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JAL-4245 Return null from getRootDataset if no dataset
[jalview.git]
/
src
/
jalview
/
2022-07-24
Ben Soares
JAL-4034 add round corners to 3DB confirmation button...
tree
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commitdiff
2022-07-22
Ben Soares
JAL-4036 Changes made from code review CR-JAL-265
tree
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commitdiff
2022-07-22
Ben Soares
JAL-4036 Add getDbName to the GFTSPanelI and add an...
tree
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commitdiff
2022-07-22
Ben Soares
JAL-4036 removing the query field code from the dropdow...
tree
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commitdiff
2022-07-21
Ben Soares
JAL-4036 Don't autosearch changing index when autosearc...
tree
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commitdiff
2022-07-21
Ben Soares
JAL-4036 add search fieldname to dropdown list
tree
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commitdiff
2022-07-21
Ben Soares
JAL-4036 New configuration, target and pagination proce...
tree
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commitdiff
2022-07-20
Jim Procter
JAL-4045 - don't apply distribution dependent scale...
tree
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commitdiff
2022-07-15
Ben Soares
JAL-4034 Use the new non-modal JDialog for 3DBeacons...
tree
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commitdiff
2022-07-15
Ben Soares
JAL-4034 Allow request for non-modal JDialog, which...
tree
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commitdiff
2022-07-12
Ben Soares
JAL-4034 change to jalview property name
tree
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commitdiff
2022-07-12
Ben Soares
JAL-4034 showConfirmDialog works for both desktop and...
tree
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commitdiff
2022-07-11
Ben Soares
JAL-4034 Non-blocking 3D Beacons query after warning...
tree
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commitdiff
2022-07-11
Ben Soares
JAL-4034 allow a jalview_property to set the threshold...
tree
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commitdiff
2022-07-04
Jim Procter
JAL-4034 fix #3 change uniprot ref fetch dialog to...
tree
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commitdiff
2022-07-04
Jim Procter
JAL-4034 Fix #2 show an icon and a button to press...
tree
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commitdiff
2022-06-30
Jim Procter
JAL-4036 use the legacy endpoint (and report the FTS...
tree
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commitdiff
2022-06-28
Ben Soares
Merge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS...
tree
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commitdiff
2022-06-28
Ben Soares
JAL-1988 Don't put Quit in the File menu if there's...
tree
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commitdiff
2022-06-23
Ben Soares
Merge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS...
tree
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commitdiff
2022-06-23
Ben Soares
JAL-1988 Check for setHandler capability to avoid About...
tree
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commitdiff
2022-06-17
Ben Soares
JAL-3027 Avoid FlatLAF Desktop class is JalviewJS
tree
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commitdiff
2022-06-15
Jim Procter
JAL-1988 JAL-3416 avoid unnecessary static flag
tree
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commitdiff
2022-06-15
Jim Procter
JAL-3418 JAL-1988 don’t need java version check anymore
tree
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commitdiff
2022-06-13
Ben Soares
JAL-1988 Hack to ensure Quit dialog box is moved to...
tree
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commitdiff
2022-06-13
Ben Soares
JAL-1988 Moved APQHandlers to jalview.jbgui and called...
tree
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commitdiff
2022-06-13
Jim Procter
Merge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS...
tree
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commitdiff
2022-06-13
Ben Soares
JAL-3416 remove flat as default for linux
tree
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commitdiff
2022-06-13
Ben Soares
JAL-1988 JAL-3416 Using the flatlaf-extras About, Prefe...
tree
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commitdiff
2022-06-13
Ben Soares
JAL-3416 Added some mac specific FlatLAF settings....
tree
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commitdiff
2022-06-09
Jim Procter
Merge branch 'bug/JAL-4020_add_pymolwin_paths' into...
tree
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commitdiff
2022-06-09
Jim Procter
JAL-4026 ignore StructureSelectionManager events if...
tree
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commitdiff
2022-06-09
Jim Procter
JAL-4026 update the viewport’s wrapped width after...
tree
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commitdiff
2022-06-08
Jim Procter
Merge branch 'improvement/JAL-4023_snotation_for_trees...
