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Reset ClustalX after removing gaps
[jalview.git]
/
src
/
jalview
/
2005-08-12
jprocter
fixed leafMapping bug for Id's like SequenceX (where...
tree
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commitdiff
2005-08-09
amwaterhouse
Cache.getDefault
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commitdiff
2005-08-09
amwaterhouse
Proxy server, default browser, multiple links added
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commitdiff
2005-08-09
amwaterhouse
cache.getDefault
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commitdiff
2005-08-09
amwaterhouse
Try/catch loading default icons
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commitdiff
2005-08-09
amwaterhouse
Splash screen is repainted when checking latest version
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commitdiff
2005-08-09
amwaterhouse
Handle multiple url links
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commitdiff
2005-08-09
amwaterhouse
Can give a name to new browser window
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commitdiff
2005-08-09
amwaterhouse
Properties file is used in preference to viewport/cache...
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commitdiff
2005-08-09
amwaterhouse
Edit/add/delete a sequence link
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commitdiff
2005-08-09
amwaterhouse
Applet handles multiple sequence links
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commitdiff
2005-08-03
amwaterhouse
Fix for user entering number in search window
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commitdiff
2005-08-03
amwaterhouse
Version 2.02
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commitdiff
2005-08-03
amwaterhouse
1 & -1
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commitdiff
2005-08-03
amwaterhouse
Trees aren't save in headless state in this version
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commitdiff
2005-08-03
amwaterhouse
Loading thread moved to io.FileLoader
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commitdiff
2005-08-03
amwaterhouse
Use Container to get fontMetrics
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commitdiff
2005-08-03
amwaterhouse
FileLoading removed from desktop
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commitdiff
2005-08-03
amwaterhouse
Can run headless=true
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commitdiff
2005-08-02
amwaterhouse
Use font.getName, not font.getFontName
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commitdiff
2005-07-29
amwaterhouse
Remove ref to ServletGUI
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commitdiff
2005-07-29
amwaterhouse
use 1 & -1 if start/end not specified
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commitdiff
2005-07-29
amwaterhouse
if endRes <1, calc the endRes
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commitdiff
2005-07-29
amwaterhouse
Correct label for end res in copy
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commitdiff
2005-07-18
amwaterhouse
Copy seq ordering bug fixed
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commitdiff
2005-07-11
amwaterhouse
Version changes
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commitdiff
2005-07-11
amwaterhouse
Must check if group.sequences are null in remove gaps
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commitdiff
2005-07-11
amwaterhouse
Consume if enter pressed
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commitdiff
2005-07-11
amwaterhouse
Listen for return key
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commitdiff
2005-07-11
amwaterhouse
check groupsize is non zero
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commitdiff
2005-07-11
amwaterhouse
setIconImage
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commitdiff
2005-07-11
amwaterhouse
Add test case if code version not found
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commitdiff
2005-07-11
amwaterhouse
this.installIcons
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commitdiff
2005-07-11
amwaterhouse
Release and build date methods changed
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commitdiff
2005-07-07
amwaterhouse
Runs if no files to open and -nodisplay is not used
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commitdiff
2005-07-07
amwaterhouse
press del to cut
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commitdiff
2005-07-07
amwaterhouse
delete markers from start to end
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commitdiff
2005-07-07
amwaterhouse
Remove all gaps must check jSize
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commitdiff
2005-07-06
amwaterhouse
Remove group if sequences are null
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commitdiff
2005-07-06
amwaterhouse
Help file url changed
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commitdiff
2005-07-06
amwaterhouse
dont add null group
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commitdiff
2005-07-06
amwaterhouse
Sequence to Uppercase before checksum
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commitdiff
2005-06-30
amwaterhouse
Formatting changes
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commitdiff
2005-06-30
amwaterhouse
Not used in Jalview
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commitdiff
2005-06-16
jprocter
renamed menu for jPred to Jnet.
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commitdiff
2005-06-16
jprocter
better clustalw reference
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commitdiff
2005-06-16
amwaterhouse
dont add sequence twice to new group
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commitdiff
2005-06-16
amwaterhouse
Sort Groups modified
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commitdiff
2005-06-16
amwaterhouse
dont convert to uppercase
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commitdiff
2005-06-16
amwaterhouse
textarea replaces textfield - can cut and paste sequenc...
