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release property includes -b or -t to indicate what gets checked out
[jalview.git]
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src
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jalview
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2008-02-22
jprocter
typo for AXISLOGLEVEL constant
tree
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commitdiff
2008-02-22
jprocter
explicit quote of chaincode in errror message
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commitdiff
2008-01-29
jprocter
minor change to output of main method for testing file IO
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commitdiff
2008-01-29
jprocter
memory usage information and flag to indicate if warnin...
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commitdiff
2008-01-29
jprocter
add methods to read from current position of existing...
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commitdiff
2008-01-29
jprocter
ensure mark is set before identification is started.
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commitdiff
2008-01-29
jprocter
FileParse object can be re-used to read different files...
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commitdiff
2008-01-29
jprocter
flag to indicate if errors are raised as warning dialog...
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commitdiff
2008-01-29
jprocter
explicitly allow access to showMemoryUsage flag in...
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commitdiff
2008-01-29
jprocter
javadoc
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commitdiff
2008-01-29
jprocter
groovy scripts can be read from stdin
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commitdiff
2008-01-29
jprocter
reinstated proper case insensitive searching for both...
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commitdiff
2008-01-22
jprocter
timings and memory usage for reading in a file
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commitdiff
2008-01-22
jprocter
more efficient parsing of large files, do not create...
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commitdiff
2008-01-22
jprocter
ensured that seqeunce feature shift takes into account...
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commitdiff
2008-01-22
jprocter
new method to get map of sequence positions correspondi...
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commitdiff
2008-01-21
jprocter
fix regex for annotation subtype to use non-whitespace...
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commitdiff
2008-01-21
jprocter
javadoc and main method for testing file input routines
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commitdiff
2008-01-21
jprocter
javadoc
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commitdiff
2008-01-11
jprocter
added groovy argument for launching a groovy script...
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commitdiff
2008-01-11
jprocter
memory monitor, garbage collection and changed menu...
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commitdiff
2007-12-21
jprocter
uniprotxml format comment (ebi changed service parameter)
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commitdiff
2007-12-21
jprocter
further bugfix and annotation transfer for dna/protein...
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commitdiff
2007-12-21
jprocter
javadoc and bugfix
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commitdiff
2007-12-21
jprocter
sequence db fetcher and db reference validation/annotat...
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commitdiff
2007-12-21
jprocter
sequence db fetcher metadata for multiple sequence...
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commitdiff
2007-12-21
jprocter
temporary bugfix ?
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commitdiff
2007-12-21
jprocter
bugfix
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commitdiff
2007-12-21
jprocter
equivalence for transferring/updating references
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commitdiff
2007-12-21
jprocter
bugfixes
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commitdiff
2007-12-18
jprocter
incorrect colour-by-sequence when gaps are present...
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commitdiff
2007-12-13
jprocter
java 1.1 compatibility (again)
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commitdiff
2007-12-13
jprocter
java 1.1 compatibility (again)
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commitdiff
2007-11-30
jprocter
null pointer bugfix
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commitdiff
2007-11-30
jprocter
bugfixed MapList (must be propagated to vamsas version...
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commitdiff
2007-11-30
jprocter
javadoc and transferAnnotation method
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commitdiff
2007-11-30
jprocter
case insensitive matching of database ids
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commitdiff
2007-11-30
jprocter
case invariant matching of seqeunce feature to sequence...
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commitdiff
2007-11-28
jprocter
bugfix
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commitdiff
2007-11-24
jprocter
only show bootstrap values if they are valid!
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commitdiff
2007-11-16
jprocter
typo
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commitdiff
2007-11-16
jprocter
javadoc
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commitdiff
2007-11-16
jprocter
added generic method for adding new database proxies...
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commitdiff
2007-11-16
jprocter
refactored ebi soap client and AbstractSequenceFetcher...
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commitdiff
2007-11-16
jprocter
todo for sortbyPID operating on current selection rathe...
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commitdiff
2007-11-16
jprocter
javadoc
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commitdiff
2007-11-16
jprocter
refactor abstract sequence fetching and DBSource machin...
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commitdiff
2007-11-12
jprocter
crossrefs have properly updated pdbId lists
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commitdiff
2007-11-12
jprocter
javadoc and introduction of dasserver and fetchdas...
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commitdiff
2007-11-12
jprocter
added mechanism to initiate DAS feature fetching progra...
