JAL-3676 Documentation in Help for Java Console, Logging and Reporting Bugs
[jalview.git] / src / jalview /
2020-04-06 Jim ProcterMerge branch 'develop' into releases/Release_2_11_1_Branch
2020-04-06 Jim ProcterJAL-3407 redact java 8 incompatible type inference
2020-04-06 Jim ProcterMerge branch 'develop' into releases/Release_2_11_1_Branch
2020-04-06 gmungocJAL-3581 no hidden sequence marker if hidden markers...
2020-04-06 gmungocJAL-3579 no Feature Editor if features not shown
2020-03-31 Jim ProcterMerge branch 'documentation/Release_2_11_1_Branch'...
2020-03-30 Jim ProcterJAL-3407 JAL-3130 back out java 9+ syntax that breaks...
2020-03-20 Jim ProcterJAL-3549 javadoc
2020-03-19 gmungocJAL-3305 don't propagate an empty SelectionGroup to...
2020-03-16 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie...
2020-03-09 gmungocJAL-3528 unit tests added for failed lookup, Javadoc
2020-03-09 gmungocJAL-3549 JAL-3305 no Sort By Score / Density if no...
2020-03-09 gmungocJAL-3412 update layout whenever desired id width changes testbuild/JAL-3412_getIdWidth_test
2020-03-06 gmungocJAL-3187 unit test for findComplementFeaturesAtResidue
2020-03-06 gmungocMerge branch 'feature/JAL-3468featureDescriptionEllipsi...
2020-03-06 gmungocJAL-3468 i18n and additional unit tests feature/JAL-3468featureDescriptionEllipsis
2020-03-05 gmungocMerge branch 'releases/Release_2_11_1_Branch' of https...
2020-03-05 gmungocJAL-3303 suppressed for 2.11.1
2020-03-05 Jim ProcterMerge branch 'improvement/JAL-3543_dont_report_null_ver...
2020-03-04 Ben SoaresJAL-3468 small tidy
2020-03-04 Ben SoaresJAL-3468 improvement to feature description truncation...
2020-03-04 Ben SoaresJAL-3468 Obsessively fixed self-closing <br/> tags
2020-03-03 soaresJAL-3468 Adapted methods to report how many features...
2020-03-02 Jim ProcterJAL-3407 redact Java 8 incompatible '<>' with anonymous...
2020-02-27 Ben SoaresJAL-3543 remove debugging output improvement/JAL-3543_dont_report_null_versions_in_java_console
2020-02-27 Ben SoaresMerge branch 'develop' into improvement/JAL-3543_dont_r...
2020-02-27 Ben SoaresJAL-3543 Conditional reporting of Install4j and Getdown...
2020-02-27 Jim ProcterMerge branch 'bug/JAL-3412idWidthDiscrepancy' into... bug/JAL-3412idWidthDiscrepancy
2020-02-27 Jim ProcterMerge branch 'bug/JAL-3296changeStartInvalidateCursor...
2020-02-26 Jim ProcterMerge branch 'bug/JAL-3477_memory_max_allocation' into...
2020-02-26 Jim ProcterMerge branch 'improvement/JAL-3449_add_install4j_instal...
2020-02-21 Jim ProcterMerge branch 'bug/JAL-3536getCrossrefTwice' into develop
2020-02-21 Jim ProcterJAL-3186 ensure transparency slider position is updated...
2020-02-21 Jim ProcterJAL-3186 avoid repainting twice in splitframe
2020-02-21 Jim ProcterMerge branch 'develop' into features/JAL-3187_uitweaks
2020-02-20 Jim ProcterJAL-3187 nice to have enabling/disabling of apply/cance... features/JAL-3187_uitweaks
2020-02-20 Jim ProcterJAL-3187 use the recommended way of catching tab select...
2020-02-20 gmungocJAL-3187 repaint complement after loading on features
2020-02-20 Jim ProcterJAL-3187 individual feature settings panel has revert...
2020-02-19 Jim ProcterJAL-3187 i18n for titles in windows/tabs
2020-02-19 Jim ProcterJAL-3535 todo re titles for CDS and Protein views in...
2020-02-19 Jim ProcterJAL-3187 - tabbed pane is nulled when feature settings...
2020-02-19 Ben SoaresMerge branch 'develop' into improvement/JAL-3449_add_in... improvement/JAL-3449_add_install4j_installer_getdown_versions_to_jalview_console.2
2020-02-19 Jim ProcterJAL-3187 JAL-2764 close feature settings when parent...
2020-02-19 Jim ProcterJAL-3538 anti-aliasing enabled by default
2020-02-18 Ben SoaresJAL-3449 merge from develop
2020-02-18 Jim ProcterJAL-3529 attempt to guess database for a sequence’s...
2020-02-18 Jim ProcterJAl-3187 JAL-3535 JAL-3534 update open feature settings...
