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fix for JAL-2922 - update states all at once and then refresh
[jalview.git]
/
src
/
jalview
/
2018-02-27
Jim Procter
fix for JAL-2922 - update states all at once and then...
tree
|
commitdiff
2018-02-23
Jim Procter
Merge branch 'features/JAL-2885UniprotHttps' into relea...
tree
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commitdiff
2018-02-23
Jim Procter
JAL-2885 xfam https
features/JAL-2885UniprotHttps
tree
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commitdiff
2018-02-23
Jim Procter
JAL-2885 XFAM_DOMAIN->XFAM_BASEURL
tree
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commitdiff
2018-02-23
Jim Procter
JAL-2885 Ensembl* -> https
tree
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commitdiff
2018-02-23
Jim Procter
JAL-2885 ENSEMBL-DOMAIN -> ENSEMBL-BASEURL
tree
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commitdiff
2018-02-23
Jim Procter
JAL-2885 renamed base URL getter from getDomain..
tree
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commitdiff
2018-02-22
Jim Procter
Merge branch 'feature/JAL-984splitAdjuster' into releas...
tree
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commitdiff
2018-02-22
Jim Procter
JAL-984 ID width adjuster needs to be white !
tree
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commitdiff
2018-02-22
Jim Procter
Merge branch 'bug/JAL-2666' into releases/Release_2_10_...
tree
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commitdiff
2018-02-22
Jim Procter
Merge branch 'feature/JAL-984splitAdjuster' into releas...
tree
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commitdiff
2018-02-22
Jim Procter
JAL-984 remove all references to idwidth.gif and use...
tree
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commitdiff
2018-02-22
Jim Procter
Merge branch 'feature/JAL-984splitAdjuster' into releas...
tree
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commitdiff
2018-02-22
Jim Procter
JAL-294 remove unneeded paint() method
tree
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commitdiff
2018-02-22
Jim Procter
JAL-984 remove commented/unnecessary if clause
tree
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commitdiff
2018-02-21
Jim Procter
Merge branch 'bug/JAL-2778again' into releases/Release_...
tree
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commitdiff
2018-02-21
Jim Procter
JAL-2778 reinstate transparent windows to avoid ugly...
bug/JAL-2778again
tree
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commitdiff
2018-02-21
kiramt
JAL-2778 Adjust cursor changes in overview panel
tree
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commitdiff
2018-02-21
kiramt
JAL-2778 Revert back to old synchronisation
tree
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commitdiff
2018-02-13
Jim Procter
JAL-2780 JAL-2781 don’t create a mapping if sequence...
tree
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commitdiff
2018-02-13
Jim Procter
JAL-2780 JAL-2781 only create a mapping entry or write...
tree
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commitdiff
2018-02-13
Jim Procter
JAL-2781 JAL-2780 include sequence start number when...
tree
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commitdiff
2018-02-13
Jim Procter
JAL-2781 refactor ‘trim retrieved sequence’ preference...
tree
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commitdiff
2018-02-13
Jim Procter
JAL-2781 null local siftsClient variable if exception...
tree
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commitdiff
2018-02-13
Jim Procter
JAL-2781 refactor StructureSelectionManager.siftsClient...
tree
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commitdiff
2018-02-13
Jim Procter
JAL-2781 FIXME: value of sourceType parameter always...
tree
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commitdiff
2018-02-13
Jim Procter
JAL-2781 refactor possibly non-functional ‘extract...
tree
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commitdiff
2018-02-13
Jim Procter
JAL-2781 tidy up comments on getMapping/computeMapping
tree
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commitdiff
2018-02-12
Jim Procter
JAL-2780 JAL-2781 ahem - add a semicolon if there isn...
tree
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commitdiff
2018-02-11
Jim Procter
JAL-2781 use SIFTs mapping rather than maxChain AlignSe...
tree
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commitdiff
2018-02-11
Jim Procter
JAL-2780 JAL-2781 use PDBe numbering to map between...
tree
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commitdiff
2018-02-11
Jim Procter
JAL-2781 mark aligned positions via StructureMapping...
