2005-01-21 |
amwaterhouse | System.out removed |
tree | commitdiff |
2005-01-21 |
amwaterhouse | SuperGroups added |
tree | commitdiff |
2005-01-17 |
amwaterhouse | Clustal align DNA spinner added |
tree | commitdiff |
2005-01-17 |
amwaterhouse | Fix overviewPanel bugs |
tree | commitdiff |
2005-01-17 |
amwaterhouse | RefreshPanels after a colour change |
tree | commitdiff |
2005-01-17 |
amwaterhouse | Dont use addToDesktop for splashscreen |
tree | commitdiff |
2005-01-17 |
amwaterhouse | ClustalX added to ColourProperties |
tree | commitdiff |
2005-01-17 |
amwaterhouse | SetSecondaryPanel |
tree | commitdiff |
2005-01-17 |
amwaterhouse | SetSecondaryPanel visible |
tree | commitdiff |
2005-01-17 |
amwaterhouse | Works out exisiting colur of a group |
tree | commitdiff |
2005-01-17 |
amwaterhouse | New class |
tree | commitdiff |
2005-01-15 |
jprocter | first jemboss clustalw client for jalview. |
tree | commitdiff |
2005-01-15 |
jprocter | bugfix for writing fasta file without gap characters. |
tree | commitdiff |
2005-01-15 |
jprocter | Implemented clustal alignment via jemboss. |
tree | commitdiff |
2005-01-14 |
amwaterhouse | Spaces |
tree | commitdiff |
2005-01-14 |
amwaterhouse | Various color bugs sorted out |
tree | commitdiff |
2005-01-14 |
amwaterhouse | Dispalys rule along top of output |
tree | commitdiff |
2005-01-14 |
amwaterhouse | Hscrollbar is shortened |
tree | commitdiff |
2005-01-14 |
amwaterhouse | Return color.white if a gap char is detected |
tree | commitdiff |
2005-01-13 |
amwaterhouse | getValue method added |
tree | commitdiff |
2005-01-13 |
amwaterhouse | Maintain PID or conservation status when changing colour |
tree | commitdiff |
2005-01-13 |
amwaterhouse | SequenceGroup is now an array |
tree | commitdiff |
2005-01-13 |
amwaterhouse | Send array of groups to renderer |
tree | commitdiff |
2005-01-13 |
amwaterhouse | Initial selection bug fixed |
tree | commitdiff |
2005-01-13 |
amwaterhouse | FindAllGroups added |
tree | commitdiff |
2005-01-13 |
amwaterhouse | Scrollbar at bottom of screen |
tree | commitdiff |
2005-01-13 |
amwaterhouse | GetResidueBoxColour altered for faster rendering |
tree | commitdiff |
2005-01-13 |
amwaterhouse | Renderer already has graphics context |
tree | commitdiff |
2005-01-13 |
amwaterhouse | getResidueBoxColour has been removed for faster rendering |
tree | commitdiff |
2005-01-13 |
amwaterhouse | Ignores gaps when searching |
tree | commitdiff |
2005-01-12 |
jprocter | random change 3 |
tree | commitdiff |
2005-01-12 |
jprocter | another dummy. |
tree | commitdiff |
2005-01-12 |
amwaterhouse | Group editing is done by control and alt key down |
tree | commitdiff |
2005-01-12 |
amwaterhouse | regular expression added |
tree | commitdiff |
2005-01-12 |
amwaterhouse | delete gaps bug fixed |
tree | commitdiff |
2005-01-12 |
amwaterhouse | must append file:/// at beginning of file launch |
tree | commitdiff |
2005-01-12 |
jprocter | irrelevant comment. |
tree | commitdiff |
2005-01-10 |
amwaterhouse | Displays number of matches found in search |
tree | commitdiff |
2004-12-17 |
amwaterhouse | jalview URL updated and authors in about file |
tree | commitdiff |
2004-12-17 |
amwaterhouse | Mac osX doesnt like isControlDown, use alt instead |
tree | commitdiff |
2004-12-17 |
amwaterhouse | All optionpane messages must be added to Desktop.desktop |
tree | commitdiff |
2004-12-17 |
amwaterhouse | If screensize is small, setSize to be the screenSize |
tree | commitdiff |
2004-12-17 |
amwaterhouse | Doesn't draw the white box at the end of a line |
tree | commitdiff |
2004-12-17 |
amwaterhouse | Fixed bug in editing by group |
tree | commitdiff |
2004-12-17 |
amwaterhouse | Hide apply and undo buttons |
tree | commitdiff |
2004-12-17 |
amwaterhouse | Use the isGap method in utils |
tree | commitdiff |
2004-12-16 |
amwaterhouse | Output new alignment bug fixed |
tree | commitdiff |
2004-12-16 |
amwaterhouse | ilen and jlen no longer +1 |
tree | commitdiff |
2004-12-16 |
amwaterhouse | Remove redundancy implemented |
tree | commitdiff |
2004-12-15 |
amwaterhouse | colours are right, but not the conservation bit!! |
tree | commitdiff |
2004-12-15 |
amwaterhouse | no need to send sequence to determine residue colour |
tree | commitdiff |
2004-12-15 |
amwaterhouse | Added for the moment, only used by ClustalxColourScheme |
