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JAL-2994 put ‘\’ first in character class clause of regex - otherwise doesn’t compile...
[jalview.git]
/
src
/
jalview
/
2018-08-02
Jim Procter
JAL-3070 set host URL correctly from parsed description...
tree
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commitdiff
2018-08-01
Jim Procter
JAL-3070 refactored Client specific code from jalview...
tree
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commitdiff
2018-07-27
Jim Procter
JAL-3070 pull up sequence anonymisation hash, presets...
tree
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commitdiff
2018-07-26
Jim Procter
JAL-3070 pull up logic for offering a parameters dialog...
tree
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commitdiff
2018-07-26
Jim Procter
JAL-3070 abstract class for services with adjustable...
tree
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commitdiff
2018-07-26
Jim Procter
JAL-3070 use ArgumentI in all public constructors,...
tree
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commitdiff
2018-07-26
Jim Procter
JAL-3070 pull up setWebService and alignFrame reference
tree
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commitdiff
2018-07-26
Jim Procter
JAL-3070 UIinfo provides JobParameterStoreI
tree
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commitdiff
2018-07-23
Jim Procter
JAL-3070 pushed down JABAWS specific args for WsJobPara...
tree
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commitdiff
2018-07-23
Jim Procter
JAL-3070 refactored JABAWS specific jalview.gui.WsJobPa...
tree
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commitdiff
2018-07-23
Jim Procter
final merge for merge/wsinterfaces_mchmmer_JAL-3070_JA...
tree
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commitdiff
2018-07-23
Jim Procter
Merge branch 'features/mchmmer' into merge/wsinterfaces...
tree
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commitdiff
2018-07-20
Jim Procter
JAL-3070 pull up hostURL and postURL to UIinfo and...
tree
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commitdiff
2018-07-20
Jim Procter
JAL-3070 core service descriptors for JABAWS services...
tree
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commitdiff
2018-07-20
Jim Procter
JAL-3070 refactored base analysis action descriptor...
tree
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commitdiff
2018-06-26
Jim Procter
JAL-3042 don't allow user to change default history...
tree
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commitdiff
2018-06-26
Jim Procter
JAL-3035 - jalview-das is no more !
tree
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commitdiff
2018-06-07
gmungoc
JAL-2755 correct Javadoc and error handling
tree
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commitdiff
2018-06-06
gmungoc
JAL-3013 resolve symlink to hmmer binaries folder
features/mchmmer
tree
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commitdiff
2018-06-06
gmungoc
JAL-2956 don't load (non-existent) HMMER jar entry...
tree
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commitdiff
2018-06-05
gmungoc
JAL-3011 include annotation scores in sequence id toolt...
tree
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commitdiff
2018-06-05
gmungoc
Merge branch 'develop' into features/mchmmer
tree
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commitdiff
2018-06-04
gmungoc
JAL-3019 correctly form toRange of 'traversed' MapList
tree
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commitdiff
2018-06-04
gmungoc
JAL-3018 updated REST versions to 6.3
tree
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commitdiff
2018-05-31
gmungoc
JAL-2808 don't capture or report min-max for mixed...
tree
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commitdiff
2018-05-31
gmungoc
JAL-2808 pre-fill numeric inequality filter with min...
tree
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commitdiff
2018-05-30
gmungoc
JAL-2629 suppress 'Add Database' menu option in favour...
tree
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commitdiff
2018-05-30
gmungoc
JAL-3005 JAL-2629 file chooser argument for HMM search...
tree
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commitdiff
2018-05-30
gmungoc
JAL-3005 JAL-3008 render file chooser and radio button...
tree
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commitdiff
2018-05-30
gmungoc
JAL-3008 new parameter type RadioChoiceParameter
tree
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commitdiff
2018-05-30
gmungoc
JAL-3005 new argument type FileParameter for file chooser
tree
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commitdiff
2018-05-29
gmungoc
JAL-3005 refactor updateRecentlyOpened to enable reuse
tree
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commitdiff
2018-05-29
Mungo Carstairs
JAL-2994 utility method to match a list of folder/file...