tree
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commitdiff
2018-02-11
Jim Procter
JAL-2780 JAL-2781 include a Mapping object in Structure...
tree
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commitdiff
2018-02-11
Jim Procter
JAL-2780 JAL-2781 UNASSIGNED positions marked as Intege...
tree
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commitdiff
2018-02-09
gmungoc
JAL-2789 avoid using transcript (with no UTR) as CDS...
bug/JAL-2666
tree
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commitdiff
2018-02-09
gmungoc
JAL-2789 code format changes only (before functional...
tree
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commitdiff
2018-02-09
gmungoc
JAL-2666 fix failure to scroll split alignment of height 1
tree
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commitdiff
2018-02-09
Jim Procter
Use the “PDBe” or “PDB” numbering (starts from 1, corre...
tree
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commitdiff
2018-02-09
Jim Procter
JAL-2780 JAL-2781 should always ensure SIFTS mappings...
tree
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commitdiff
2018-02-08
gmungoc
JAL-2666 basic initial fix for split screen scroll bug
tree
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commitdiff
2018-02-07
Jim Procter
JAL-2902 catch case where viewer is closed (therefore...
tree
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commitdiff
2018-02-07
Jim Procter
JAL-2902 thread off dialog close op to avoid deadlock...
tree
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commitdiff
2018-02-07
Jim Procter
JAL-2902 - isBusy and hasMapping methods so client...
tree
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commitdiff
2018-02-07
Jim Procter
JAL-2780 JAL-2781 fix javadoc in line with behaviour...
tree
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commitdiff
2018-02-07
Jim Procter
JAL-2780 JAL-2781 JAL-2902 refactor ‘OK’ action to...
tree
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commitdiff
2018-02-07
Jim Procter
JAL-2780 JAL-2781 don’t assume contiguous mapping to...
tree
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commitdiff
2018-02-05
Jim Procter
JAL-2780 JAL-2781 programmatically select structures...
tree
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commitdiff
2018-02-05
Jim Procter
JAL-2780 JAL-2871 only look up current table view once
tree
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commitdiff
2018-02-05
Jim Procter
JAL-2780 JAL-2781 - patch and first test for AlignmentI...
tree
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commitdiff
2018-02-05
kiramt
JAL-2788 possible adjustments to sequence accesses
tree
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commitdiff
2018-02-02
gmungoc
JAL-984 use cursor for drag regions to adjust annotatio...
tree
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commitdiff
2018-02-02
gmungoc
JAL-984 better behaved panel height adjuster
tree
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commitdiff
2018-01-26
kiramt
JAL-2778 try another way to draw sequences with reduced...
tree
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commitdiff
2018-01-26
kiramt
JAL-2778 tightened up use of resetAlignmentDims
tree
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commitdiff
2018-01-25
kiramt
JAL-2778 Tidy
tree
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commitdiff
2018-01-25
kiramt
JAL-2778 added JAL-2851 fix to avoid confusion
tree
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commitdiff
2018-01-25
kiramt
JAL-2778 Reinstate id width adjuster
tree
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commitdiff
2018-01-18
gmungoc
JAL-2810 JAL-2886 i18n
tree
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commitdiff
2018-01-18
gmungoc
JAL-2679 update query id to actual case of retrieved...
tree
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commitdiff
2018-01-17
gmungoc
JAL-2679 case-insensitive comparison of query and retri...
tree
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commitdiff
2018-01-16
gmungoc
JAL-2679 use object_type=Transcript for lookup of Paren...
tree
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commitdiff
2018-01-16
gmungoc
JAL-2885 uniprot now https, uniprot/ensembl/pfam/xfam...
tree
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commitdiff
2018-01-16
gmungoc
JAL-1270 JAL-2885 clear properties before load
tree
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commitdiff
2017-11-30
Jim Procter
JAL-2849 JAL-2863 file format preferences TODO
tree
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commitdiff
2017-11-30
Jim Procter
JAL-2849 fix
tree
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commitdiff
2017-11-28
Jim Procter
Merge branch 'bug/JAL-2859_uniprottowrongpdbid' into...
