JAL-3161 limit tooltip and status updates to visible columns
[jalview.git] / src / jalview /
2018-02-07 gmungocJAL-2808 ensure pattern field re-enabled when needed...
2018-02-07 Jim ProcterJAL-2902 - isBusy and hasMapping methods so client...
2018-02-07 Jim ProcterJAL-2780 JAL-2781 fix javadoc in line with behaviour...
2018-02-07 Jim ProcterJAL-2780 JAL-2781 JAL-2902 refactor ‘OK’ action to...
2018-02-07 Jim ProcterJAL-2780 JAL-2781 don’t assume contiguous mapping to...
2018-02-06 kiramtMerge branch 'develop' into feature/JAL-2759 feature/JAL-2759
2018-02-05 Jim ProcterJAL-2780 JAL-2781 programmatically select structures...
2018-02-05 Jim ProcterJAL-2780 JAL-2871 only look up current table view once
2018-02-05 Jim ProcterJAL-2780 JAL-2781 - patch and first test for AlignmentI...
2018-02-05 kiramtJAL-2759 Fix errant RangeElementsIterator (unit tests...
2018-02-05 kiramtJAL-2759 Rename getBoundedStartIterator
2018-02-05 kiramtJAL-2759 Changes to StartRegionIterator after review
2018-02-05 kiramtJAL-2788 possible adjustments to sequence accesses
2018-02-05 gmungocJAL-2897 more informative description on synonymous...
2018-02-05 gmungocMerge branch 'spikes/mungo' into trialMerge
2018-02-05 gmungocJAL-2897 more informative description on synonymous...
2018-02-02 gmungocJAL-984 merged to spikes-mungo
2018-02-02 gmungocMerge branch 'feature/JAL-984splitAdjuster' into featur...
2018-02-02 gmungocJAL-2899 asynchronous Jmol colour updates bug/JAL-2899
2018-02-02 gmungocJAL-984 use cursor for drag regions to adjust annotatio...
2018-02-02 gmungocJAL-984 better behaved panel height adjuster
2018-02-01 gmungocJAL-2899 update structure and overview on slider drag...
2018-02-01 kiramtJAL-2759 Added in JAL-2851 fix
2018-02-01 kiramtJAL-2759 use right iterator for getVisibleColsIterator
2018-01-31 kiramtJAL-2759 Rationalise VisibleColsIterator and HiddenCols...
2018-01-31 kiramtJAL-2759 Generalised HiddenColsIterator naming
2018-01-31 gmungocJAL-2792 added tooltip to menu items in case of truncation
2018-01-31 kiramtJAL-2759 minor refactor to hiding bitsets
2018-01-30 gmungocJAL-1793 update spike build to latest incl stop and...
2018-01-30 gmungocJAL-2898 show 'stop_gained' variants on peptide sequences
2018-01-30 kiramtJAL-2759 Add missing hiddenColumns empty check
2018-01-30 kiramtJAL-2759 updateForDeletedRegion no longer needed
2018-01-30 gmungocJAL-2897 generate peptide variants for synonymous codon...
2018-01-30 gmungocJAL-2897 formatting change only prior to functional...
2018-01-30 kiramtJAL-2759 Rationalising hidden cols cursor, and sorting...
2018-01-30 kiramtJAL-2759 comment
2018-01-30 kiramtJAL-2759 Additional tests and tweaks to numColumns...
2018-01-30 kiramtJAL-2759 Keep numColumns up to date
2018-01-29 kiramtJAL-2759 remove unneeded cast
2018-01-29 kiramtJAL-2759 Combine findRegionForColumn code in HiddenColu...
2018-01-29 kiramtJAL-2759 numColumns reset
2018-01-29 kiramtJAL-2759 remove redundant hiddenColumns.clear()
2018-01-29 kiramtJAL-2759 Tidy
2018-01-29 kiramtJAL-2759 make a new cursor instead of resetting, update...
2018-01-29 kiramtJAL-2759 Fix unintended type change
2018-01-29 gmungocJAL-2743 recoded EnsemblLookup without lambda expressio...
2018-01-26 kiramtJAL-2778 try another way to draw sequences with reduced...