tree
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commitdiff
2018-05-28
gmungoc
JAL-2994 use pattern matches to search for chimera.exe
tree
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commitdiff
2018-05-28
gmungoc
Merge branch 'develop' into features/mchmmer
tree
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commitdiff
2018-05-28
gmungoc
Merge branch 'bug/JAL-797' into develop
tree
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commitdiff
2018-05-28
gmungoc
Merge remote-tracking branch 'origin/releases/Release_2...
tree
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commitdiff
2018-05-25
Jim Procter
Merge branch 'bug/JAL-2992panelHeight' into releases...
tree
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commitdiff
2018-05-25
Jim Procter
Merge branch 'bug/JAL-1460_dragndropWindows' into relea...
tree
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commitdiff
2018-05-25
gmungoc
JAL-2992 simpler heuristic for available height
bug/JAL-2992panelHeight
tree
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commitdiff
2018-05-25
Jim Procter
Merge branch 'bug/JAL-2991_exporttosvgwrapview' into...
tree
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commitdiff
2018-05-25
Jim Procter
JAL-1460 temp variable for clearer conditional and...
bug/JAL-1460_dragndropWindows
tree
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commitdiff
2018-05-25
Jim Procter
JAL-1460 javadoc
tree
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commitdiff
2018-05-25
gmungoc
JAL-2995 tooltip on fields with double-click to browse...
tree
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commitdiff
2018-05-24
gmungoc
JAL-2997 additional tests
tree
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commitdiff
2018-05-24
Jim Procter
JAL-1460 tidied up the use of windows link file parser
tree
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commitdiff
2018-05-24
Jim Procter
JAL-1460 more complete drag'n'drop debugging info and...
tree
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commitdiff
2018-05-24
Jim Procter
JAL-1460 process .lnk files dragged to Jalview when...
tree
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commitdiff
2018-05-24
Jim Procter
JAL-1460 new data flavor for URLs added belt-and-braces...
tree
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commitdiff
2018-05-23
gmungoc
JAL-2993 AlignFrame listen for keystrokes in OverviewPanel
tree
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commitdiff
2018-05-23
Jim Procter
fix for JAL-2991 - we could do better :/
bug/JAL-2991_exporttosvgwrapview
tree
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commitdiff
2018-05-23
gmungoc
JAL-2997 handle tab-delimited trailing column number...
tree
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commitdiff
2018-05-22
gmungoc
JAL-2716 fix to reset choice parameter on Revert
tree
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commitdiff
2018-05-22
gmungoc
JAL-2716 fix broken checkIfModified behaviour
tree
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commitdiff
2018-05-22
gmungoc
JAL-2629 method refactor and menu tidying
tree
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commitdiff
2018-05-21
gmungoc
JAL-797 Cmd-W act WHEN_IN_FOCUSED_WINDOW
bug/JAL-797
tree
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commitdiff
2018-05-15
gmungoc
JAL-2719 parse bit score annotation from search results
tree
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commitdiff
2018-05-15
gmungoc
JAL-1264 exclude score-only from 'Add Reference Annotat...
tree
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commitdiff
2018-05-15
gmungoc
JAL-2629 JAL-2937 respect 'align automatically' option...
tree
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commitdiff
2018-05-14
gmungoc
JAL-2989 refactoring to reduce code duplication
tree
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commitdiff
2018-05-14
gmungoc
JAL-2711 show short file names in search database combo box
tree
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commitdiff
2018-05-14
gmungoc
JAL-2989 support value display names for Option or...
tree
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commitdiff
2018-05-14
gmungoc
JAL-2711 removed unused and flaky utility method
tree
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commitdiff
2018-05-14
gmungoc
JAL-2939 check for hmm present when processing groups
tree
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commitdiff
2018-05-11
gmungoc
JAL-2985 show label instead of checkbox for a required...
