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More informative error messages.
[jalview.git]
/
src
/
jalview
/
2005-06-14
amwaterhouse
reset if clustalX colouring
tree
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commitdiff
2005-06-14
amwaterhouse
Dont delete nextSeq
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commitdiff
2005-06-14
amwaterhouse
PaintRefresher must be sent alignment
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commitdiff
2005-06-14
amwaterhouse
super.paintComponent
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commitdiff
2005-06-14
amwaterhouse
Set background colour of applet RGB
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commitdiff
2005-06-14
amwaterhouse
protected now public
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commitdiff
2005-06-14
amwaterhouse
Double click to launch file browser
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commitdiff
2005-06-14
amwaterhouse
tooltips instant (hopefully)
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commitdiff
2005-06-14
amwaterhouse
No spaces allowed in sequence name
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commitdiff
2005-06-14
amwaterhouse
Load/Save trees
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commitdiff
2005-06-14
amwaterhouse
Returns TreePanel when opening Newick
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commitdiff
2005-06-14
amwaterhouse
Saves trees
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commitdiff
2005-06-13
jprocter
null pointer fix.
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commitdiff
2005-06-13
amwaterhouse
uses paintrefresher
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commitdiff
2005-06-13
amwaterhouse
clustal probs
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commitdiff
2005-06-13
amwaterhouse
quit saves screen size
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commitdiff
2005-06-13
amwaterhouse
Updates checkboxes on load
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commitdiff
2005-06-13
amwaterhouse
PaintRefresh changed
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commitdiff
2005-06-13
amwaterhouse
protected now public
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commitdiff
2005-06-13
amwaterhouse
Quit actionPerformed
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commitdiff
2005-06-13
amwaterhouse
Get colourScheme with seqs and width
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commitdiff
2005-06-10
amwaterhouse
SeqFetcher modified
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commitdiff
2005-06-10
amwaterhouse
remove imports
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commitdiff
2005-06-10
amwaterhouse
Fastpaint is false initially
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commitdiff
2005-06-10
jprocter
added logs.Castor.level
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commitdiff
2005-06-10
jprocter
added castor logger configuration.
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commitdiff
2005-06-10
amwaterhouse
Remove imports
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commitdiff
2005-06-10
amwaterhouse
set conservation/consensus in constructor
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commitdiff
2005-06-10
jprocter
removed exception name from server error state (to...
tree
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commitdiff
2005-06-09
amwaterhouse
Monospaced
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commitdiff
2005-06-09
amwaterhouse
Warn if Textarea limit has been reached
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commitdiff
2005-06-08
amwaterhouse
replace space
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commitdiff
2005-06-08
amwaterhouse
group recalc conserve
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commitdiff
2005-06-08
amwaterhouse
recalc group conserve
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commitdiff
2005-06-08
amwaterhouse
if missing forward slash
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commitdiff
2005-06-08
amwaterhouse
Recalc accelerated
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commitdiff
2005-06-08
amwaterhouse
Sets sequence features
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commitdiff
2005-06-08
amwaterhouse
Formatted source
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commitdiff
2005-06-08
amwaterhouse
GPL license added
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commitdiff
2005-06-08
amwaterhouse
Add email to about
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commitdiff
2005-06-07
jprocter
added a couple of debug statements for unix browser...
tree
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commitdiff
2005-06-06
amwaterhouse
closes if accepted
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commitdiff
2005-06-05
jprocter
made error for browser configuration on unix a bit...
tree
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commitdiff
2005-06-05
jprocter
firefox now default for unixen.
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commitdiff
2005-06-05
jprocter
more subtle rearrangements
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commitdiff
2005-06-03
jprocter
Reinstated 'create tree from selected region only'...
tree
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commitdiff
2005-06-02
jprocter
tidied the exceptions and ws server error behaviour
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commitdiff
2005-06-02
amwaterhouse
Warn if URL not found
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commitdiff
2005-06-02
amwaterhouse
Cut and paste changed
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commitdiff
2005-06-02
amwaterhouse
Reverse order for windows, readin from url
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commitdiff
2005-06-02
amwaterhouse
startup file is jalview.org
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commitdiff
2005-06-02
amwaterhouse
Name of xml file changed
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commitdiff
2005-06-02
amwaterhouse
Check startup file is not null
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commitdiff
2005-06-02
jprocter
minor changes to make jalopy happy
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commitdiff
2005-06-02
jprocter
minor changes to try and make jalopy happy
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commitdiff
2005-05-31
jprocter
Moved comment so it doesn't break jalopy (this is not...