tree
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commitdiff
2017-11-28
Jim Procter
Merge branch 'bug/JAL-2740' into develop
tree
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commitdiff
2017-11-28
Jim Procter
Merge branch 'bug/JAL-2827' into develop
tree
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commitdiff
2017-11-28
Jim Procter
Merge branch 'bug/JAL-2842' into develop
tree
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commitdiff
2017-11-27
Jim Procter
JAL-2859 disambiguate with PDB ID if no file path
bug/JAL-2859_uniprottowrongpdbid
tree
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commitdiff
2017-11-23
kiramt
Merge branch 'develop' into bug/JAL-2851
bug/JAL-2851
tree
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commitdiff
2017-11-23
kiramt
JAL-2851 Fix merge error breaking vertical scrolling
tree
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commitdiff
2017-11-17
Jim Procter
JAL-2698 source code licencing
tree
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commitdiff
2017-11-17
Jim Procter
JAL-2698 Cached PDB Entries -> Cached Structures in...
tree
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commitdiff
2017-11-17
Jim Procter
Merge branch 'bug/JAL-2784' into develop
tree
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commitdiff
2017-11-17
Jim Procter
Merge branch 'bug/JAL-2821' into develop
tree
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commitdiff
2017-11-17
Jim Procter
Merge branch 'bug/JAL-2837' into develop
tree
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commitdiff
2017-11-17
kiramt
Merge branch 'develop' into bug/JAL-2837
bug/JAL-2837
tree
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commitdiff
2017-11-17
Jim Procter
Merge branch 'doc/JAL-2494_JAL-2828_mergefindAnnotation...
tree
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commitdiff
2017-11-17
kiramt
Merge branch 'develop' into bug/JAL-2837
tree
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commitdiff
2017-11-17
Jim Procter
Merge branch 'bug/JAL-2831' into develop
tree
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commitdiff
2017-11-16
Jim Procter
Merge branch 'bug/JAL-2829deleteCharsWithGaps' into...
tree
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commitdiff
2017-11-16
kiramt
JAL-2831 Removed unwanted hidden sequences checks
bug/JAL-2831
tree
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commitdiff
2017-11-16
kiramt
JAL-2842 remove infinite loop in cursor move
bug/JAL-2842
tree
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commitdiff
2017-11-15
kiramt
JAL-2831 Don't show cursor if position in hidden region
tree
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commitdiff
2017-11-15
kiramt
Merge branch 'bug/JAL-2811' into bug/JAL-2831
tree
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commitdiff
2017-11-15
kiramt
JAL-2811 Updated following review
bug/JAL-2811
tree
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commitdiff
2017-11-15
kiramt
JAL-2840 fix wrapped scrolling when using cursor at...
tree
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commitdiff
2017-11-15
kiramt
JAL-2834 JAL-2836 temporarily disabled wrapped mode...
tree
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commitdiff
2017-11-15
kiramt
JAL-2831 ported to applet
tree
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commitdiff
2017-11-14
kiramt
JAL-2831 tidies and tests
tree
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commitdiff
2017-11-14
kiramt
JAL-2831 tidy
tree
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commitdiff
2017-11-14
kiramt
Merge branch 'bug/JAL-2811' into bug/JAL-2831
tree
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commitdiff
2017-11-14
kiramt
JAL-2811 Changed to overlay on via graphics context...
tree
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commitdiff
2017-11-14
kiramt
JAL-2811 Missed commit
tree
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commitdiff
2017-11-14
kiramt
JAL-2811 Made it work for hidden columns/seqs too
tree
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commitdiff
2017-11-14
kiramt
JAL-2831 Attempt at cursor fix for wrapped mode
tree
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commitdiff
2017-11-14
kiramt
Merge branch 'bug/JAL-2811' into bug/JAL-2831
tree
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commitdiff
2017-11-14
kiramt
JAL-2831 deal with hidden cols and seqs in new cursor...
tree
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commitdiff
2017-11-14
kiramt
JAL-2831 Added move viewport event and set up cursor...
tree
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commitdiff
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