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commitdiff
2007-11-12
jprocter
public access to static getAlignFrames method.
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commitdiff
2007-11-12
jprocter
public method to indicate if there are progress bars...
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commitdiff
2007-11-12
jprocter
publicly accessible flag to indicate if a registry...
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commitdiff
2007-11-12
jprocter
bugfix for occasional race condition causing exception...
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commitdiff
2007-11-12
jprocter
comments
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commitdiff
2007-11-12
jprocter
begun adding string constants for source properties
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commitdiff
2007-11-12
jprocter
javadoc
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commitdiff
2007-11-08
jprocter
end must be greater than blockstart
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commitdiff
2007-11-08
jprocter
initialise treeCanvas before starting loading thread
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commitdiff
2007-11-07
jprocter
fix accidental breakage of annotation panel redraw...
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commitdiff
2007-11-07
jprocter
attempt to make fastPaint method thread safe
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commitdiff
2007-11-05
jprocter
refactored syncing of alignment sequences - still buggy
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commitdiff
2007-11-05
jprocter
vamsas connects and updates are threaded with a progres...
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commitdiff
2007-10-31
jprocter
javadoc
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commitdiff
2007-10-31
jprocter
rejiggered loadDataFile and parseFeatureFile so JNet...
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commitdiff
2007-10-31
jprocter
added bugfix todo
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commitdiff
2007-10-31
jprocter
concise files can now be read as a normal alignment...
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commitdiff
2007-10-31
jprocter
added a quieter bailout for cases when the featuresFile...
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commitdiff
2007-10-31
jprocter
factored out reference to parent alignFrame (so all...
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commitdiff
2007-10-31
jprocter
beginnings of view definition capability for annotation...
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commitdiff
2007-10-31
jprocter
javadoc
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commitdiff
2007-10-31
jprocter
error message associated with an alignment file loading...
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commitdiff
2007-10-31
jprocter
introduce new type to pass around featureRendererSettings
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commitdiff
2007-10-31
jprocter
nullpointer bug fix on consensus thread
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commitdiff
2007-10-31
jprocter
javadoc on webservice discovery method
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commitdiff
2007-10-31
jprocter
fix parsing of embl entries like S75919 which have...
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commitdiff
2007-10-29
jprocter
bugfix for alignments without aligned codon frames
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commitdiff
2007-10-28
jprocter
begin process of allowing for column selection in wrapp...
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commitdiff
2007-10-28
jprocter
fix display of hidden sequence markers in applet
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commitdiff
2007-10-27
jprocter
must do any modification to menus before they are embed...
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commitdiff
2007-10-27
jprocter
enabled platform dependent embedding of menuBar with...
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commitdiff
2007-10-27
jprocter
windowclose handler now calls EmbmenuFrame garbage...
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commitdiff
2007-10-27
jprocter
fixed bootstrap value rendering to occur only when...
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commitdiff
2007-10-27
jprocter
refactored embedded menu machinery
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commitdiff
2007-10-26
jprocter
add mac dependent use of embedded menu bar rather than...
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commitdiff
2007-10-26
jprocter
use new utility class for platform info
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commitdiff
2007-10-26
jprocter
new applet and application utility class for platform...
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commitdiff
2007-10-26
jprocter
fixed applet API calls so they operate on the embedded...
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commitdiff
2007-10-26
jprocter
updated client which allows XML validation flags to...
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commitdiff
2007-10-24
jprocter
thread for product retrieval
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commitdiff
2007-10-24
jprocter
ensure PDB ids are updated on the dataset sequence
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commitdiff
2007-10-24
jprocter
individual query error/exception report and bugfix
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commitdiff
2007-10-24
jprocter
add parsed PDB reference to sequences
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commitdiff
2007-10-24
jprocter
null pointer exception and warning for update of tree
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commitdiff
2007-10-24
jprocter
javadoc
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commitdiff
2007-10-15
jprocter
new features or newly shown group features are placed...
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commitdiff
2007-10-12
jprocter
added separator parameter with default of '|' to contro...
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commitdiff
2007-10-11
jprocter
remove conflict on javascript api
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commitdiff
2007-10-11
jprocter
static debug flag controlling output of excessive info...
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commitdiff
2007-10-11
jprocter
pass up the errormessage in the exception when a dataso...
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