git://source.jalview.org
/
jalview.git
/ history
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
first
⋅
prev
⋅
next
JAL-629 Auto and Default count incrementer args. Flags for output filename replacements.
[jalview.git]
/
src
/
jalview
/
2022-11-30
Jim Procter
JAL-2353 patch for Ensembl refs from uniprot - needs...
tree
|
commitdiff
2022-11-29
Ben Soares
JAL-4101 Updated DEFAULT_RFAM_BASEURL
tree
|
commitdiff
2022-11-23
Ben Soares
JAL-629 Doing things with the command line arguments
tree
|
commitdiff
2022-11-16
Ben Soares
Merge branch 'improvement/JAL-3416_default_to_LIVE_DRAG...
tree
|
commitdiff
2022-11-16
Ben Soares
JAL-3416 make flatlaf default for linux
improvement/JAL-3416_default_to_LIVE_DRAG_MODE_for_flatlaf
tree
|
commitdiff
2022-11-16
Ben Soares
JAL-4019 finalised a boolean option and tidied some...
tree
|
commitdiff
2022-11-14
Ben Soares
JAL-4019 Make diagnostic message debug level
tree
|
commitdiff
2022-11-13
Ben Soares
JAL-4019 small but important corrections to array order...
tree
|
commitdiff
2022-11-13
Ben Soares
JAL-4019 improvement to short sequence nucleotide detec...
tree
|
commitdiff
2022-11-10
Ben Soares
JAL-4019 Nucleotide Ambiguity Colour Scheme added....
tree
|
commitdiff
2022-11-09
Ben Soares
JAL-3416 Add necessary logo to non-internal Frames
tree
|
commitdiff
2022-11-09
Ben Soares
Merge branch 'improvement/JAL-3416_default_to_LIVE_DRAG...
tree
|
commitdiff
2022-11-09
Ben Soares
JAL-3416 Add necessary logo to non-internal Frames
tree
|
commitdiff
2022-11-09
Ben Soares
Merge branch 'improvement/JAL-3416_default_to_LIVE_DRAG...
tree
|
commitdiff
2022-11-09
Ben Soares
JAL-3416 Remove all JFrame/JInternalFrame icons (set...
tree
|
commitdiff
2022-11-09
Ben Soares
Merge branch 'bug/JAL-1988_JAL-3772_improved_quit_handl...
tree
|
commitdiff
2022-11-09
Ben Soares
JAL-1988 JAL-3772 Test for FORCE_QUIT whilst saving...
bug/JAL-1988_JAL-3772_improved_quit_handling
tree
|
commitdiff
2022-11-08
Ben Soares
Merge branch 'bug/JAL-1988_JAL-3772_improved_quit_handl...
tree
|
commitdiff
2022-11-08
Ben Soares
JAL-1988 JAL-3776 Formatting JvOptionPane
tree
|
commitdiff
2022-11-08
Ben Soares
JAL-1988 JAL-3772 Fixes highlighted by tests
tree
|
commitdiff
2022-11-04
Ben Soares
JAL-3416 Added logoIcon to quit (and potentially other...
tree
|
commitdiff
2022-11-04
Ben Soares
JAL-1998 JAL-3772 JAL-3416 Merge conflict resolution...
tree
|
commitdiff
2022-11-03
Ben Soares
JAL-3416 File Chooser iconified, JvOptionPanes iconifie...
tree
|
commitdiff
2022-11-03
Jim Procter
JAL-3855 JAL-4095 simple picking of ranges adjacent...
tree
|
commitdiff
2022-11-03
Ben Soares
JAL-1988 JAL-3772 Allow other window closing dialogs...
tree
|
commitdiff
2022-11-03
Ben Soares
JAL-3416 More JInternalFrame icons
tree
|
commitdiff
2022-11-03
Ben Soares
JAL-1988 JAL-3772 Tidying of unspecified Callable decla...
tree
|
commitdiff
2022-11-03
Ben Soares
JAL-3416 Start to add JInternalFrame icons (to replace...
tree
|
commitdiff
2022-11-02
Ben Soares
JAL-1988 JAL-3772 Moving packages to somewhere more...
tree
|
commitdiff
2022-11-01
Ben Soares
JAL-3416 set flatlaf default drag mode to LIVE_DRAG_MODE
tree
|
commitdiff
2022-11-01
Ben Soares
JAL-1988 JAL-3772 Change default alignmentviewport...
