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JAL-1854 removed pointless method override
[jalview.git]
/
src
/
jalview
/
2016-08-24
gmungoc
JAL-1854 removed pointless method override
tree
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commitdiff
2016-08-24
gmungoc
JAL-1424 removed two redundant (overwritten) setText...
tree
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commitdiff
2016-08-24
gmungoc
JAL-1424 corrected Message bundle lookup key
tree
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commitdiff
2016-08-24
gmungoc
JAL-1424 undo i18n of exception message
tree
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commitdiff
2016-08-24
gmungoc
JAL-1854 declare immutable class as final
tree
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commitdiff
2016-08-24
gmungoc
JAL-1424 recode calls to MessageManager to allow code...
tree
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commitdiff
2016-08-24
gmungoc
JAL-2151 port fix to applet
tree
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commitdiff
2016-08-23
gmungoc
JAL-2176 unused field / methods removed
tree
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commitdiff
2016-08-23
gmungoc
JAL-2174 markColumns() refactored inside ColumnSelection
tree
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commitdiff
2016-08-22
gmungoc
JAL-1448 corrected for backwards compatibility for...
tree
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commitdiff
2016-08-22
gmungoc
JAL-2175 code tidying
tree
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commitdiff
2016-08-22
gmungoc
JAL-2175 code/test fixes/tidy for PFAM/MSF/JSON roundtrip
tree
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commitdiff
2016-08-22
gmungoc
JAL-2011 adjust method to fix failing unit test
tree
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commitdiff
2016-08-19
gmungoc
JAL-2174 bug fixes + refactoring to allow + unit tests
tree
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commitdiff
2016-08-18
gmungoc
JAL-2077 using Platform method to check for Ctrl-down
tree
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commitdiff
2016-08-18
gmungoc
JAL-1445 status message '...not containing...' for...
tree
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commitdiff
2016-08-18
gmungoc
JAL-1693 show warning dialog if unable to make CDS...
tree
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commitdiff
2016-08-18
gmungoc
JAL-1855 fail gracefully if XML has no <sequence> element
tree
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commitdiff
2016-08-18
gmungoc
JAL-2077 handling Cmd-click in scale panel for Mac...
tree
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commitdiff
2016-08-18
gmungoc
JAL-2001 return copy of selection in getSelected()
tree
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commitdiff
2016-08-17
gmungoc
JAL-2146 status message now with formatted residue...
tree
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commitdiff
2016-08-17
gmungoc
JAL-2173 don't remove annotation from hidden columns
tree
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commitdiff
2016-08-17
gmungoc
JAL-2172 reverted to not sorting column selection
tree
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commitdiff
2016-08-17
gmungoc
JAL-2105 rest versions updated to 4.6, change log link...
tree
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commitdiff
2016-08-17
gmungoc
JAL-2172 handle case where column selection is not...
tree
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commitdiff
2016-08-15
tcofoegbu
JAL-1128 fix for truncated bottom boarder pixels in...
tree
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commitdiff
2016-08-15
tcofoegbu
JAL-1128 fix for truncated bottom boarder pixels in...
tree
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commitdiff
2016-08-15
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-08-15
tcofoegbu
JAL-1919 Added improvement to ensure consistence of...
tree
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commitdiff
2016-08-10
gmungoc
JAL-2124 i18n of 'All' menu item
tree
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commitdiff
2016-08-10
gmungoc
JAL-2124 i18n of "All" menu item
tree
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commitdiff
2016-08-10
gmungoc
JAL-2146 small optimisation (avoid String creation)
tree
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commitdiff
2016-08-10
gmungoc
JAL-2146 show Column no [Sequence no [Residue / pos...
tree
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commitdiff
2016-08-08
gmungoc
JAL-1577 rebuild menus when secondary structure manuall...
tree
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commitdiff
2016-08-08
gmungoc
JAL-2168 document '-nonews' parameter
tree
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commitdiff
2016-08-05
gmungoc
JAL-2168 skip news feed if parameter "-nonews" is supplied
tree
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commitdiff
2016-08-05
gmungoc
JAL-1448 always use UK locale for formatted date properties
tree
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commitdiff
2016-08-04
gmungoc
JAL-2008 handle fast mouse drag of feature ordering...
tree
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commitdiff
2016-08-04
gmungoc
JAL-2015 convert Color from colour picker to FeatureColour
tree
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commitdiff
2016-08-02
Jim Procter
JAL-2046 additional logic to suppress spurious implemen...
tree
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commitdiff
2016-08-02
Jim Procter
JAL-2034 show greyed out image during overview update
tree
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commitdiff
2016-08-02
Jim Procter
Merge branch 'develop' into efficiency/JAL-2034_JAL...
tree
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commitdiff
2016-08-02
Jim Procter
JAL-2068 reinstated false return value for notifyWorking
tree
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commitdiff
2016-08-02
Jim Procter
Merge branch 'develop' into efficiency/JAL-2034_JAL...
tree
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commitdiff
2016-08-01
Jim Procter
Merge branch 'develop' of source.jalview.org/git/jalvie...
tree
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commitdiff
2016-08-01
tcofoegbu
JAL-2164 bugfix to convert insCodes of '\000' to '...
tree
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commitdiff
2016-08-01
Jim Procter
Merge branch 'bug/JAL-2154projectMappings' into develop
tree
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commitdiff
2016-08-01
Jim Procter
JAL-1772 make sure we actually return reference to...
tree
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commitdiff
2016-07-29
Jim Procter
JAL-2164 JAL-1772 explodeViews can be static, so make...
tree
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commitdiff
2016-07-29
Jim Procter
JAL-2154 disable visual delay only after completed...
