git://source.jalview.org
/
jalview.git
/ history
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
first
⋅
prev
⋅
next
Merge branch 'Jalview-BH/JAL-3026' into tasks/JAL-3033_jalviewjs_ant
[jalview.git]
/
src
/
jalview
/
2018-01-30
kiramt
JAL-2759 updateForDeletedRegion no longer needed
tree
|
commitdiff
2018-01-30
gmungoc
JAL-2897 generate peptide variants for synonymous codon...
tree
|
commitdiff
2018-01-30
gmungoc
JAL-2897 formatting change only prior to functional...
tree
|
commitdiff
2018-01-30
kiramt
JAL-2759 Rationalising hidden cols cursor, and sorting...
tree
|
commitdiff
2018-01-30
kiramt
JAL-2759 comment
tree
|
commitdiff
2018-01-30
kiramt
JAL-2759 Additional tests and tweaks to numColumns...
tree
|
commitdiff
2018-01-30
kiramt
JAL-2759 Keep numColumns up to date
tree
|
commitdiff
2018-01-29
kiramt
JAL-2759 remove unneeded cast
tree
|
commitdiff
2018-01-29
kiramt
JAL-2759 Combine findRegionForColumn code in HiddenColu...
tree
|
commitdiff
2018-01-29
kiramt
JAL-2759 numColumns reset
tree
|
commitdiff
2018-01-29
kiramt
JAL-2759 remove redundant hiddenColumns.clear()
tree
|
commitdiff
2018-01-29
kiramt
JAL-2759 Tidy
tree
|
commitdiff
2018-01-29
kiramt
JAL-2759 make a new cursor instead of resetting, update...
tree
|
commitdiff
2018-01-29
kiramt
JAL-2759 Fix unintended type change
tree
|
commitdiff
2018-01-29
gmungoc
JAL-2743 recoded EnsemblLookup without lambda expressio...
tree
|
commitdiff
2018-01-26
kiramt
JAL-2778 try another way to draw sequences with reduced...
tree
|
commitdiff
2018-01-26
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
tree
|
commitdiff
2018-01-26
kiramt
JAL-2778 tightened up use of resetAlignmentDims
tree
|
commitdiff
2018-01-25
kiramt
JAL-2778 Tidy
tree
|
commitdiff
2018-01-25
kiramt
JAL-2778 added JAL-2851 fix to avoid confusion
tree
|
commitdiff
2018-01-25
kiramt
JAL-2778 Reinstate id width adjuster
tree
|
commitdiff
2018-01-22
kiramt
JAL-2579 Moved locateVisibleStartOfSequence to Sequence...
tree
|
commitdiff
2018-01-22
kiramt
JAL-2759 Various minor HiddenColumns updates after...
tree
|
commitdiff
2018-01-19
kiramt
JAL-2759 Changes to getVisibleSequenceStrings after...
tree
|
commitdiff
2018-01-19
kiramt
JAL-2759 Moved propagateInsertions out of HiddenColumns
tree
|
commitdiff
2018-01-19
kiramt
JAL-2759 Update to getVisibleStartAndEndIndex after...
tree
|
commitdiff
2018-01-18
kiramt
JAL-2759 change subtractVisibleColumns and removal...
tree
|
commitdiff
2018-01-18
gmungoc
JAL-2810 JAL-2886 i18n
tree
|
commitdiff
2018-01-18
gmungoc
JAL-2679 update query id to actual case of retrieved...
tree
|
commitdiff
2018-01-18
kiramt
JAL-2759 Updated test
tree
|
commitdiff
2018-01-18
kiramt
JAL-2759 unit tests (incomplete)
tree
|
commitdiff
2018-01-17
gmungoc
JAL-2679 case-insensitive comparison of query and retri...
tree
|
commitdiff
2018-01-16
gmungoc
JAL-2679 use object_type=Transcript for lookup of Paren...
