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JAL-3010 options to hide / apply changes to ontology sub-types
[jalview.git]
/
src
/
jalview
/
2018-06-01
gmungoc
JAL-3010 options to hide / apply changes to ontology...
tree
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commitdiff
2018-06-01
gmungoc
JAL-3010 refactoring to support feature type grouping...
tree
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commitdiff
2018-06-01
gmungoc
JAL-3010 JAL-1191 default is full Sequence Ontology...
tree
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commitdiff
2018-05-31
gmungoc
JAL-2808 don't capture or report min-max for mixed...
tree
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commitdiff
2018-05-31
gmungoc
JAL-2808 pre-fill numeric inequality filter with min...
tree
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commitdiff
2018-05-28
gmungoc
Merge branch 'bug/JAL-797' into develop
tree
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commitdiff
2018-05-28
gmungoc
Merge remote-tracking branch 'origin/releases/Release_2...
tree
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commitdiff
2018-05-25
Jim Procter
Merge branch 'bug/JAL-2992panelHeight' into releases...
tree
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commitdiff
2018-05-25
Jim Procter
Merge branch 'bug/JAL-1460_dragndropWindows' into relea...
tree
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commitdiff
2018-05-25
gmungoc
JAL-2992 simpler heuristic for available height
bug/JAL-2992panelHeight
tree
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commitdiff
2018-05-25
Jim Procter
Merge branch 'bug/JAL-2991_exporttosvgwrapview' into...
tree
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commitdiff
2018-05-25
Jim Procter
JAL-1460 temp variable for clearer conditional and...
bug/JAL-1460_dragndropWindows
tree
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commitdiff
2018-05-25
Jim Procter
JAL-1460 javadoc
tree
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commitdiff
2018-05-25
gmungoc
JAL-2995 tooltip on fields with double-click to browse...
tree
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commitdiff
2018-05-24
gmungoc
JAL-2997 additional tests
tree
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commitdiff
2018-05-24
Jim Procter
JAL-1460 tidied up the use of windows link file parser
tree
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commitdiff
2018-05-24
Jim Procter
JAL-1460 more complete drag'n'drop debugging info and...
tree
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commitdiff
2018-05-24
Jim Procter
JAL-1460 process .lnk files dragged to Jalview when...
tree
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commitdiff
2018-05-24
Jim Procter
JAL-1460 new data flavor for URLs added belt-and-braces...
tree
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commitdiff
2018-05-23
gmungoc
JAL-2993 AlignFrame listen for keystrokes in OverviewPanel
tree
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commitdiff
2018-05-23
Jim Procter
fix for JAL-2991 - we could do better :/
bug/JAL-2991_exporttosvgwrapview
tree
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commitdiff
2018-05-23
gmungoc
JAL-2997 handle tab-delimited trailing column number...
tree
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commitdiff
2018-05-21
gmungoc
JAL-797 Cmd-W act WHEN_IN_FOCUSED_WINDOW
bug/JAL-797
tree
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commitdiff
2018-05-11
gmungoc
JAL-2986 corrected findIndex for out of range residue...
tree
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commitdiff
2018-05-10
Jim Procter
Merge branch 'bug/JAL-2920_uniprotvariantfeature' into...
tree
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commitdiff
2018-05-10
Jim Procter
JAL-2920 simplified logic and added corner cases for...
tree
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commitdiff
2018-05-09
gmungoc
JAL-2984 add pdb as sequence(s) if associate structure...
tree
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commitdiff
2018-05-09
Jim Procter
Merge branch 'patch/JAL-2976_vaqua4_fallback' into...
tree
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commitdiff
2018-05-09
Jim Procter
JAL-2976 fixed bad equivalence check and implemented...
tree
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commitdiff
2018-05-07
Jim Procter
JAL-2321 ensure default is ‘parseImmediately=true’
tree
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commitdiff
2018-05-07
Jim Procter
JAL-2321 use configured values for structure derived...
tree
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commitdiff
2018-05-07
Jim Procter
JAL-2321 add secondary structure & temp factor if not...