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commitdiff
2005-06-16
amwaterhouse
remove gaps applies to selected area
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commitdiff
2005-06-15
amwaterhouse
use .jalview.uniprot.xml
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commitdiff
2005-06-15
amwaterhouse
Check colours not null
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commitdiff
2005-06-15
amwaterhouse
check colourscheme is not null
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commitdiff
2005-06-15
amwaterhouse
paintrefresher
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commitdiff
2005-06-15
amwaterhouse
add/remove updated
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commitdiff
2005-06-15
amwaterhouse
Column selection changed
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commitdiff
2005-06-15
amwaterhouse
REmove commented out lines
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commitdiff
2005-06-15
amwaterhouse
allow for fastpaint
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commitdiff
2005-06-15
amwaterhouse
add / remove editable columns
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commitdiff
2005-06-14
amwaterhouse
change name of uniprot file
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commitdiff
2005-06-14
amwaterhouse
add version
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commitdiff
2005-06-14
amwaterhouse
remove system.out
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commitdiff
2005-06-14
jprocter
pad-1 gaps fixed.
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commitdiff
2005-06-14
jprocter
slight modification to srs query so it takes both unipr...
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commitdiff
2005-06-14
jprocter
Arbitrary decision to keep friendly id name when readin...
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commitdiff
2005-06-14
amwaterhouse
update conservation colours after edit
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commitdiff
2005-06-14
amwaterhouse
ToolTip updated
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commitdiff
2005-06-14
amwaterhouse
add value to conservation mouseover
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commitdiff
2005-06-14
amwaterhouse
if seq is null, dont check pdb
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commitdiff
2005-06-14
amwaterhouse
mouse pressed moved to mouseclicked
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commitdiff
2005-06-14
amwaterhouse
Deselect sets annotationPanel activeres null
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commitdiff
2005-06-14
amwaterhouse
reset if clustalX colouring
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commitdiff
2005-06-14
amwaterhouse
Dont delete nextSeq
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commitdiff
2005-06-14
amwaterhouse
PaintRefresher must be sent alignment
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commitdiff
2005-06-14
amwaterhouse
super.paintComponent
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commitdiff
2005-06-14
amwaterhouse
Set background colour of applet RGB
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commitdiff
2005-06-14
amwaterhouse
protected now public
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commitdiff
2005-06-14
amwaterhouse
Double click to launch file browser
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commitdiff
2005-06-14
amwaterhouse
tooltips instant (hopefully)
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commitdiff
2005-06-14
amwaterhouse
No spaces allowed in sequence name
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commitdiff
2005-06-14
amwaterhouse
Load/Save trees
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commitdiff
2005-06-14
amwaterhouse
Returns TreePanel when opening Newick
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commitdiff
2005-06-14
amwaterhouse
Saves trees
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commitdiff
2005-06-13
jprocter
null pointer fix.
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commitdiff
2005-06-13
amwaterhouse
uses paintrefresher
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commitdiff
2005-06-13
amwaterhouse
clustal probs
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commitdiff
2005-06-13
amwaterhouse
quit saves screen size
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commitdiff
2005-06-13
amwaterhouse
Updates checkboxes on load
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commitdiff
2005-06-13
amwaterhouse
PaintRefresh changed
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commitdiff
2005-06-13
amwaterhouse
protected now public
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commitdiff
2005-06-13
amwaterhouse
Quit actionPerformed
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commitdiff
2005-06-13
amwaterhouse
Get colourScheme with seqs and width
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commitdiff
2005-06-10
amwaterhouse
SeqFetcher modified
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commitdiff
2005-06-10
amwaterhouse
remove imports
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commitdiff
2005-06-10
amwaterhouse
Fastpaint is false initially
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commitdiff
2005-06-10
jprocter
added logs.Castor.level
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commitdiff
2005-06-10
jprocter
added castor logger configuration.
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commitdiff
2005-06-10
amwaterhouse
Remove imports
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commitdiff
2005-06-10
amwaterhouse
set conservation/consensus in constructor
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commitdiff
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