tree | commitdiff |
2004-12-15 |
amwaterhouse | No need to sened sequence to determine residue colour |
tree | commitdiff |
2004-12-15 |
amwaterhouse | isGap method implemented in utils, and optimized |
tree | commitdiff |
2004-12-15 |
amwaterhouse | isGap method implemented in utils |
tree | commitdiff |
2004-12-15 |
amwaterhouse | GSlider replaces GConservationIncrementPanel |
tree | commitdiff |
2004-12-15 |
amwaterhouse | no more group editing mode. clustal implemented |
tree | commitdiff |
2004-12-15 |
amwaterhouse | Displays full id with the help of nowrap |
tree | commitdiff |
2004-12-15 |
amwaterhouse | New class |
tree | commitdiff |
2004-12-15 |
amwaterhouse | ColourScheme no longer requires sequence |
tree | commitdiff |
2004-12-15 |
amwaterhouse | End of GroupEditing, GroupDefiningMode!!!!! |
tree | commitdiff |
2004-12-15 |
amwaterhouse | Register with paintrefresher |
tree | commitdiff |
2004-12-15 |
amwaterhouse | If selection altered, update RubberbandGroup |
tree | commitdiff |
2004-12-15 |
amwaterhouse | All colours added, also sequence menu added |
tree | commitdiff |
2004-12-15 |
amwaterhouse | Right mouse brings up Popupmenu |
tree | commitdiff |
2004-12-15 |
amwaterhouse | ColourScheme findColour no longer needs sequence |
tree | commitdiff |
2004-12-15 |
amwaterhouse | If selection altered, update Rubberband group also |
tree | commitdiff |
2004-12-15 |
amwaterhouse | REpainting after graph panel setVisible fixed |
tree | commitdiff |
2004-12-15 |
amwaterhouse | SliderPanel added, edit is by mouse click |
tree | commitdiff |
2004-12-15 |
amwaterhouse | Removed, SliderPanel replaces this class |
tree | commitdiff |
2004-12-15 |
amwaterhouse | isGap method added to utils |
tree | commitdiff |
2004-12-14 |
amwaterhouse | Dont try{}catch the findColour method, lets fix this now |
tree | commitdiff |
2004-12-14 |
amwaterhouse | HTML ouput is now identical to onscreen view |
tree | commitdiff |
2004-12-14 |
amwaterhouse | Enable PID menuitem |
tree | commitdiff |
2004-12-14 |
amwaterhouse | PID Colour scheme now operational! |
tree | commitdiff |
2004-12-14 |
amwaterhouse | Add Jims name! |
tree | commitdiff |
2004-12-14 |
amwaterhouse | Getcolours is not needed ???? |
tree | commitdiff |
2004-12-14 |
amwaterhouse | Scalepanel has new constructor |
tree | commitdiff |
2004-12-14 |
amwaterhouse | Increment panel must call globalcolour or seqeuncegroup... |
tree | commitdiff |
2004-12-14 |
amwaterhouse | Allow userdefined colours for groups |
tree | commitdiff |
2004-12-14 |
amwaterhouse | Can now select groups using column selection |
tree | commitdiff |
2004-12-14 |
amwaterhouse | Userdefinedcolours works for groups as well |
tree | commitdiff |
2004-12-14 |
amwaterhouse | Hastable is not used anywhere |
tree | commitdiff |
2004-12-14 |
amwaterhouse | New class for defining groups and selections |
tree | commitdiff |
2004-12-14 |
amwaterhouse | Copy, cut and move now done via popup menu |
tree | commitdiff |
2004-12-14 |
amwaterhouse | Selection of sequences is continuous |
tree | commitdiff |
2004-12-14 |
amwaterhouse | Drawing of group and rubberband corrected |
tree | commitdiff |
2004-12-14 |
amwaterhouse | Sequence selection now done via popup menu |
tree | commitdiff |
2004-12-14 |
amwaterhouse | must allow for alignment width |
tree | commitdiff |
2004-12-14 |
amwaterhouse | Copy, move and delete now done via Popup menu |
tree | commitdiff |
2004-12-14 |
amwaterhouse | AddOrRemove function added, start and end res fixed |
tree | commitdiff |
2004-12-14 |
amwaterhouse | If groups doesnt contain group, addition is allowed |
tree | commitdiff |
2004-12-14 |
amwaterhouse | Hashtable size must allow for total-start |
tree | commitdiff |
2004-12-14 |
amwaterhouse | Choosing sort again reverses the sort order |
tree | commitdiff |
2004-12-10 |
amwaterhouse | No longer exclusive to SequenceGroups |
tree | commitdiff |
2004-12-10 |
amwaterhouse | Now allows multi coloured HTML output |
tree | commitdiff |
2004-12-10 |
amwaterhouse | Colours set globally in viewport |
tree | commitdiff |
2004-12-10 |
amwaterhouse | Looks to viewportfor global settings |
tree | commitdiff |
2004-12-10 |
amwaterhouse | Addition of rubberband |
tree | commitdiff |
2004-12-10 |
amwaterhouse | Now draws group, rubberband |
tree | commitdiff |
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