tree
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commitdiff
2018-05-07
Jim Procter
JAL-2321 use StructureImportSettings singleton settings...
tree
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commitdiff
2018-05-07
Jim Procter
JAL-2321 isParseImmediately() allows the parse() method...
tree
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commitdiff
2018-05-07
Jim Procter
JAL-2321 allow JmolParser to be configured before parsi...
tree
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commitdiff
2018-05-07
gmungoc
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-05-07
Jim Procter
JAL-2906 apply GPLv3 license source
tree
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commitdiff
2018-05-07
Jim Procter
JAL-2960 don’t override a swing method and create infin...
tree
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commitdiff
2018-05-04
Jim Procter
Merge branch 'bug/JAL-2899' into releases/Release_2_10_...
tree
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commitdiff
2018-05-04
Jim Procter
JAL-2976 patch NPE when trying to open Uniprot FTS
tree
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commitdiff
2018-05-04
Jim Procter
JAL-2948 transfer features/annotation is now available...
tree
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commitdiff
2018-05-04
Jim Procter
JAL-2960 raise the structure view after adding structur...
tree
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commitdiff
2018-05-02
Jim Procter
JAL-2976 fallback to Vaqua for Macs that don’t work...
tree
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commitdiff
2018-05-01
Jim Procter
JAL-2899 colouring moved from SwingWorker to a backgrou...
tree
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commitdiff
2018-04-30
Jim Procter
Merge branch 'bug/JAL-2899' into releases/Release_2_10_...
tree
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commitdiff
2018-04-25
Jim Procter
Merge branch 'features/JAL-2944_openStructuresInSelecte...
tree
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commitdiff
2018-04-24
gmungoc
JAL-2959 no Print dialog shown if Page Format is Cancelled
tree
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commitdiff
2018-04-23
gmungoc
JAL-2954 more efficient SearchResults.markColumns
tree
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commitdiff
2018-04-18
gmungoc
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-04-18
gmungoc
JAL-2593 render 'duplicate' features if transparency...
tree
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commitdiff
2018-04-13
gmungoc
Merge branch 'features/JAL-2944_openStructuresInSelecte...
features/JAL-2944_openStructuresInSelectedView
tree
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commitdiff
2018-04-12
gmungoc
JAL-2223 don't add duplicate mappings to StructureSelec...
tree
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commitdiff
2018-04-12
gmungoc
JAL-1847 minor post-review updates
tree
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commitdiff
2018-04-12
gmungoc
JAL-2944 tidies for review comments
tree
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commitdiff
2018-04-11
Jim Procter
JAL-2946 catch unexpected SIFTS mapping exceptions...
tree
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commitdiff
2018-04-09
Jim Procter
JAL-2944 ’new view’ and ‘add to view’ button rather...
tree
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commitdiff
2018-04-09
Jim Procter
JAL-1847 superpose checkbox in structure chooser
tree
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commitdiff
2018-04-09
Jim Procter
JAL-1847 JAL-2944 make superposition step a configurabl...
tree
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commitdiff
2018-04-05
Jim Procter
JAL-2945 resolve model as PDB file. Need to verify...
tree
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commitdiff
2018-04-05
Jim Procter
JAL-2945 provide access to last highlighted results
tree
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commitdiff
2018-04-05
Jim Procter
JAL-2944 open selected structures in existing or a...
tree
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commitdiff
2018-04-05
Jim Procter
JAL-2944 combo box to pick which viewer to load structu...
tree
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commitdiff
2018-04-05
Jim Procter
JAL-2944 methods to check existence and get a title...
tree
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commitdiff
2018-04-05
Jim Procter
JAL-2944 allow StructureViewer proxy to be created...
tree
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commitdiff
2018-04-05
Jim Procter
JAL-2944 get viewer’s title via toString()
tree
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commitdiff
2018-04-05
Jim Procter
JAL-2944 expose UI update methods in api
tree
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commitdiff
2018-04-05
Jim Procter
JAL-2944 remove modal prompt logic and expose methods...
