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JAL-4134 double click to select column groups
[jalview.git]
/
src
/
jalview
/
2023-01-24
James Procter
Merge branch 'develop' (JAL-4102 2.11.2.6 patch release...
features/r2_11_2_alphafold/JAL-2349_JAL-3855
tree
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commitdiff
2023-01-23
Ben Soares
JAL-629 Attempts to add PAE to structure. --headless...
tree
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commitdiff
2023-01-20
Jim Procter
Merge branch 'patch/JAL-4114_updated_3dbeacons_api...
tree
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commitdiff
2023-01-20
Jim Procter
JAL-4114 model_page_url not required in v2.0 response
patch/JAL-4114_updated_3dbeacons_api
tree
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commitdiff
2023-01-20
Jim Procter
Merge branch 'patch/JAL-4114_updated_3dbeacons_api...
tree
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commitdiff
2023-01-20
Jim Procter
Merge branch 'patch/Release_2_11_2_6_Branch' into develop
tree
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commitdiff
2023-01-20
Jim Procter
JAL-2353 primary ref candidates that should be promoted...
patch/Release_2_11_2_6_Branch
tree
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commitdiff
2023-01-20
Jim Procter
JAL-4114 only rank model qualities that are computed...
tree
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commitdiff
2023-01-20
Jim Procter
JAL-4114 alphafold now marked as AB-INITIO so adjust...
tree
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commitdiff
2023-01-20
Jim Procter
JAL-4114 additional warnings when PDBe doesn’t return...
tree
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commitdiff
2023-01-20
Jim Procter
JAL-4114 patch REST client for changed JSON schema...
tree
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commitdiff
2023-01-20
Jim Procter
JAL-4114 formatting
tree
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commitdiff
2023-01-18
Ben Soares
JAL-629 make sequence id key 'seqid'
tree
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commitdiff
2023-01-17
Ben Soares
JAL-3416 No longer needed
tree
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commitdiff
2023-01-17
Ben Soares
Merge branch 'develop' into merge/JAL-1988_JAL-3772...
tree
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commitdiff
2023-01-16
Ben Soares
JAL-3416 More tweaking of FlatLaf. Problem with macOS...
tree
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commitdiff
2023-01-11
Ben Soares
JAL-1988 JAL-3772 Mark the _default_ STARTUP_FILE as...
tree
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commitdiff
2023-01-11
Ben Soares
JAL-629 refactoring TFType. Remove i18n identification...
tree
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commitdiff
2023-01-06
Ben Soares
JAL-3416 More explicit setting of FlatLaf macOS theme
tree
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commitdiff
2023-01-06
Ben Soares
JAL-3416 Upgraded FlatLaf to 3.0 and added macOS theme...
tree
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commitdiff
2023-01-06
Ben Soares
JAL-3416 remove a missed panel titlebar icon in TreePanel
tree
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commitdiff
2022-12-19
Ben Soares
JAL-629 Add image output and quit
tree
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commitdiff
2022-12-15
Ben Soares
JAL-629 move SubId to more logical place. Attempt remov...
tree
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commitdiff
2022-12-14
Ben Soares
JAL-629 Open Structure Viewer from cmdline
tree
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commitdiff
2022-12-09
Ben Soares
JAL-629 null check, fixed tests!
tree
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commitdiff
2022-12-08
Ben Soares
JAL-629 fix opening files
tree
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commitdiff
2022-12-08
Ben Soares
JAL-629 stray code deleted
tree
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commitdiff
2022-12-08
Ben Soares
JAL-629 Allow attachment of pAE file to a particular...
tree
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commitdiff
2022-12-05
Ben Soares
JAL-629 implementation of --tempfac options
tree
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commitdiff
2022-11-30
Ben Soares
JAL-4101 Updated DEFAULT_RFAM_BASEURL
tree
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commitdiff
2022-11-30
Jim Procter
JAL-2353 patch for Ensembl refs from uniprot - needs...
tree
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commitdiff
2022-11-29
Ben Soares
JAL-4101 Updated DEFAULT_RFAM_BASEURL
tree
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commitdiff
2022-11-23
Ben Soares
JAL-629 Doing things with the command line arguments
tree
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commitdiff
2022-11-16
Ben Soares
Merge branch 'improvement/JAL-3416_default_to_LIVE_DRAG...
