff
2017-05-01
tcofoegbu
JAL-2465 bugfix and rerefactor renamed getPdbFile(...
tree
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commitdiff
2017-05-01
tcofoegbu
JAL-2376 copied out patch from Phyre branch
tree
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commitdiff
2017-04-28
gmungoc
Merge branch 'develop' into features/JAL-2393customMatrices
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 use constant for preference token
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 consensus calculation doesn’t depend on occupa...
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 desktop preferences for occupancy
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 showOccupancy applet parameter and SHOW_OCCUPA...
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 only create and add occupancy row to alignment...
tree
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commitdiff
2017-04-27
Jim Procter
JAL-2494 fix: updated behaviour for SequenceGroup.findA...
tree
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commitdiff
2017-04-27
Jim Procter
JAL-2494 fixed behaviour for null parameters in line...
tree
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commitdiff
2017-04-27
Jim Procter
JAL-2494 javadoc for AnnotatedCollectionI.findAnnotations
tree
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commitdiff
2017-04-27
Jim Procter
JAL-2432 desktop: filter/select columns by threshold...
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 JAL-2432 code tidy
tree
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commitdiff
2017-04-27
Jim Procter
JAL-2432 left justify value shown after adjusting thres...
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 JAL-2432 percentile filter for select/hide...
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 shade occupancy from light grey to black for...
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 don’t show symbol counts under histogram ...
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 occupancy row has a space below it for counts
tree
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commitdiff
2017-04-26
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-04-26
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-04-26
kiramt
Merge remote-tracking branch 'origin/features/JAL-2388h...
tree
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commitdiff
2017-04-26
kiramt
JAL-2388 last separation of hidden columns/col selection
tree
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commitdiff
2017-04-26
kiramt
JAL-2388 Tidies and unit tests
tree
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commitdiff
2017-04-25
kiramt
JAL-2388 Missed file from previous commit
tree
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commitdiff
2017-04-25
kiramt
JAL-2388 Reverted and re-did applet changes
tree
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commitdiff
2017-04-25
kiramt
JAL-2388 Tidies and other corrections so applet compiles
tree
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commitdiff
2017-04-25
kiramt
JAL-2388 And corrected OverviewCanvas for applet
tree
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commitdiff
2017-04-25
kiramt
JAL-2388 Updated applet to show/hide hidden regions...
tree
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commitdiff
2017-04-25
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2017-04-25
tcofoegbu
JAL-2489 bug fix
tree
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commitdiff
2017-04-25
kiramt
JAL-2388 Working hidden regions hide/show in desktop
tree
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commitdiff
2017-04-24
gmungoc
JAL-2487 remove redundant refreshGUI to minimise thread...
tree
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commitdiff
2017-04-24
kiramt
Merge remote-tracking branch
tree
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commitdiff
2017-04-24
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-04-24
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-04-24
kiramt
JAL-2388 Finished split of hidden columns and selected...
tree
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commitdiff
2017-04-24
gmungoc
Merge branch 'develop' into features/JAL-2393customMatrices
tree
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commitdiff
2017-04-24
gmungoc
JAL-2424 final contig now an inclusive range
bug/JAL-2424getVisibleContigs
tree
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commitdiff
2017-04-24
kiramt
JAL-2439 Fixed opposite out-by-one problem in wrapped...
tree
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commitdiff
2017-04-24
kiramt
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2017-04-24
kiramt
JAL-2439 Fix to hidden column marker being one row...
tree
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commitdiff
2017-04-24
kiramt
JAL-2388 Hidden cols separated from column selection...
tree
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commitdiff
2017-04-21
gmungoc
JAL-2423 tweak tree panel title, add Spanish text
tree
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commitdiff
2017-04-21
gmungoc
Merge branch 'develop' into features/JAL-2393customMatrices
tree
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commitdiff
2017-04-21
tcofoegbu
JAL-2485 Bug fix to filter out uniprot response header...
tree
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commitdiff
2017-04-21
kiramt
JAL-2388 Tidies
tree
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commitdiff
2017-04-21
kiramt
JAL-2388 Make sure resizing still works
tree
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commitdiff
2017-04-21
kiramt
JAL-2388 Alignment col and row collections with iterators
tree
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commitdiff
2017-04-19
gmungoc
JAL-2435 mirror font changes with middle mouse drag
tree
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commitdiff
2017-04-19
gmungoc
Merge branch 'develop' into features/JAL-2435splitScree...