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commitdiff
2005-05-30
jprocter
Changed sortByPID to use the gapped PID function.
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commitdiff
2005-05-30
jprocter
comments
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commitdiff
2005-05-30
jprocter
Added clustalW 'realignment' (primitive)
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commitdiff
2005-05-30
jprocter
added default ClustalWS or MuscleWS to remove gaps.
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commitdiff
2005-05-30
jprocter
propagated use of jalview.util.GapChars for gap removal.
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commitdiff
2005-05-30
jprocter
more robust parsing for DBset/DBname|id1|id2 type ids
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commitdiff
2005-05-30
jprocter
modified history for redundancy removal.
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commitdiff
2005-05-30
jprocter
fixed stacktrace potential for pairwise alignment action.
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commitdiff
2005-05-30
jprocter
Modified output on stdout for similarity matrix.
tree
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commitdiff
2005-05-27
jprocter
fixed brain interruption bug.
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commitdiff
2005-05-27
amwaterhouse
ignores blank lines read in and write out
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commitdiff
2005-05-27
jprocter
right ordering for RedundancyPanel constructor
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commitdiff
2005-05-27
jprocter
added proper state check for failedJob flag.
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commitdiff
2005-05-27
jprocter
Added jobFail state
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commitdiff
2005-05-27
jprocter
better recognition of MSF files.
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commitdiff
2005-05-27
amwaterhouse
identity changed
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commitdiff
2005-05-27
amwaterhouse
Cut and paste menus added
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commitdiff
2005-05-27
amwaterhouse
Cut and paste changes
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commitdiff
2005-05-27
amwaterhouse
C&P changes
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commitdiff
2005-05-27
amwaterhouse
Check if colos are null
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commitdiff
2005-05-27
amwaterhouse
Cut and paste changes
tree
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commitdiff
2005-05-27
amwaterhouse
Add cut and paste menus
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commitdiff
2005-05-27
amwaterhouse
CutAndPaste changed
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commitdiff
2005-05-27
jprocter
Added nicer header formatting for MSFfile output.
tree
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commitdiff
2005-05-27
jprocter
recovered changes from v 1.84
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commitdiff
2005-05-27
amwaterhouse
Check if usrCol is null
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commitdiff
2005-05-27
amwaterhouse
New cut and paste
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commitdiff
2005-05-27
jprocter
Jpredfile now uses the PileUpfile io class.
tree
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commitdiff
2005-05-27
jprocter
Addred GapChar string for convenient regex construction
tree
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commitdiff
2005-05-27
jprocter
Response to bug mantis?id=8187 - some quick hacks to...
tree
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commitdiff
2005-05-27
amwaterhouse
Remove desc for conserve graph
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commitdiff
2005-05-27
jprocter
Old MSF Format writer now renamed.
tree
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commitdiff
2005-05-26
jprocter
fixed use of PID rather than 'Comparison' Alignment...
tree
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commitdiff
2005-05-26
jprocter
fairly pointless catch exception error information...
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commitdiff
2005-05-26
jprocter
fixed redundancy Undo and allowed it to work on UNALIGN...
tree
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commitdiff
2005-05-26
jprocter
bug fix in jpred client. TreeViewer display state and...
tree
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commitdiff
2005-05-26
amwaterhouse
check for null residues
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commitdiff
2005-05-26
amwaterhouse
DOnt add Conservation graph to every residue
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commitdiff
2005-05-26
amwaterhouse
toString modified
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commitdiff
2005-05-25
amwaterhouse
reset colours added
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commitdiff
2005-05-25
amwaterhouse
more clustalx bugs fixed
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commitdiff
2005-05-25
amwaterhouse
getHexString added
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commitdiff
2005-05-25
amwaterhouse
all can threshold
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commitdiff
2005-05-25
amwaterhouse
output to textbox
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commitdiff
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