tree
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commitdiff
2022-11-16
Ben Soares
JAL-3416 make flatlaf default for linux
improvement/JAL-3416_default_to_LIVE_DRAG_MODE_for_flatlaf
tree
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commitdiff
2022-11-16
Ben Soares
JAL-4019 finalised a boolean option and tidied some...
tree
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commitdiff
2022-11-14
Ben Soares
JAL-4019 Make diagnostic message debug level
tree
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commitdiff
2022-11-13
Ben Soares
JAL-4019 small but important corrections to array order...
tree
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commitdiff
2022-11-13
Ben Soares
JAL-4019 improvement to short sequence nucleotide detec...
tree
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commitdiff
2022-11-10
Ben Soares
JAL-4019 Nucleotide Ambiguity Colour Scheme added....
tree
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commitdiff
2022-11-09
Ben Soares
JAL-3416 Add necessary logo to non-internal Frames
tree
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commitdiff
2022-11-09
Ben Soares
Merge branch 'improvement/JAL-3416_default_to_LIVE_DRAG...
tree
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commitdiff
2022-11-09
Ben Soares
JAL-3416 Add necessary logo to non-internal Frames
tree
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commitdiff
2022-11-09
Ben Soares
Merge branch 'improvement/JAL-3416_default_to_LIVE_DRAG...
tree
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commitdiff
2022-11-09
Ben Soares
JAL-3416 Remove all JFrame/JInternalFrame icons (set...
tree
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commitdiff
2022-11-09
Ben Soares
Merge branch 'bug/JAL-1988_JAL-3772_improved_quit_handl...
tree
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commitdiff
2022-11-09
Ben Soares
JAL-1988 JAL-3772 Test for FORCE_QUIT whilst saving...
bug/JAL-1988_JAL-3772_improved_quit_handling
tree
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commitdiff
2022-11-08
Ben Soares
Merge branch 'bug/JAL-1988_JAL-3772_improved_quit_handl...
tree
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commitdiff
2022-11-08
Ben Soares
JAL-1988 JAL-3776 Formatting JvOptionPane
tree
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commitdiff
2022-11-08
Ben Soares
JAL-1988 JAL-3772 Fixes highlighted by tests
tree
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commitdiff
2022-11-04
Ben Soares
JAL-3416 Added logoIcon to quit (and potentially other...
tree
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commitdiff
2022-11-04
Ben Soares
JAL-1998 JAL-3772 JAL-3416 Merge conflict resolution...
tree
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commitdiff
2022-11-03
Ben Soares
JAL-3416 File Chooser iconified, JvOptionPanes iconifie...
tree
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commitdiff
2022-11-03
Jim Procter
JAL-3855 JAL-4095 simple picking of ranges adjacent...
tree
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commitdiff
2022-11-03
Ben Soares
JAL-1988 JAL-3772 Allow other window closing dialogs...
tree
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commitdiff
2022-11-03
Ben Soares
JAL-3416 More JInternalFrame icons
tree
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commitdiff
2022-11-03
Ben Soares
JAL-1988 JAL-3772 Tidying of unspecified Callable decla...
tree
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commitdiff
2022-11-03
Ben Soares
JAL-3416 Start to add JInternalFrame icons (to replace...
tree
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commitdiff
2022-11-02
Ben Soares
JAL-1988 JAL-3772 Moving packages to somewhere more...
tree
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commitdiff
2022-11-01
Ben Soares
JAL-3416 set flatlaf default drag mode to LIVE_DRAG_MODE
tree
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commitdiff
2022-11-01
Ben Soares
JAL-1988 JAL-3772 Change default alignmentviewport...
tree
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commitdiff
2022-10-30
Jim Procter
JAL-2349 JAL-3855 bizarre resizing exception when resiz...
tree
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commitdiff
2022-10-30
Jim Procter
JAL-4091 lines to associate rows sharing same sequence...
tree
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commitdiff
2022-10-30
Jim Procter
JAL-2353 patch for Ensembl refs from uniprot - needs...
tree
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commitdiff
2022-10-29
Ben Soares
JAL-1988 JAL-3772 removed a debugging log line
tree
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commitdiff
2022-10-29
Jim Procter
JAL-4094 shift+click drag up/down to resize all annotat...
tree
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commitdiff
2022-10-29
Jim Procter
JAL-4091 - noodling about including the names for seque...
