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maxIdLength redundant, deleteCols, trimLeft, removeGaps moved to Commands
[jalview.git]
/
src
/
jalview
/
2006-10-24
amwaterhouse
maxIdLength redundant, deleteCols, trimLeft, removeGaps...
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commitdiff
2006-10-24
amwaterhouse
Uses RemoveGapsCommand
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commitdiff
2006-10-24
amwaterhouse
Remove variables not used
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commitdiff
2006-10-24
amwaterhouse
Remove unneccessary import
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commitdiff
2006-10-24
amwaterhouse
Make everything final
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commitdiff
2006-10-24
amwaterhouse
New accelerators
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commitdiff
2006-10-24
amwaterhouse
Commented out for compilation
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commitdiff
2006-10-24
amwaterhouse
setOrder is public
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commitdiff
2006-10-24
amwaterhouse
Commands which can be done, or undone
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commitdiff
2006-10-24
amwaterhouse
Its historycvs remove jalview/datamodel/HistoryItem...
tree
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commitdiff
2006-10-24
jprocter
fixes bug reported by Christopher Tan (help@jalview...
tree
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commitdiff
2006-10-18
amwaterhouse
Wait for response from server before next sequence
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commitdiff
2006-10-18
amwaterhouse
showqual, showcons never used
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commitdiff
2006-10-18
amwaterhouse
remove html and body from tooltip
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commitdiff
2006-10-18
amwaterhouse
new feature args
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commitdiff
2006-10-18
amwaterhouse
Can set description for new features
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commitdiff
2006-10-18
amwaterhouse
Faded anntotations when recalculating
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commitdiff
2006-10-18
amwaterhouse
set conserve and quality null if outofmemory
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commitdiff
2006-10-18
amwaterhouse
No longer a FeatureListener
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commitdiff
2006-10-18
amwaterhouse
parseDescriptionHTML
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commitdiff
2006-10-18
amwaterhouse
draw text after linkimage
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commitdiff
2006-10-18
amwaterhouse
Remove system.out
tree
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commitdiff
2006-10-15
jprocter
fixed array out of bounds exception in copy constructor
tree
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commitdiff
2006-10-12
amwaterhouse
showQuality may be updated during archive file load
tree
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commitdiff
2006-10-12
amwaterhouse
Convenient function findEndRes
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commitdiff
2006-10-12
amwaterhouse
Add features from Popupmenu
tree
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commitdiff
2006-10-12
amwaterhouse
Overview may request index beyond alignment height
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commitdiff
2006-10-12
amwaterhouse
Use i, not index if not representedSeqs
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commitdiff
2006-10-12
amwaterhouse
If conservation is null, disable Blosum62 and conservat...
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commitdiff
2006-10-12
amwaterhouse
Annotasiont[j] might be null
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commitdiff
2006-10-12
amwaterhouse
Local adjustForhiddenSeqs routine
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commitdiff
2006-10-12
amwaterhouse
RepresentGroup count items
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commitdiff
2006-10-12
amwaterhouse
Null element checked
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commitdiff
2006-10-12
amwaterhouse
HiddenSequences now array, not hashtable
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commitdiff
2006-10-12
amwaterhouse
Comment out debug to compile applet
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commitdiff
2006-10-11
jprocter
fixes exception (array index out of bounds - due to...
tree
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commitdiff
2006-10-10
jprocter
refined id matching to pick the closest match (by lengt...
tree
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commitdiff
2006-10-10
jprocter
debug message bugfix on duplicate tree leaf names.
tree
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commitdiff
2006-10-10
amwaterhouse
No need to find index when deleting
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commitdiff
2006-10-10
amwaterhouse
Calculate alWidth earlier
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commitdiff
2006-10-10
amwaterhouse
Remove growing hashtable
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commitdiff
2006-10-10
amwaterhouse
Check on null consensus
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commitdiff
2006-10-10
jprocter
bugfix for dodgy trees which contain the same leafname...
tree
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commitdiff
2006-10-10
amwaterhouse
Must repaint whole alignPanel
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commitdiff
2006-10-10
amwaterhouse
MaxResidue must be at least 2
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commitdiff
2006-10-10
amwaterhouse
Remove unneccessary separator
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commitdiff
2006-10-10
amwaterhouse
Only getGroups once if groupEditingcvs update
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commitdiff
2006-10-10
amwaterhouse
1.1 compatible
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commitdiff
2006-10-10
amwaterhouse
Use AAFrequency final keys
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commitdiff
2006-10-10
amwaterhouse
SetTooltip empty
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commitdiff
2006-10-10
amwaterhouse
Optimized
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commitdiff
2006-10-10
amwaterhouse
aaIndex replaces aaHash
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commitdiff
2006-10-10
amwaterhouse
static final strings for consensus keys
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commitdiff
2006-10-10
amwaterhouse
Consensus and conservation updated in threads
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commitdiff
2006-10-09
jprocter
fixed log4j complaints for vamsas logging (again)
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commitdiff
2006-10-09
jprocter
fixed log4j complaints for vamsas logging.
