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Merge branch 'develop' into releases/Release_2_11_Branch
[jalview.git]
/
src
/
jalview
/
2019-05-06
gmungoc
JAL-3239 release note
tree
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commitdiff
2019-05-06
gmungoc
Merge remote-tracking branch 'origin/bug/JAL-3239monosp...
tree
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commitdiff
2019-05-06
gmungoc
JAL-3244 delete obsolete method
tree
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commitdiff
2019-05-02
gmungoc
JAL-3239 draw EPS or SVG one character at a time (even...
bug/JAL-3239monospacedEps
tree
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commitdiff
2019-05-02
gmungoc
JAL-3244 renamed Platform method for clarity
bug/JAL-3244jmolWindows
tree
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commitdiff
2019-05-01
gmungoc
JAL-3244 ignore file path separator when comparing...
tree
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commitdiff
2019-04-30
gmungoc
JAL-3241 simplified enum constructors for classloadabil...
tree
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commitdiff
2019-04-29
gmungoc
JAL-2738 JAL-2743 update unit test to match new VCF...
tree
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commitdiff
2019-04-26
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2019-04-26
gmungoc
JAL-2743 class Javadoc
tree
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commitdiff
2019-04-26
gmungoc
JAL-2738 JAL-2743 properties to map VCF header to speci...
tree
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commitdiff
2019-04-26
Ben Soares
JAL-3233 Added isAMac check for -Xdock:icon addition...
tree
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commitdiff
2019-04-26
gmungoc
JAL-3010 borderless 'x' for "delete this filter condition"
tree
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commitdiff
2019-04-26
gmungoc
JAL-2808 better tooltip 'delete this condition'
tree
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commitdiff
2019-04-25
Ben Soares
JAL-3224 JAL-3225 Some fixes in install4j template...
tree
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commitdiff
2019-04-25
Ben Soares
JAL-3224 JAL-3225 Added lines to check for updates...
tree
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commitdiff
2019-04-24
Jim Procter
Merge branch 'task/JAL-3225_Integration_Gradle_building...
tree
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commitdiff
2019-04-23
Jim Procter
Merge branch 'develop' into bug/JAL-3224_getdown_change...
tree
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commitdiff
2019-04-20
gmungoc
JAL-2791 tailored message if find fails on selection...
tree
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commitdiff
2019-04-18
gmungoc
JAL-3193 dbSource always "ENSEMBL"
tree
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commitdiff
2019-04-16
gmungoc
Merge branch 'bug/JAL-3218scalePanelPopups' into develop
tree
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commitdiff
2019-04-15
Ben Soares
JAL-3130 Helper classes to take Class Exceptions when...
tree
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commitdiff
2019-04-15
gmungoc
JAL-3193 no separatge EnsemblGenomes source in Sequence...
tree
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commitdiff
2019-04-11
Jim Procter
Merge branch 'develop' into task/JAL-3130_Java_11_inves...
tree
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commitdiff
2019-04-10
gmungoc
JAL-3193 rest.ensemblgenomes.org merged to rest.ensembl.org
tree
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commitdiff
2019-04-10
gmungoc
JAL-3018 REST version updated to 10.0
tree
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commitdiff
2019-04-05
Ben Soares
JAL-3130 This commit concentrates on the Mac OS X DMG...
tree
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commitdiff
2019-04-04
Ben Soares
JAL-3130 trying to be Java 1.8 source compatible -...
tree
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commitdiff
2019-04-03
gmungoc
JAL-3021 show Sequence Details with cursor at top
tree
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commitdiff
2019-04-02
gmungoc
JAL-3218 allow both Hide and Reveal in scale panel...
bug/JAL-3218scalePanelPopups
tree
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commitdiff
2019-04-01
Ben Soares
JAL-3130 JAL-3007 Added gradle build for Java 11 and...
tree
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commitdiff
2019-03-28
gmungoc
Merge branch 'feature/JAL-3181linkOrdering' into develop
tree
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commitdiff
2019-03-27
gmungoc
JAL-2620 improved error reporting on failure to load...
tree
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commitdiff
2019-03-25
gmungoc
JAL-2717 adjusted code so default correctly returned...