tree
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commitdiff
2016-07-29
Jim Procter
JAL-2154 register any new dataset codon frames only...
tree
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commitdiff
2016-07-29
Jim Procter
JAL-2154 only include mappings in dbref/alcodon in...
tree
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commitdiff
2016-07-27
Jim Procter
JAL-2154 toString for forward references
tree
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commitdiff
2016-07-27
Jim Procter
JAL-2163 set title for the alignframe from restored...
patch/JAL-2156_JAL-2163_saveSplitFrameFromSaveAs_restoreTitles
tree
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commitdiff
2016-07-27
Jim Procter
JAL-2156 resolve and add complementary views for saveAl...
tree
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commitdiff
2016-07-27
Jim Procter
JAL-2156 refactor saveState & saveAlignment to common...
tree
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commitdiff
2016-07-27
Jim Procter
JAL-2156 getter for AlignFrame(s) held in a splitframe
tree
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commitdiff
2016-07-26
Jim Procter
JAL-2157 todo: verify parser/file format enums and...
tree
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commitdiff
2016-07-26
tcofoegbu
JAL-2157 bugfix for issues from enum refactoring
tree
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commitdiff
2016-07-25
tcofoegbu
JAL-2157 bugfix for regression from commit 82a6c8e2e25b...
tree
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commitdiff
2016-07-24
Jim Procter
JAL-2154 formatting
tree
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commitdiff
2016-07-24
Jim Procter
JAL-2154 keep track of incomplete sequences and report...
tree
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commitdiff
2016-07-24
Jim Procter
JAL-2154 systematic pattern for defining/resolving...
tree
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commitdiff
2016-07-23
Jim Procter
JAL-2154 patch the hack (Jalview2XML tests pass)
tree
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commitdiff
2016-07-22
tcofoegbu
JAL-2148 Bugfix in structureImportSettings string-to...
tree
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commitdiff
2016-07-21
tcofoegbu
Resolve merge conflict for StructureImportSettings
tree
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commitdiff
2016-07-21
tcofoegbu
JAL-2148 fix to heuristically determine chain terminati...
tree
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commitdiff
2016-07-21
Jim Procter
Merge branch 'apifix/JAL-1926_JAL-2106' into develop
tree
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commitdiff
2016-07-20
gmungoc
JAL-2154 poke JSeq start/end into Vamsas sequence
tree
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commitdiff
2016-07-20
Jim Procter
JAL-1926 JAL-2106 fix name for flag controlling additio...
tree
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commitdiff
2016-07-20
Jim Procter
JAL-1926 JAL-2106 don’t use PDB database constant as...
tree
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commitdiff
2016-07-20
Jim Procter
JAL-1926 JAL-2106 use enum for ‘DEFAULT_STRUCTURE_FORMA...
tree
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commitdiff
2016-07-20
Jim Procter
JAL-1926 JAL-2106 remove startRes/endRes fields - not...
tree
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commitdiff
2016-07-20
gmungoc
JAL-2023 stronger check for whether to start cdna consensus
tree
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commitdiff
2016-07-20
gmungoc
JAL-2023 avoid writing / loading empty mappings
tree
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commitdiff
2016-07-20
gmungoc
JAL-2023 JAL-1681 fixed bug in computing '+' for co...
tree
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commitdiff
2016-07-20
gmungoc
JAL-2068 AnnotationWorker create/update annotation...
tree
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commitdiff
2016-07-19
gmungoc
JAL-2068 small refactor to reuse shared method
tree
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commitdiff
2016-07-19
gmungoc
JAL-2068 update rather than recreate AlignmentAnnotatio...
tree
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commitdiff
2016-07-19
gmungoc
JAL-391 corrected handling of gapped sequences
tree
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commitdiff
2016-07-19
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-07-19
tcofoegbu
JAL-1919 set default structure file format to mmCIF...
tree
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commitdiff
2016-07-19
Jim Procter
Merge branch 'develop' into efficiency/JAL-2034_JAL...
tree
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commitdiff
2016-07-18
Jim Procter
Merge branch 'develop' of source.jalview.org/git/jalvie...
tree
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commitdiff
2016-07-18
Jim Procter
JAL-666 patch JAL-1947 in applet where overview is...
tree
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commitdiff
2016-07-18
gmungoc
JAL-2105 check content of Ensembl REST ping response
tree
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commitdiff
2016-07-18
gmungoc
JAL-2099 ensure initial setting of scaleAbove reaches...
tree
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commitdiff
2016-07-18
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-07-18
gmungoc
JAL-2099 JAL-2100 port scale number / hidden column...
tree
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commitdiff
2016-07-18
Jim Procter
JAL-2068 scale annotation display character to width...
tree
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commitdiff
2016-07-18
Jim Procter
JAL-2121 cleanup TODO
tree
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commitdiff
2016-07-18
gmungoc
JAL-2015 restore check for null colour in paint()
tree
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commitdiff
2016-07-18
Jim Procter
Merge branch 'features/JAL-2068groovyAnnotationWorker...
tree
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commitdiff
2016-07-18
Jim Procter
JAL-2145 improvement: ensure conservation calculation...
tree
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commitdiff
2016-07-18
Jim Procter
JAL-2145 documentation of getWidth()
tree
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commitdiff
2016-07-18
Jim Procter
JAL-2145 JAL-1551 formatting
tree
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commitdiff
2016-07-18
Jim Procter
JAL-2145 fix: build alignments before building AlignFra...
tree
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commitdiff
2016-07-14
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-07-14
tcofoegbu
JAL-1919 house-keeping
tree
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commitdiff
2016-07-14
Jim Procter
fix for JAL-2147
tree
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commitdiff
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