tree
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commitdiff
2022-10-29
Jim Procter
Merge branch 'features/JAL-4061_and_JAL-4062_findselect...
tree
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commitdiff
2022-10-28
Ben Soares
JAL-1988 JAL-3772 Removed 'Wait' button from waitDialog...
tree
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commitdiff
2022-10-28
Jim Procter
JAL-2349 allow contact matrix to provide labels for...
tree
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commitdiff
2022-10-28
Jim Procter
JAL-4086 commented out attempt to create measurement...
tree
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commitdiff
2022-10-28
Jim Procter
JAL-4089 use column selection to superpose if 4 or...
tree
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commitdiff
2022-10-28
Jim Procter
JAL-2961 centerViewOn command for structure viewers...
tree
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commitdiff
2022-10-28
Jim Procter
Merge branch 'features/r2_11_2_alphafold/JAL-2349_JAL...
tree
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commitdiff
2022-10-28
Ben Soares
JAL-1988 JAL-3772 Fixed wait between waitDialog appeara...
tree
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commitdiff
2022-10-27
Ben Soares
JAL-1988 Allow generic Container object in JvOptionPane...
tree
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commitdiff
2022-10-27
Ben Soares
Merge branch 'develop' into bug/JAL-1988_JAL-3772_impro...
tree
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commitdiff
2022-10-27
Ben Soares
JAL-4083 don't need globalUseScriptWait after all,...
bug/JAL-4083_exceptions_for_multiple_residue_highlights_in_jmol
tree
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commitdiff
2022-10-27
Ben Soares
JAL-4083 only set globalUseScriptWait if needed
tree
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commitdiff
2022-10-27
Ben Soares
JAL-4083 Use jmolViewer.scriptWait instead of jmolViewe...
tree
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commitdiff
2022-10-26
Jim Procter
JAL-4086 quick and dirty mouseovers on ruler highlighti...
tree
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commitdiff
2022-10-26
Ben Soares
Merge branch 'features/r2_11_2_alphafold/JAL-2349_JAL...
tree
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commitdiff
2022-10-25
Ben Soares
JAL-3772 silly NPE error fixed
tree
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commitdiff
2022-10-25
Ben Soares
JAL-3416 Making FlatLaF default for macs due to a probl...
tree
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commitdiff
2022-10-24
Ben Soares
JAL-1988 JAL-3772 wait timer working first time but...
tree
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commitdiff
2022-10-24
Ben Soares
JAL-1988 JAL-3772 Non-blocking modal dialogs for unsave...
tree
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commitdiff
2022-10-22
Jim Procter
JAL-2349 JAL-3855 highlight residues associated with...
tree
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commitdiff
2022-10-21
Jim Procter
JAL-2349 JAL-3855 fix failing tests
tree
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commitdiff
2022-10-21
Jim Procter
JAL-2349 JAL-3855 experiment masking hidden columns...
tree
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commitdiff
2022-10-21
Jim Procter
JAL-4033 - heuristic threshold for pAE matrix - mark...
tree
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commitdiff
2022-10-20
Jim Procter
JAL-2349 formatting/pick correct exception
tree
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commitdiff
2022-10-20
Jim Procter
JAL-2349 JAL-3855 off by one and daft return
tree
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commitdiff
2022-10-20
Jim Procter
JAL-2349 avoid div-by-zero when annotation height is...
tree
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commitdiff
2022-10-20
Jim Procter
JAL-2349 JAL-3855 adapt renderer for AlignmentI.getCont...
tree
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commitdiff
2022-10-20
Jim Procter
JAL-2349 JAL-3855 ContactListI.getPosition() to recover...
tree
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commitdiff
2022-10-20
Jim Procter
JAL-2349 JAL-3855 experimenting with filtering columns...
tree
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commitdiff
2022-10-20
Jim Procter
JAL-3855 JAL-2349 AlignmentI.getContactList takes care...
tree
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commitdiff
2022-10-20
Jim Procter
JAL-4033 fix drag selections and distinguish row/column...
tree
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commitdiff
2022-10-20
Jim Procter
JAL-2349 (still buggy) interactive selection - time...
tree
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commitdiff
2022-10-20
Jim Procter
JAL-2349 tooltip reports value from contact range
tree
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commitdiff
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