tree
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commitdiff
2017-04-19
tcofoegbu
JAL-2482 added null check
tree
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commitdiff
2017-04-19
kiramt
Merge remote-tracking branch 'origin/develop' into
tree
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commitdiff
2017-04-18
tcofoegbu
JAL-2482 Bugfix
tree
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commitdiff
2017-04-12
gmungoc
JAL-1632 removed check for aligned sequences for Tree...
tree
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commitdiff
2017-04-12
gmungoc
JAL-1632 remove unused check for sequences aligned
tree
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commitdiff
2017-04-12
gmungoc
JAL-2403 ensure array held in Matrix is immutable
tree
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commitdiff
2017-04-12
gmungoc
JAL-2403 public static methods to convert distance...
tree
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commitdiff
2017-04-12
gmungoc
JAL-1632 one PCA/Tree per panel, closed when panel...
tree
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commitdiff
2017-04-11
tcofoegbu
Pull from develop
features/JAL-2473_set-minimium-dimensions
tree
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commitdiff
2017-04-11
gmungoc
JAL-2403 improved ScoreModelI hierarchy as per Kira...
tree
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commitdiff
2017-04-11
tcofoegbu
JAL-2473 removed unused fields in JalviewDialog
tree
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commitdiff
2017-04-11
gmungoc
JAL-2428 Javadoc
tree
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commitdiff
2017-04-11
gmungoc
Merge branch 'develop' into features/JAL-2393customMatrices
tree
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commitdiff
2017-04-10
gmungoc
JAL-2403 unit tests for PCA.computeSimilarity, signatur...
tree
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commitdiff
2017-04-10
tcofoegbu
Merge branch 'bug/JAL-2255_seq-fetcher-broken-on-linux...
tree
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commitdiff
2017-04-10
tcofoegbu
JAL-2255 Bug fix
bug/JAL-2255_seq-fetcher-broken-on-linux
tree
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commitdiff
2017-04-10
tcofoegbu
Merge branch 'develop' into bug/JAL-2255_seq-fetcher...
tree
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commitdiff
2017-04-10
gmungoc
JAL-2403 removed remaining jvCalcMode references from PCA
tree
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commitdiff
2017-04-10
gmungoc
Merge branch 'develop' into features/JAL-2393customMatrices
tree
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commitdiff
2017-04-10
tcofoegbu
JAL-2473 added improvement to apply default / custom...
tree
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commitdiff
2017-04-10
gmungoc
JAL-2361 option to save on OK of changed named colour...
tree
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commitdiff
2017-04-09
gmungoc
JAL-2393 remove unused commented code
tree
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commitdiff
2017-04-07
gmungoc
JAL-2393 code tidying for review comments
tree
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commitdiff
2017-04-07
gmungoc
Merge branch 'develop' into features/JAL-2393customMatrices
tree
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commitdiff
2017-04-06
gmungoc
JAL-2361 make a modified saved scheme the backout check...
tree
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commitdiff
2017-04-05
gmungoc
JAL-2384 JAL-2371 update ResidueShader on change of...
tree
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commitdiff
2017-04-05
gmungoc
JAL-2361 simplify constructors, select unsaved but...
tree
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commitdiff
2017-04-05
gmungoc
JAL-2361 apply any saved changes to current colour...
tree
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commitdiff
2017-04-03
gmungoc
Merge branch 'develop' into bug/JAL-2314
tree
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commitdiff
2017-04-03
gmungoc
Merge branch 'develop' into bug/JAL-2461
bug/JAL-2461
tree
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commitdiff
2017-04-03
gmungoc
JAL-2435 further adjustments to behaviour in split...
tree
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commitdiff
2017-04-03
gmungoc
Merge branch 'develop' into features/JAL-2435splitScree...
tree
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commitdiff
2017-03-31
gmungoc
JAL-2405 additional checks for circular reference in...
tree
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commitdiff
2017-03-31
gmungoc
Merge branch 'develop' into bug/JAL-2431splitFrameNewView
bug/JAL-2431splitFrameNewView
tree
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commitdiff
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