tree
|
commitdiff
2018-01-16
kiramt
JAL-2759 setup hideBitSet over range for hideInsertions
tree
|
commitdiff
2018-01-16
gmungoc
JAL-2885 uniprot now https, uniprot/ensembl/pfam/xfam...
tree
|
commitdiff
2018-01-16
gmungoc
JAL-1270 JAL-2885 clear properties before load
tree
|
commitdiff
2018-01-16
kiramt
JAL-2759 Moved alignment annotation code out of HiddenC...
tree
|
commitdiff
2018-01-16
kiramt
JAL-2759 Replaced StringBuffer with StringBuilder;...
tree
|
commitdiff
2018-01-15
kiramt
JAL-2759 More compact iterator usage; after review
tree
|
commitdiff
2018-01-15
kiramt
JAL-2759 First pass instantiate hiddenColumns collectio...
tree
|
commitdiff
2018-01-15
kiramt
JAL-2759 getVisContigsIterator returns VisibleContigsIt...
tree
|
commitdiff
2018-01-15
kiramt
JAL-2759 Rename hideInsertionsFor to hideList, after...
tree
|
commitdiff
2018-01-15
kiramt
JAL-2759 Refactor of hideInsertionsFor after review
tree
|
commitdiff
2018-01-15
kiramt
JAL-2759 Simplified HiddenColumns constructor after...
tree
|
commitdiff
2018-01-15
kiramt
JAL-2759 Changed VisibleColsCollection constructor...
tree
|
commitdiff
2018-01-15
kiramt
JAL-2759 Minor doc and naming changes
tree
|
commitdiff
2018-01-15
kiramt
JAL-2759 Updated absoluteToVisibleColumn doc (prev...
tree
|
commitdiff
2018-01-15
kiramt
JAL-2759 Rename findColumnPosition and adjustForHiddenC...
tree
|
commitdiff
2018-01-15
kiramt
JAL-2759 Renamed BoundedHiddenColsIterator to HiddenCol...
tree
|
commitdiff
2018-01-15
kiramt
JAL-2759 Comments and renaming for has(Many)HiddenColum...
tree
|
commitdiff
2018-01-15
kiramt
JAL-2759 Tidy up javadoc and naming in HiddenColumnsCur...
tree
|
commitdiff
2018-01-15
kiramt
JAL-2759 Update to getHiddenBoundaryRight + unit test...
tree
|
commitdiff
2018-01-15
kiramt
JAL-2759 Updates following review
tree
|
commitdiff
2018-01-10
gmungoc
JAL-2865 unhelpful System.gc() calls removed
bug/JAL-2865removeGC
tree
|
commitdiff
2018-01-10
gmungoc
JAL-1793 update spike branch to latest
tree
|
commitdiff
2018-01-10
gmungoc
JAL-2791 ignore feature type visibility in getColor()
tree
|
commitdiff
2018-01-10
kiramt
JAL-797: Added keybindings so that ctrl- or cmd-W close...
tree
|
commitdiff
2018-01-09
gmungoc
JAL-2843 unit tests for Save/Load colours and filters...
tree
|
commitdiff
2018-01-09
gmungoc
JAL-2808 small tweaks to api / Javadoc
tree
|
commitdiff
2018-01-08
gmungoc
JAL-2069 fix setting initial value of slider from threshold
tree
|
commitdiff
2017-12-14
gmungoc
JAL-2843 missed Castor class
tree
|
commitdiff
2017-12-14
gmungoc
JAL-2843 save/restore colour feature by attribute,...
tree
|
commitdiff
2017-12-14
gmungoc
JAL-2879 save/restore feature sub-attributes in Jalview...
tree
|
commitdiff
2017-12-14
gmungoc
JAL-2843 missed Castor class
tree
|
commitdiff
2017-12-14
gmungoc
JAL-2843 and Castor metadata file for latest changes
tree
|
commitdiff
2017-12-14
gmungoc
JAL-2843 schema and code changes to save colour by...