tree
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commitdiff
2019-03-23
gmungoc
JAL-1889 explicit recalc of geometry for scale left...
bug/JAL-1889serverTestSuite
tree
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commitdiff
2019-03-23
gmungoc
JAL-1889 remove debug logging, add updateLayout()
tree
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commitdiff
2019-03-22
gmungoc
JAL-1889 more debug logging
tree
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commitdiff
2019-03-21
gmungoc
JAL-1889 better debug logging
tree
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commitdiff
2019-03-21
gmungoc
JAL-1889 temporary debug in findColumn()
tree
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commitdiff
2019-03-21
Ben Soares
JAL-3130 Replaced deprecated Class.newInstance() with...
tree
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commitdiff
2019-03-20
Ben Soares
JAL-3130 Lots of deprecation fixes. See utils/deprecat...
tree
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commitdiff
2019-03-20
gmungoc
JAL-3093 fine tuning of SeqPanel tooltip
tree
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commitdiff
2019-03-20
gmungoc
JAL-3212 unit test and fix for Scale Panel bug
tree
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commitdiff
2019-03-19
Ben Soares
JAL-3130 remove some comments on quit. fix modules...
tree
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commitdiff
2019-03-19
Ben Soares
JAL-3130 Merge of JAL-3130_Java_11_investigations-Ben...
tree
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commitdiff
2019-03-15
gmungoc
JAL-2964 missed branch for restore link tree to all...
tree
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commitdiff
2019-03-15
gmungoc
JAL-3203 Overview show hidden default false also in...
tree
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commitdiff
2019-03-12
gmungoc
Merge branch 'feature/JAL-3127_seqidChainshading' into...
tree
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commitdiff
2019-03-12
gmungoc
JAL-3127 check for null viewport
feature/JAL-3127_seqidChainshading
tree
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commitdiff
2019-03-11
gmungoc
Merge branch 'develop' into merge/JAL-3127
tree
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commitdiff
2019-03-11
gmungoc
JAL-1270 JAL-2416 JAL-2839 set alwaysRun=true in test...
tree
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commitdiff
2019-03-11
gmungoc
Merge branch 'develop' into merge/JAL-3127
tree
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commitdiff
2019-03-11
gmungoc
Merge branch 'feature/JAL-2250colourAllGroups' into...
tree
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commitdiff
2019-03-11
gmungoc
JAL-3201 restore group colours correctly from project
feature/JAL-2250colourAllGroups
tree
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commitdiff
2019-03-11
gmungoc
Merge branch 'feature/JAL-3127_seqidChainshading' into...
tree
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commitdiff
2019-03-11
gmungoc
JAL-3206 strict above/below threshold test restored
tree
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commitdiff
2019-03-11
gmungoc
Merge branch 'bug/JAL-3075' into develop
tree
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commitdiff
2019-03-08
gmungoc
JAL-3193 defensive trim of URL read from properties...
tree
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commitdiff
2019-03-08
gmungoc
JAL-3075 update column selection on mouse up after...
bug/JAL-3075
tree
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commitdiff
2019-03-07
gmungoc
Merge branch 'feature/JAL-3180colourAnnotationMenu...
tree
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commitdiff
2019-03-07
Ben Soares
JAL-3130 deprecation change preparation
tree
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commitdiff
2019-03-07
gmungoc
JAL-2250 default Apply Colour to All Groups selected
tree
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commitdiff
2019-03-07
Jim Procter
JAL-3127 set ‘updateStructures’ flag for viewports...
tree
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commitdiff
2019-03-07
gmungoc
JAL-2717 corrected i18n of colour scheme names
tree
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commitdiff
2019-03-07
gmungoc
Merge branch 'feature/JAL-3205symmetricCalc' into develop
tree
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commitdiff
2019-03-06
gmungoc
Merge branch 'tasks/JAL-3035_remove_dasobert_dependency...
tree
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commitdiff
2019-03-06
gmungoc
JAL-3035 more das bits removed
tree
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commitdiff
2019-03-05
gmungoc
Merge branch 'bug/JAL-3201groupClustal' into develop
tree
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commitdiff
2019-03-05
gmungoc
Merge remote-tracking branch 'origin/features/JAL-2620a...