tree
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commitdiff
2022-06-08
Jim Procter
Merge branch 'patch/JAL-4024_jumpScrollHang' into develop
tree
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commitdiff
2022-06-08
Jim Procter
JAL-4024 only render partially when new view overlaps...
patch/JAL-4024_jumpScrollHang
tree
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commitdiff
2022-06-07
Ben Soares
JAL-4020 class formatting
tree
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commitdiff
2022-06-07
Ben Soares
JAL-4020 added the \Scripts\pymol.exe. to the pathList
tree
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commitdiff
2022-06-06
Ben Soares
JAL-4020 Added the +2 arg for PyMOLWin.exe allowing...
tree
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commitdiff
2022-06-06
Ben Soares
JAL-4020 class reformatting
tree
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commitdiff
2022-06-06
Ben Soares
JAL-4020 Added path search for global installation...
tree
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commitdiff
2022-06-06
Jim Procter
JAL-4023 use %g for distances (scientific notation...
improvement/JAL-4023_snotation_for_trees
tree
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commitdiff
2022-06-06
Ben Soares
JAL-4020 Added search for PyMOLWinWithConsole.bat ...
tree
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commitdiff
2022-06-06
Jim Procter
JAL-4023 store distances as doubles
tree
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commitdiff
2022-05-12
Ben Soares
JAL-4014 4 gecos colour schemes added
tree
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commitdiff
2022-04-26
Mateusz Warowny
JAL-3878 Implement RNA Sec. Str. Pred. discovery for...
JAL-3878_ws-overhaul-3
tree
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commitdiff
2022-04-25
Mateusz Warowny
JAL-3878 log full worker repr in AlignCalcManager
tree
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commitdiff
2022-04-25
Mateusz Warowny
JAL-3878 Fix edit settings dialog prompting to discard...
tree
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commitdiff
2022-04-21
Ben Soares
Merge branch 'develop' into merge/JAL-3978+JAL-3553...
tree
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commitdiff
2022-04-21
Ben Soares
Merge branch 'develop' into task/JAL-3991_check_actual_...
tree
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commitdiff
2022-04-19
Jim Procter
Merge branch 'bug/JAL-3997_NPE_in_wrapped_mode' into...
tree
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commitdiff
2022-04-18
Jim Procter
JAL-3997 check for tooltip being null before checking...
bug/JAL-3997_NPE_in_wrapped_mode
tree
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commitdiff
2022-04-16
Jim Procter
JAL-3365 expand range of allowed DSSP secondary structu...
tree
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commitdiff
2022-04-11
Mateusz Warowny
JAL-3878 Use slivka client's URL when building web...
tree
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commitdiff
2022-04-11
Mateusz Warowny
JAL-3878 Add conservation service discovery
tree
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commitdiff
2022-04-11
Mateusz Warowny
JAL-3878 Build interactive services menu
tree
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commitdiff
2022-04-11
Mateusz Warowny
JAL-3878 Implement prot. seq. an. discovery for slivka.
tree
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commitdiff
2022-04-11
Mateusz Warowny
JAL-3878 Implement gui elements for annotation servicces
tree
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commitdiff
2022-04-11
Mateusz Warowny
JAL-3878 Create SlivkaAnnotationWSClient
tree
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commitdiff
2022-04-11
Mateusz Warowny
JAL-3878 Add full name getter to ActionI
tree
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commitdiff
2022-04-11
Mateusz Warowny
JAL-3878 Log status changes in annotation task
tree
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commitdiff
2022-04-11
Mateusz Warowny
JAL-3878 Allow null value for action name
tree
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commitdiff
2022-04-07
Mateusz Warowny
JAL-3878 Add action and task for annotation services
tree
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commitdiff
2022-04-06
Ben Soares
JAL-3991 Made info displayed only when needed (Java...
tree
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commitdiff
2022-04-06
Ben Soares
JAL-3991 Added information output about the slightly...
tree
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commitdiff
2022-04-06
Ben Soares
JAL-3991 JAVA_COMPILE_VERSION put into build_properties...