2020-02-18 Mungo CarstairsJAL-3536 JAL-3187 don't create duplicate CDS-to-protein... bug/JAL-3536getCrossrefTwice
2020-02-17 Jim ProcterJAL-3534 patch for simple case (Protein or Nucleotide...
2020-02-17 Jim ProcterJAL-3187 fix for JAL-3533 on CDS/Protein tabbed feature...
2020-02-17 Jim ProcterJAL-3187 JAL-3533 JAL-3535 set feature settings dialog...
2020-02-17 Jim ProcterJAL-3187 better semantics for feature settings closed...
2020-02-14 Jim ProcterJAL-3532 TODO comment
2020-02-14 Jim Procterfix for JAL-3529
2020-02-14 Jim ProcterJAL-3529 preferentially output source dbrefs or princip...
2020-02-14 Jim ProcterJAL-3187 alternative solution - gather feature settings...
2020-02-14 Jim ProcterJAL-1354 JAL-3528 fix bug from b594d516dac69eebcccdc743...
2020-02-12 Jim ProcterJAL-3187 applet alignFrame needs new api method
2020-02-12 Jim ProcterJAL-3187 first stab at ‘show CDS/Protein Settings’...
2020-02-12 Jim ProcterJAL-3187 view controller UI api method to show feature...
2020-02-12 Jim ProcterJAL-3187 convenience method on SplitContainerI to retri...
2020-02-12 Jim ProcterJAL-1354 JAL-3528 report missing keys for MessageManage...
2020-02-06 gmungocJAL-1842 adjust code to match changed semantics of...
2020-02-06 gmungocJAL-3509 JAL-1842 minor tidying of code
2020-02-06 gmungocJAL-1842 remove redundant call to FeatureRenderer.featu...
2020-02-06 gmungocJAL-3509 better placement of call to notifyFeaturesChan...
2020-02-06 gmungocJAL-3509 coerce RESNUM to hidden (really) after fetchin...
2020-01-28 gmungocMerge branch 'feature/JAL-3121gffAttributeMap' into...
2020-01-28 gmungocJAL-3187 one more obsolete method removed
2020-01-24 gmungocJAL=3121 more data format validation/tests, help text... feature/JAL-3121gffAttributeMap
2020-01-23 gmungocJAL-3121 'attributes map' in GFF3 without special ...
2020-01-16 Jim ProcterMerge branch 'improvement/JAL-3449_add_install4j_instal...
2020-01-16 Jim ProcterMerge branch 'improvement/JAL-3474_lots_of_.cvsignore_f...
2020-01-10 Ben SoaresJAL-3477 Javadoc, addition of -jvmmempc and -jvmmemmax...
2020-01-09 Ben SoaresJAL-3477 Refactoring based on CR-JAL-189
2020-01-09 Ben SoaresJAL-3477 Javadoc, refactoring and slight changes to...
2019-12-20 Ben SoaresJAL-3473 Checked value of def and min. Set def to min...
2019-12-12 gmungocJAL-3490 unit test for ignore hidden regions with selec...
2019-12-11 gmungocJAL-3490 tests for skip hidden regions (and a bug fix)
2019-12-11 gmungocJAL-3490 extract constants for number of rows in layout
2019-12-11 gmungocJAL-3490 revised layout and search algorithm (more...
2019-12-09 gmungocJAL-3490 pull up getViewAsVisibleContigs to base class...
2019-12-06 Ben SoaresJAL-3449 Added more versions to getdown splashscreen...
2019-11-29 gmungocJAL-3490 Finder match across entirely gapped hidden...
2019-11-22 Ben SoaresJAL-3449 install4j version, install4j template version...
2019-11-20 Ben SoaresJAL-3477 A bit of refactoring for the better
2019-11-19 Ben SoaresJAL-3210 removing overly complicated logging. Settling...
2019-11-18 Ben SoaresJAL-3477 New jvmmemmax config option in getdown and...
2019-11-18 Ben SoaresJAL-3477 New sensible default decisions on memory,...
2019-11-01 Ben SoaresJAL-3474 removed all .cvsignore files stored in the... improvement/JAL-3474_lots_of_.cvsignore_files
2019-10-31 gmungocJAL-3468 truncate feature description to 40 chars in...
2019-09-26 gmungocJAL-2481 remove code duplication left by merge
2019-09-26 gmungocJAL-3441 action double-click in Feature Type column...
2019-08-23 gmungocJAL-3141 correct cast of spinner value
2019-08-22 gmungocJAL-3121 slightly cleaner parsing of, and unit test...
2019-08-22 gmungocMerge branch 'develop' into feature/JAL-3121gffAttributeMap
2019-08-22 gmungocJAL-3187 case-insensitive codon variant calculation
2019-08-22 gmungocJAL-3121 round trip GFF attributes including map-valued...
2019-08-22 gmungocJAL-3187 one more obsolete method removed
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