tree
|
commitdiff
2022-10-30
Jim Procter
JAL-2349 JAL-3855 bizarre resizing exception when resiz...
tree
|
commitdiff
2022-10-30
Jim Procter
JAL-4091 lines to associate rows sharing same sequence...
tree
|
commitdiff
2022-10-30
Jim Procter
JAL-2353 patch for Ensembl refs from uniprot - needs...
tree
|
commitdiff
2022-10-29
Ben Soares
JAL-1988 JAL-3772 removed a debugging log line
tree
|
commitdiff
2022-10-29
Jim Procter
JAL-4094 shift+click drag up/down to resize all annotat...
tree
|
commitdiff
2022-10-29
Jim Procter
JAL-4091 - noodling about including the names for seque...
tree
|
commitdiff
2022-10-29
Jim Procter
Merge branch 'features/JAL-4061_and_JAL-4062_findselect...
tree
|
commitdiff
2022-10-28
Ben Soares
JAL-1988 JAL-3772 Removed 'Wait' button from waitDialog...
tree
|
commitdiff
2022-10-28
Jim Procter
JAL-2349 allow contact matrix to provide labels for...
tree
|
commitdiff
2022-10-28
Jim Procter
JAL-4086 commented out attempt to create measurement...
tree
|
commitdiff
2022-10-28
Jim Procter
JAL-4089 use column selection to superpose if 4 or...
tree
|
commitdiff
2022-10-28
Jim Procter
JAL-2961 centerViewOn command for structure viewers...
tree
|
commitdiff
2022-10-28
Jim Procter
Merge branch 'features/r2_11_2_alphafold/JAL-2349_JAL...
tree
|
commitdiff
2022-10-28
Ben Soares
JAL-1988 JAL-3772 Fixed wait between waitDialog appeara...
tree
|
commitdiff
2022-10-27
Ben Soares
JAL-1988 Allow generic Container object in JvOptionPane...
tree
|
commitdiff
2022-10-27
Ben Soares
Merge branch 'develop' into bug/JAL-1988_JAL-3772_impro...
tree
|
commitdiff
2022-10-27
Ben Soares
JAL-4083 don't need globalUseScriptWait after all,...
bug/JAL-4083_exceptions_for_multiple_residue_highlights_in_jmol
tree
|
commitdiff
2022-10-27
Ben Soares
JAL-4083 only set globalUseScriptWait if needed
tree
|
commitdiff
2022-10-27
Ben Soares
JAL-4083 Use jmolViewer.scriptWait instead of jmolViewe...
tree
|
commitdiff
2022-10-26
Jim Procter
JAL-4086 quick and dirty mouseovers on ruler highlighti...
tree
|
commitdiff
2022-10-26
Ben Soares
Merge branch 'features/r2_11_2_alphafold/JAL-2349_JAL...
tree
|
commitdiff
2022-10-25
Ben Soares
JAL-3772 silly NPE error fixed
tree
|
commitdiff
2022-10-25
Ben Soares
JAL-3416 Making FlatLaF default for macs due to a probl...
tree
|
commitdiff
2022-10-24
Ben Soares
JAL-1988 JAL-3772 wait timer working first time but...
tree
|
commitdiff
2022-10-24
Ben Soares
JAL-1988 JAL-3772 Non-blocking modal dialogs for unsave...
tree
|
commitdiff
2022-10-22
Jim Procter
JAL-2349 JAL-3855 highlight residues associated with...
tree
|
commitdiff
2022-10-21
Jim Procter
JAL-2349 JAL-3855 fix failing tests
tree
|
commitdiff
2022-10-21
Jim Procter
JAL-2349 JAL-3855 experiment masking hidden columns...
tree
|
commitdiff
2022-10-21
Jim Procter
JAL-4033 - heuristic threshold for pAE matrix - mark...
tree
|
commitdiff
2022-10-20
Jim Procter
JAL-2349 formatting/pick correct exception
tree
|
commitdiff
2022-10-20
Jim Procter
JAL-2349 JAL-3855 off by one and daft return
tree
|
commitdiff
2022-10-20
Jim Procter
JAL-2349 avoid div-by-zero when annotation height is...
tree
|
commitdiff
2022-10-20
Jim Procter
JAL-2349 JAL-3855 adapt renderer for AlignmentI.getCont...