tree
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commitdiff
2018-05-11
gmungoc
Merge branch 'develop' into features/mchmmer
tree
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commitdiff
2018-05-11
gmungoc
JAL-2986 corrected findIndex for out of range residue...
tree
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commitdiff
2018-05-10
gmungoc
JAL-2629 revert to showing Profile parameter even if...
tree
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commitdiff
2018-05-10
gmungoc
JAL-2629 default HMMBuild to alignment if not specified...
tree
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commitdiff
2018-05-10
gmungoc
JAL-591 reduced updating by checking/setting 'updating...
tree
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commitdiff
2018-05-10
gmungoc
JAL-2629 handle decline 'Add Database'
tree
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commitdiff
2018-05-10
gmungoc
JAL-2629 adjust placement and optionality of arguments...
tree
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commitdiff
2018-05-10
gmungoc
JAL-591 show choice list with a single option
tree
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commitdiff
2018-05-10
Jim Procter
Merge branch 'bug/JAL-2920_uniprotvariantfeature' into...
tree
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commitdiff
2018-05-10
Jim Procter
JAL-2920 simplified logic and added corner cases for...
tree
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commitdiff
2018-05-09
gmungoc
JAL-2714 HMMSearch cutoff by E-Value, Score or None
tree
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commitdiff
2018-05-09
gmungoc
JAL-2984 add pdb as sequence(s) if associate structure...
tree
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commitdiff
2018-05-09
Jim Procter
Merge branch 'patch/JAL-2976_vaqua4_fallback' into...
tree
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commitdiff
2018-05-09
Jim Procter
JAL-2976 fixed bad equivalence check and implemented...
tree
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commitdiff
2018-05-08
gmungoc
Merge branch 'develop' into features/mchmmer
tree
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commitdiff
2018-05-07
Jim Procter
JAL-2321 ensure default is ‘parseImmediately=true’
tree
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commitdiff
2018-05-07
Jim Procter
JAL-2321 use configured values for structure derived...
tree
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commitdiff
2018-05-07
Jim Procter
JAL-2321 add secondary structure & temp factor if not...
tree
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commitdiff
2018-05-07
Jim Procter
JAL-2321 use StructureImportSettings singleton settings...
tree
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commitdiff
2018-05-07
Jim Procter
JAL-2321 isParseImmediately() allows the parse() method...
tree
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commitdiff
2018-05-07
Jim Procter
JAL-2321 allow JmolParser to be configured before parsi...
tree
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commitdiff
2018-05-07
gmungoc
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-05-07
Jim Procter
JAL-2906 apply GPLv3 license source
tree
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commitdiff
2018-05-07
Jim Procter
JAL-2960 don’t override a swing method and create infin...
tree
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commitdiff
2018-05-04
Jim Procter
Merge branch 'bug/JAL-2899' into releases/Release_2_10_...
tree
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commitdiff
2018-05-04
Jim Procter
JAL-2976 patch NPE when trying to open Uniprot FTS
tree
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commitdiff
2018-05-04
Jim Procter
JAL-2948 transfer features/annotation is now available...
tree
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commitdiff
2018-05-04
Jim Procter
JAL-2960 raise the structure view after adding structur...
tree
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commitdiff
2018-05-02
Jim Procter
JAL-2976 fallback to Vaqua for Macs that don’t work...
tree
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commitdiff
2018-05-01
Jim Procter
JAL-2899 colouring moved from SwingWorker to a backgrou...
tree
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commitdiff
2018-04-30
Jim Procter
Merge branch 'bug/JAL-2899' into releases/Release_2_10_...
tree
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commitdiff
2018-04-25
Jim Procter
Merge branch 'features/JAL-2944_openStructuresInSelecte...
tree
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commitdiff
2018-04-24
gmungoc
JAL-2959 no Print dialog shown if Page Format is Cancelled
tree
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commitdiff
2018-04-24
gmungoc
JAL-2939 exit calc thread if no HMM in alignment
tree
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commitdiff
2018-04-24
gmungoc
JAL-591 use constant for Preferences key
tree
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commitdiff
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