tree
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commitdiff
2022-04-05
Jim Procter
JAL-3981 patch tests and remove errant imports
tree
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commitdiff
2022-04-05
Jim Procter
JAL-3990 gradle spotlessApply
tree
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commitdiff
2022-04-05
Jim Procter
Merge branch 'bug/JAL-3980_JAL-3981_tooltips_sequence_d...
tree
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commitdiff
2022-04-05
Mateusz Warowny
JAL-3878 Introduce IProgressIndicator#addProgressBar
tree
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commitdiff
2022-04-05
Mateusz Warowny
JAL-3878 Fix method name to fireTaskRestarted
tree
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commitdiff
2022-04-05
Mateusz Warowny
JAL-3878 Add char[] constructor to Sequence
tree
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commitdiff
2022-04-05
Mateusz Warowny
JAL-3878 Make BaseJob setters public so they can be...
tree
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commitdiff
2022-04-05
Mateusz Warowny
JAL-3878 Add fullName to BaseAction class which combine...
tree
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commitdiff
2022-04-05
Mateusz Warowny
JAL-3878 Move status precedence list to JobStatus class
tree
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commitdiff
2022-04-05
Mateusz Warowny
JAL-3878 Add uid to WS Tasks
tree
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commitdiff
2022-03-31
Ben Soares
Merge branch 'develop' into improvement/JAL-3978_add_gr...
tree
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commitdiff
2022-03-31
Jim Procter
JAL-3985 formatting
tree
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commitdiff
2022-03-31
Jim Procter
JAL-3985 split PDB id queries into multiple queries...
tree
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commitdiff
2022-03-30
Jim Procter
Merge branch 'patch/JAL-3976_3dbeaconsnull' into develop
tree
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commitdiff
2022-03-30
Jim Procter
JAL-360 JAL-3975 update parent for text colour dialog...
tree
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commitdiff
2022-03-30
Ben Soares
JAL-360 JAL-3975 make AlignFrame the parent of FeatureE...
tree
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commitdiff
2022-03-28
Mateusz Warowny
JAL-3878 Patch preferences window to use new discoverer.
tree
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commitdiff
2022-03-28
Mateusz Warowny
JAL-3878 Fix discoverer being stuck on BEGIN state...
tree
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commitdiff
2022-03-25
Mateusz Warowny
JAL-3878 Add slivka discoverer and menu to AlignFrame
tree
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commitdiff
2022-03-25
Mateusz Warowny
JAL-3878 Change align frame added to desktop to correct one
tree
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commitdiff
2022-03-25
Mateusz Warowny
JAL-3878 Wrap infoPanel updates with SwingUtilities...
tree
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commitdiff
2022-03-25
Mateusz Warowny
JAL-3878 Fix re-alignment-capable services detection.
tree
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commitdiff
2022-03-25
Mateusz Warowny
JAL-3878 Clear services list on reload.
tree
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commitdiff
2022-03-25
Mateusz Warowny
JAL-3878 Fix task status precedence calculation
tree
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commitdiff
2022-03-25
Mateusz Warowny
JAL-3878 Fix NullPointerExceptions caused by nulls...
tree
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commitdiff
2022-03-25
Mateusz Warowny
JAL3878 Implement slivka service discoverer
tree
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commitdiff
2022-03-25
Mateusz Warowny
JAL-3878 Move action name initialization to its own...
tree
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commitdiff
2022-03-25
Jim Procter
JAL-3980 JAL-3979 TODOs
bug/JAL-3980_JAL-3981_tooltips_sequence_details
tree
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commitdiff
2022-03-25
Jim Procter
JAL-3980 defensive copy - inefficient but fixes bug
tree
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commitdiff
2022-03-25
Jim Procter
JAL-3981 Additional line breaks - sort of helps
tree
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commitdiff
2022-03-25
Mateusz Warowny
JAL-3878 Create ws2 client for slivka services
tree
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commitdiff
2022-03-25
Mateusz Warowny
JAL-3878 Add builders to each service parameter class
tree
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commitdiff
2022-03-24
Jim Procter
JAL-3981 strategic newlines to help speed up Java's...
tree
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commitdiff
2022-03-24
Mateusz Warowny
JAL-3878 Create service agnostic param datastore and set
tree
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commitdiff
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