tree
|
commitdiff
2022-10-20
Jim Procter
JAL-2349 JAL-3855 ContactListI.getPosition() to recover...
tree
|
commitdiff
2022-10-20
Jim Procter
JAL-2349 JAL-3855 experimenting with filtering columns...
tree
|
commitdiff
2022-10-20
Jim Procter
JAL-3855 JAL-2349 AlignmentI.getContactList takes care...
tree
|
commitdiff
2022-10-20
Jim Procter
JAL-4033 fix drag selections and distinguish row/column...
tree
|
commitdiff
2022-10-20
Jim Procter
JAL-2349 (still buggy) interactive selection - time...
tree
|
commitdiff
2022-10-20
Jim Procter
JAL-2349 tooltip reports value from contact range
tree
|
commitdiff
2022-10-20
Jim Procter
JAL-2349 adjusted range calculation to be inclusive...
tree
|
commitdiff
2022-10-20
Jim Procter
JAL-2349 debugged click/drag and added yellow rubber...
tree
|
commitdiff
2022-10-20
Jim Procter
JAL-2349 JAL-3855 - interactive point-wise row/column...
tree
|
commitdiff
2022-10-20
Jim Procter
JAL-3855 RGB colours from the alphafold paE scale.
tree
|
commitdiff
2022-10-19
Jim Procter
JAL-2349 JAL-4033 refactored contact matrix geom calc...
tree
|
commitdiff
2022-10-17
Jim Procter
JAL-2349 JAL-3855 column selection highlighting
tree
|
commitdiff
2022-10-17
Jim Procter
JAL-3855 bump AF version to 3 - keep contact renderer...
tree
|
commitdiff
2022-10-17
Jim Procter
JAL-1551 formatting
tree
|
commitdiff
2022-10-17
Jim Procter
JAL-3855 report download errors as errors!
tree
|
commitdiff
2022-10-17
Jim Procter
JAL-2349 JAL-3855 Integrate pAE retrieval in StructureF...
tree
|
commitdiff
2022-10-15
Jim Procter
JAL-2349 reusable contact map holder for SequenceI...
tree
|
commitdiff
2022-10-15
Jim Procter
JAL-3855 2349 TODO
tree
|
commitdiff
2022-10-15
Jim Procter
JAL-3855 import pAE when StructureSelectionManager...
tree
|
commitdiff
2022-10-15
Jim Procter
JAL-3855 pAE v2 import
tree
|
commitdiff
2022-10-14
Jim Procter
JAL-3855 refactor the pAE retrieval code so it can...
tree
|
commitdiff
2022-10-14
Jim Procter
Merge branch 'features/JAL-3895_alphafoldcolours' into...
tree
|
commitdiff
2022-10-14
Jim Procter
Merge branch 'develop' into features/JAL-3895_alphafold...
features/JAL-3895_alphafoldcolours
tree
|
commitdiff
2022-10-11
Jim Procter
JAL-4073 fix PEBCAK failure
tree
|
commitdiff
2022-10-07
Jim Procter
Fix for JAL-4075 - don’t write a label in secondary...
tree
|
commitdiff
2022-10-06
Jim Procter
stable url for PFAM retrieval via interpro api :) JAL...
tree
|
commitdiff
2022-10-06
Jim Procter
JAL-1551 formatting
tree
|
commitdiff
2022-10-06
Jim Procter
JAL-3895 alphafold colours via pluggable annotation...
tree
|
commitdiff
2022-10-06
Jim Procter
JAL-1551 formatting
tree
|
commitdiff
2022-10-06
Jim Procter
JAL-4073 Pfam retrieval now works via a template includ...
tree
|
commitdiff
2022-10-06
Jim Procter
Patch for JAL-4074 - any content ending in ‘gzip’ recog...
tree
|
commitdiff
2022-09-29
Ben Soares
Merge branch 'develop' into bug/JAL-1988_JAL-3772_impro...
tree
|
commitdiff
2022-09-26
Ben Soares
JAL-1988 JAL-3772 linked undostack to saved changes...
tree
|
commitdiff
2022-09-23
Ben Soares
JAL-1988 JAL-3772 Quit confirmation dialog boxes with...
tree
|
commitdiff
2022-09-23
Ben Soares
JAL-3676 extra information about jalview_properties...
tree
|
commitdiff
2022-09-23
Ben Soares
JAL-1988 property based fake delay whilst saving projec...
tree
|
commitdiff
next