tree
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commitdiff
2019-03-05
gmungoc
Merge branch 'bug/JAL-2621' into develop
tree
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commitdiff
2019-03-05
gmungoc
Merge remote-tracking branch 'origin/bug/JAL-3141_Messa...
tree
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commitdiff
2019-03-05
gmungoc
Merge remote-tracking branch 'origin/bug/JAL-2839findWi...
tree
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commitdiff
2019-03-05
gmungoc
Merge remote-tracking branch 'origin/bug/JAL-914multipl...
tree
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commitdiff
2019-03-05
gmungoc
Merge remote-tracking branch 'origin/features/JAL-2814f...
tree
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commitdiff
2019-03-05
Ben Soares
JAL-3141 Fixed inconsistent (changed) message labels...
bug/JAL-3141_Messages_discrepancy_fix
tree
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commitdiff
2019-03-05
gmungoc
Merge remote-tracking branch 'origin/bug/JAL-3002fastPa...
tree
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commitdiff
2019-03-05
gmungoc
JAL-3049 JAL-3032 tidy/i18n code, remove redundant...
tree
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commitdiff
2019-03-05
gmungoc
JAL-3049 redo (part of) commit 92bc328
tree
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commitdiff
2019-03-05
gmungoc
JAL-3054 small y-overlap of tooltip and cell leads...
tree
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commitdiff
2019-03-05
gmungoc
Merge remote-tracking branch 'origin/bug/JAL-3049colour...
tree
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commitdiff
2019-03-05
gmungoc
JAL-3205 added a delta parameter to Matrix.equals()
feature/JAL-3205symmetricCalc
tree
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commitdiff
2019-03-04
gmungoc
Merge branch 'bug/JAL-3072scrollThread' into merge...
tree
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commitdiff
2019-03-04
gmungoc
Merge remote-tracking branch 'origin/bug/JAL-3082select...
tree
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commitdiff
2019-03-04
gmungoc
JAL-3206 avoid divide by zero when threshold is graphMi...
tree
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commitdiff
2019-03-04
gmungoc
Merge branch 'bug/JAL-3099alignmentVisibleWidth' into...
tree
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commitdiff
2019-03-04
gmungoc
Merge remote-tracking branch 'origin/tasks/JAL-3035_rem...
tree
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commitdiff
2019-03-04
gmungoc
Merge branch 'bug/JAL-3120restoreFeatureColour' into...
tree
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commitdiff
2019-03-03
gmungoc
JAL-3205 faster calculation with symmetric score matrix
tree
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commitdiff
2019-03-01
gmungoc
Merge branch 'bug/JAL-2791exportFilteredFeature' into...
tree
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commitdiff
2019-03-01
gmungoc
Merge branch 'feature/JAL-3093wrappedModeTooltips'...
tree
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commitdiff
2019-03-01
gmungoc
Merge branch 'feature/JAL-1244stretchStatusMsg' into...
tree
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commitdiff
2019-03-01
gmungoc
Merge branch 'bug/JAL-3139colocatedFeatures' into develop
tree
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commitdiff
2019-03-01
gmungoc
JAL-3154 disable reorder columns before adding to viewport
tree
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commitdiff
2019-03-01
gmungoc
Merge branch 'bug/JAL-3154tableColumnDrag' into develop
tree
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commitdiff
2019-03-01
gmungoc
Merge branch 'bug/JAL-3161annotationTooltipRange' into...
tree
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commitdiff
2019-03-01
gmungoc
Merge branch 'bug/JAL-3158selectionBroadcasts' into...
tree
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commitdiff
2019-03-01
gmungoc
Merge branch 'bug/JAL-3164complementOverview' into...
tree
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commitdiff
2019-03-01
gmungoc
Merge branch 'merge/JAL-3140' into develop
tree
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commitdiff
2019-03-01
gmungoc
JAL-3140 update for change to SequenceI api
tree
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commitdiff
2019-03-01
gmungoc
Merge branch 'feature/intervalStoreJ' into merge/JAL...
tree
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commitdiff
next