2018-01-26 gmungocMerge branch 'develop' into features/JAL-1793VCF
2018-01-26 kiramtJAL-2778 tightened up use of resetAlignmentDims
2018-01-25 kiramtJAL-2778 Tidy
2018-01-25 kiramtJAL-2778 added JAL-2851 fix to avoid confusion
2018-01-25 kiramtJAL-2778 Reinstate id width adjuster
2018-01-22 kiramtJAL-2579 Moved locateVisibleStartOfSequence to Sequence...
2018-01-22 kiramtJAL-2759 Various minor HiddenColumns updates after...
2018-01-19 kiramtJAL-2759 Changes to getVisibleSequenceStrings after...
2018-01-19 kiramtJAL-2759 Moved propagateInsertions out of HiddenColumns
2018-01-19 kiramtJAL-2759 Update to getVisibleStartAndEndIndex after...
2018-01-18 kiramtJAL-2759 change subtractVisibleColumns and removal...
2018-01-18 gmungocJAL-2810 JAL-2886 i18n
2018-01-18 gmungocJAL-2679 update query id to actual case of retrieved...
2018-01-18 kiramtJAL-2759 Updated test
2018-01-18 kiramtJAL-2759 unit tests (incomplete)
2018-01-17 gmungocJAL-2679 case-insensitive comparison of query and retri...
2018-01-16 gmungocJAL-2679 use object_type=Transcript for lookup of Paren...
2018-01-16 kiramtJAL-2759 setup hideBitSet over range for hideInsertions
2018-01-16 gmungocJAL-2885 uniprot now https, uniprot/ensembl/pfam/xfam...
2018-01-16 gmungocJAL-1270 JAL-2885 clear properties before load
2018-01-16 kiramtJAL-2759 Moved alignment annotation code out of HiddenC...
2018-01-16 kiramtJAL-2759 Replaced StringBuffer with StringBuilder;...
2018-01-15 kiramtJAL-2759 More compact iterator usage; after review
2018-01-15 kiramtJAL-2759 First pass instantiate hiddenColumns collectio...
2018-01-15 kiramtJAL-2759 getVisContigsIterator returns VisibleContigsIt...
2018-01-15 kiramtJAL-2759 Rename hideInsertionsFor to hideList, after...
2018-01-15 kiramtJAL-2759 Refactor of hideInsertionsFor after review
2018-01-15 kiramtJAL-2759 Simplified HiddenColumns constructor after...
2018-01-15 kiramtJAL-2759 Changed VisibleColsCollection constructor...
2018-01-15 kiramtJAL-2759 Minor doc and naming changes
2018-01-15 kiramtJAL-2759 Updated absoluteToVisibleColumn doc (prev...
2018-01-15 kiramtJAL-2759 Rename findColumnPosition and adjustForHiddenC...
2018-01-15 kiramtJAL-2759 Renamed BoundedHiddenColsIterator to HiddenCol...
2018-01-15 kiramtJAL-2759 Comments and renaming for has(Many)HiddenColum...
2018-01-15 kiramtJAL-2759 Tidy up javadoc and naming in HiddenColumnsCur...
2018-01-15 kiramtJAL-2759 Update to getHiddenBoundaryRight + unit test...
2018-01-15 kiramtJAL-2759 Updates following review
2018-01-10 gmungocJAL-2865 unhelpful System.gc() calls removed bug/JAL-2865removeGC
2018-01-10 gmungocJAL-1793 update spike branch to latest
2018-01-10 gmungocJAL-2791 ignore feature type visibility in getColor()
2018-01-10 kiramtJAL-797: Added keybindings so that ctrl- or cmd-W close...
2018-01-09 gmungocJAL-2843 unit tests for Save/Load colours and filters...
2018-01-09 gmungocJAL-2808 small tweaks to api / Javadoc
2018-01-08 gmungocJAL-2069 fix setting initial value of slider from threshold
2017-12-14 gmungocJAL-2843 missed Castor class
2017-12-14 gmungocJAL-2843 save/restore colour feature by attribute,...
2017-12-14 gmungocJAL-2879 save/restore feature sub-attributes in Jalview...
2017-12-14 gmungocJAL-2843 missed Castor class
2017-12-14 gmungocJAL-2843 and Castor metadata file for latest changes
2017-12-14 gmungocJAL-2843 schema and code changes to save colour by...
2017-12-13 gmungocJAL-2843 add isByAttribute to interface for convenience
2017-12-11 gmungocJAL-2843 add colour by attribute, and no value colour...
2017-12-08 gmungocJAL-2843 read/write feature filters from/to Jalview...
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