tree
|
commitdiff
2017-12-13
gmungoc
JAL-2843 add isByAttribute to interface for convenience
tree
|
commitdiff
2017-12-11
gmungoc
JAL-2843 add colour by attribute, and no value colour...
tree
|
commitdiff
2017-12-08
gmungoc
JAL-2843 read/write feature filters from/to Jalview...
tree
|
commitdiff
2017-12-08
gmungoc
JAL-2843 refactor / tidy for feature filter input/output
tree
|
commitdiff
2017-12-08
gmungoc
JAL-2843 methods relocated
tree
|
commitdiff
2017-12-08
gmungoc
JAL-2843 toStableString, fromString for Jalview feature...
tree
|
commitdiff
2017-12-08
gmungoc
JAL-2843 FeatureRenderer.getFeatureFilters returns...
tree
|
commitdiff
2017-12-05
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
tree
|
commitdiff
2017-12-04
gmungoc
JAL-2808 JAL-2850 update spike build to latest
tree
|
commitdiff
2017-12-04
gmungoc
Merge branch 'spikes/mungo' into features/JAL-1793VCF
tree
|
commitdiff
2017-12-04
gmungoc
JAL-2850 JAL-1766 option to load contig sequence refere...
tree
|
commitdiff
2017-12-04
gmungoc
JAL-2845 locate reverse strand insertion as complement...
tree
|
commitdiff
2017-12-04
gmungoc
JAL-2835 small refactor to only extract transcript...
tree
|
commitdiff
2017-12-01
gmungoc
JAL-2835 spike updated to latest (use specific SO term...
tree
|
commitdiff
2017-12-01
gmungoc
JAL-2835 refactored to extract specific consequence...
tree
|
commitdiff
2017-12-01
gmungoc
JAL-2792 sort feature attributes for output, not for...
tree
|
commitdiff
2017-12-01
gmungoc
JAL-2835 additional sub-terms of sequence_variant added
tree
|
commitdiff
2017-11-30
gmungoc
JAL-2850 improved use of htsjdk api to read contig...
tree
|
commitdiff
2017-11-30
gmungoc
JAL-1766 additional tests for stub htsjdk wrapper
tree
|
commitdiff
2017-11-30
Jim Procter
JAL-2849 JAL-2863 file format preferences TODO
tree
|
commitdiff
2017-11-30
Jim Procter
JAL-2849 fix
tree
|
commitdiff
2017-11-28
Jim Procter
Merge branch 'bug/JAL-2859_uniprottowrongpdbid' into...
tree
|
commitdiff
2017-11-28
Jim Procter
Merge branch 'bug/JAL-2740' into develop
tree
|
commitdiff
2017-11-28
Jim Procter
Merge branch 'bug/JAL-2827' into develop
tree
|
commitdiff
2017-11-28
Jim Procter
Merge branch 'bug/JAL-2842' into develop
tree
|
commitdiff
2017-11-28
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
tree
|
commitdiff
2017-11-28
gmungoc
JAL-2850 MapList.isToForwardStrand added
tree
|
commitdiff
2017-11-27
Jim Procter
JAL-2859 disambiguate with PDB ID if no file path
bug/JAL-2859_uniprottowrongpdbid
tree
|
commitdiff
2017-11-27
gmungoc
JAL-2850 VCFLoader refactored to load VCF to contig...
tree
|
commitdiff
2017-11-24
gmungoc
JAL-2808 update spike to latest
tree
|
commitdiff
2017-11-24
gmungoc
JAL-2808 refactoring to better handler filter by Score...
tree
|
commitdiff
2017-11-24
gmungoc
JAL-2808 relocate constants for compiler, add COLUMN_CO...
tree
|
commitdiff
2017-11-24
gmungoc
JAL-2808 refine FeatureMatcher interface and matcher...
tree
|
commitdiff
2017-11-24
gmungoc
JAL-2808 don't cache i18n - MessageManager already...
tree
|
commitdiff
next