tree
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commitdiff
2018-04-05
Jim Procter
JAL-2944 pull up structure viewer discovery routine...
tree
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commitdiff
2018-03-22
gmungoc
JAL-2929 unit test, tidy unused/unneeded fields/parameters
tree
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commitdiff
2018-03-21
Jim Procter
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-03-21
Jim Procter
Merge branch 'patch/JAL-2754_patch2104forJava8' into...
tree
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commitdiff
2018-03-21
Jim Procter
JAL-2754 fix eclipse compilation error about referencin...
tree
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commitdiff
2018-03-21
gmungoc
JAL-2929 use configure Overview gap colour instead...
tree
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commitdiff
2018-03-16
gmungoc
JAL-2679 getGeneId() now uses the same pattern as getGe...
tree
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commitdiff
2018-03-16
gmungoc
Merge remote-tracking branch 'origin/releases/Release_2...
tree
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commitdiff
2018-03-16
gmungoc
JAL-2922 update FeatureRenderer and repaint feature...
tree
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commitdiff
2018-03-16
gmungoc
Merge branch 'bug/JAL-2865removeGC' into develop
tree
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commitdiff
2018-03-15
gmungoc
JAL-2893 enabling Get Crossreferences to ENSEMBLGENOMES
tree
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commitdiff
2018-03-14
gmungoc
JAL-2893 include ENSEMBLGENOMES as a 'roundtrip db...
tree
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commitdiff
2018-03-14
gmungoc
JAL-2679 reinstating changes lost in VCF merge
tree
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commitdiff
2018-03-14
gmungoc
JAL-2679 reinstating changes lost in VCF merge
tree
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commitdiff
2018-03-13
gmungoc
JAL-2913 use FIGURE_FIXEDIDWIDTH (not FIGURE_USERIDWIDTH)
tree
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commitdiff
2018-03-08
gmungoc
Merge remote-tracking branch 'origin/releases/Release_2...
merges/JAL-2906_update2_11_from_2_10_4
tree
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commitdiff
2018-03-08
gmungoc
JAL-2885 tests updated for code changes
tree
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commitdiff
2018-03-08
gmungoc
JAL-2930 use MouseWheelEvent.getPreciseWheelRotation...
tree
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commitdiff
2018-03-07
Jim Procter
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-03-07
gmungoc
Merge branch 'bugs/JAL-2922' into releases/Release_2_10...
tree
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commitdiff
2018-03-07
gmungoc
JAL-2922 [2] not [1] for Boolean column of table
bugs/JAL-2922
tree
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commitdiff
2018-03-07
gmungoc
Merge branch 'bugs/JAL-2922' into releases/Release_2_10...
tree
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commitdiff
2018-03-07
gmungoc
JAL-2922 i18n and bespoke handler for Invert Selection
tree
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commitdiff
2018-03-07
gmungoc
Merge branch 'bug/JAL-2924nullTooltip' into releases...
tree
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commitdiff
2018-03-07
gmungoc
JAL-2926 fix copy group consensus (and paste sequence...
tree
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commitdiff
2018-03-07
gmungoc
JAL-2925 handle empty annotation when copying group...
tree
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commitdiff
2018-03-07
gmungoc
JAL-2913 use FIGURE_USERIDWIDTH for fixed id width...
tree
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commitdiff
2018-02-28
gmungoc
JAL-2924 no tooltip over null annotation positions
bug/JAL-2924nullTooltip
tree
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commitdiff
2018-02-27
Jim Procter
Merge branch 'feature/JAL-2759' into merge/JAL-2759_2104
tree
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commitdiff
2018-02-27
Jim Procter
fix for JAL-2922 - update states all at once and then...
tree
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commitdiff
2018-02-26
Jim Procter
JAL-2920 parse variation and original elements of the...
tree
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commitdiff
2018-02-23
Jim Procter
Merge branch 'features/JAL-2885UniprotHttps' into relea...
tree
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commitdiff
2018-02-23
Jim Procter
JAL-2885 xfam https
features/JAL-2885UniprotHttps
tree
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commitdiff
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