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commitdiff
2006-10-09
jprocter
imported Vamsas bindings and alpha vamsas client code...
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commitdiff
2006-10-09
jprocter
set firstColumn property for an alignmentView object.
tree
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commitdiff
2006-10-09
jprocter
fixed getCompactAlignment method to return proper cigar...
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commitdiff
2006-10-06
jprocter
Added filter so that input to a JPred job is *solely...
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commitdiff
2006-10-06
jprocter
javadoc
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commitdiff
2006-10-06
jprocter
new getVisibleContigs method mirrors the getVisibleCont...
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commitdiff
2006-10-06
amwaterhouse
AAFrequency optimized
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commitdiff
2006-10-06
amwaterhouse
Set consensus as hashtble[]
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commitdiff
2006-10-05
amwaterhouse
Multiple Views
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commitdiff
2006-10-05
amwaterhouse
BatchSize now 10
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commitdiff
2006-10-05
amwaterhouse
OutOfMemoryError test
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commitdiff
2006-10-05
amwaterhouse
TabbedPanes for views
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commitdiff
2006-10-05
amwaterhouse
lower case available
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commitdiff
2006-10-05
amwaterhouse
AlignFrame must take width and height
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commitdiff
2006-10-05
amwaterhouse
Sequenceset may be empty, multiple views
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commitdiff
2006-10-05
amwaterhouse
DEFAULT_WIDTH
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commitdiff
2006-10-03
amwaterhouse
Check annotation is editable
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commitdiff
2006-10-03
amwaterhouse
Send DAS requests in batches of 20
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commitdiff
2006-10-03
amwaterhouse
DB seqs may be lower or upper case
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commitdiff
2006-10-03
amwaterhouse
BoldFont upperCase
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commitdiff
2006-10-03
amwaterhouse
Remove empty() from feature ToolTip
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commitdiff
2006-10-03
amwaterhouse
Check selection scroll beyond aligmnment height
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commitdiff
2006-10-03
amwaterhouse
Check on vscrollMax values
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commitdiff
2006-10-03
amwaterhouse
upperCaseBold
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commitdiff
2006-10-03
amwaterhouse
TurnColour bug on popupmenu applet
tree
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commitdiff
2006-09-27
jprocter
fixed tree building exception when one residue or a...
tree
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commitdiff
2006-09-18
amwaterhouse
Draw hidden column marker correctly
tree
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commitdiff
2006-09-18
amwaterhouse
click node to select sequences
tree
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commitdiff
2006-09-15
amwaterhouse
Simplified schema
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commitdiff
2006-09-12
amwaterhouse
hideSequence hide all before recalc consensus
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commitdiff
2006-09-12
amwaterhouse
Allow alt for group editing
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commitdiff
2006-09-12
amwaterhouse
For now ignore middle mouse font resize on Mac applet
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commitdiff
2006-09-12
amwaterhouse
Allow alt button for Mac applet group editing
tree
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commitdiff
2006-09-11
amwaterhouse
Comment out lower case colouring for bug fix release
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commitdiff
2006-09-11
amwaterhouse
Remove system.outs
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commitdiff
2006-09-11
amwaterhouse
get idWidth should use italic font when getting size
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commitdiff
2006-09-11
amwaterhouse
Error message if file not found moved for headless...
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commitdiff
2006-09-11
amwaterhouse
visWidth allows borders to be drawn around offscreen...
tree
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commitdiff
2006-09-11
amwaterhouse
Remove system.out
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commitdiff
2006-09-11
amwaterhouse
getVisibleIdWidth() for making images
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commitdiff
2006-09-07
jprocter
added copy consensus sequence to consensus annotation...
tree
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commitdiff
2006-09-05
jprocter
getVisibleContigs() returns start and end positions...
tree
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commitdiff
2006-09-05
jprocter
javadoc on contigs
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commitdiff
2006-09-01
amwaterhouse
Dont look for middle mouse on the Mac
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commitdiff
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